mRNA_10033 (mRNA) Tribonema minus UTEX_B_3156
Overview
Homology
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA) HSP 1 Score: 451 bits (1161), Expect = 2.940e-160 Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1 Query: 1 MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN 699 MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN Sbjct: 1 MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN 233
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI) HSP 1 Score: 254 bits (649), Expect = 1.890e-82 Identity = 126/215 (58.60%), Postives = 163/215 (75.81%), Query Frame = 1 Query: 52 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM DI +RLS + EEV+KR LL G D KL+ + ++RK Y Q ADV V + P+D VD + + V+ + +FIDSNPPKWQ+WK+ A A+GI W Sbjct: 16 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQ------ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWA 224
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE) HSP 1 Score: 256 bits (654), Expect = 3.220e-82 Identity = 127/215 (59.07%), Postives = 164/215 (76.28%), Query Frame = 1 Query: 52 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM DI +RLS + EEV+KR LL G D KL+ + ++RK Y Q ADV V + P+D VD + + V+ + +FIDSNPPKWQ+WK+ A A+GI WV Sbjct: 86 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQ------ADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEWV 294
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A448ZQW6_9STRA (Shikimate kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQW6_9STRA) HSP 1 Score: 193 bits (490), Expect = 2.250e-57 Identity = 104/223 (46.64%), Postives = 148/223 (66.37%), Query Frame = 1 Query: 31 AGDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 +GDDE + A L G +L+G+N+Y VGMMG+GK+SV LA RMG Y F+DTD IIE+ + + ++FE +GEE FRD+E++VL+ +H+YV+ VV+TGGG+V + +NWGKLQTG+VVWLD+A + I+KR+ NE+ R LL+ D L+ + +ER Y Q AD+RV ++ D DAV V +L FID NPP W+ K A+ G++WV Sbjct: 87 SGDDENAKTIDPARLLGPRLQGSNLYLVGMMGSGKSSVGDKLARRMGSYKFLDTDEIIEKATKLTINEIFESEGEEGFRDVESQVLDTVHAYVRCVVSTGGGLVCKPKNWGKLQTGIVVWLDVAPEVILKRVEGNED----RPLLKTKDPLQTLKDLLEERTPKYNQ------ADLRVEITEDMDEDAVASRIVLDLHNFIDDNPPAWKLAKQKAQEEGLDWV 299
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A1Z5KE71_FISSO (Shikimate kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE71_FISSO) HSP 1 Score: 188 bits (478), Expect = 7.020e-56 Identity = 103/232 (44.40%), Postives = 146/232 (62.93%), Query Frame = 1 Query: 4 NTDALGVAPAGDDEAYIRLQTAELGS-QLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 NTD + G +++ A L S +L G N+YF+GMMG+GKTSV +A RMG YTF+DTDAIIE+ + + ++FE +GEE FR +EA++L+ +H YV+ V++TGGGIV NW KLQTGLV+WLD+ + I+KR+ + R LLQ D KL+A+ +ERK Y+ AD+RV V+ + AV + +L FID NPP W+ K A+A G++WV Sbjct: 59 NTDLMTSTDGG-----LKIDPARLLSPRLNGANLYFIGMMGSGKTSVGEAVARRMGSYTFLDTDAIIEKATKMTIPEIFEAEGEEGFRQVEAQILDSVHPYVRCVISTGGGIVTRMENWSKLQTGLVIWLDVEPEVIIKRIQGTD-----RPLLQTEDPLKKLKALLEERKPKYKN------ADIRVKVTEEMDTAAVADQVIYDLHHFIDDNPPAWKLAKAKAQAEGLDWV 274
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA) HSP 1 Score: 187 bits (475), Expect = 1.010e-55 Identity = 96/204 (47.06%), Postives = 137/204 (67.16%), Query Frame = 1 Query: 40 DEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKW 651 +E + + L S+L GT++YFVGMMGTGK++ R LA ++ Y+F+DTD +IE + +FE++GEE FR+IE+ V+++ +Y +L +ATGGG V +NWGK+QTG+VVWL M ++I +R S N+EEV KR LLQGGD KL+ I D+RK YE ADV V +SP DSV+ VV ++ +F+D NPPK+ Sbjct: 45 EEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEV------ADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV) HSP 1 Score: 187 bits (474), Expect = 1.020e-54 Identity = 104/232 (44.83%), Postives = 149/232 (64.22%), Query Frame = 1 Query: 4 NTDALGVAPAGDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 N D L V DD +++ A L G +L+G+N+YF+GMMG+GK++V +A RMG Y F+DTD+IIE+ + ++FE +GEE FR +E ++L+ +H+YV+ VV+TGGGIV +NW KLQTGLVVWLD+ + I+KR+ +E R LLQ D KL+ + ER+ Y Q AD+R+ V+ D DAV + EL FID NPP W++ K A+A G++WV Sbjct: 103 NPDILKV----DDGEGMKIDPARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGDEN----RPLLQTDDPLKKLKDLLGEREERYAQ------ADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDWV 320
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA) HSP 1 Score: 183 bits (464), Expect = 1.580e-53 Identity = 98/222 (44.14%), Postives = 145/222 (65.32%), Query Frame = 1 Query: 34 GDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 G D +++ A L G +L+G+N+YFVGMMG+GK++V +A RMG Y F+DTD IIE+ + ++F+ +GEE FR+ EA+VL+ +H+YV+ V++TGGG+V NW KLQTG+V+WLD+ + I+KR+ + + R LLQ D KL+ + +ER+ Y Q ADVR+ V+ D +AV V EL FID NPP W++ K A+A G++WV Sbjct: 84 GTDGEGMKIDPARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQ------ADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDWV 295
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA) HSP 1 Score: 179 bits (454), Expect = 4.880e-52 Identity = 95/223 (42.60%), Postives = 145/223 (65.02%), Query Frame = 1 Query: 34 GDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDD-SVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696 G+D + + A L G +L+G+N+YFVGMMG+GK++V +A RMG Y F+DTD IIE + A + ++F ++GE+ FRDIE++VL+ +H++V+ VV+TGGGIVK+ NW KLQ+G+V+W+D+ I R+ ++ R LLQ + L+ + +ERK Y Q ADVR+ V+ + S++ V V +L FID NPP W+ K A+A G++WV Sbjct: 82 GEDGEGMTIDPARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRIKDKDD----RPLLQNDNPLETLEKLLEERKPRYSQ------ADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDWV 294
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7S2SDW0_9STRA (Shikimate kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDW0_9STRA) HSP 1 Score: 178 bits (452), Expect = 5.560e-52 Identity = 86/209 (41.15%), Postives = 140/209 (66.99%), Query Frame = 1 Query: 73 LGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLL---QGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGIN 690 LG +L+G +++ VGMMG+GKT+ A +G Y+F+D+D IIE+L Q VA++FEE GE FR++E++VL+EL +YV++VV+TGGG V NWG LQ+G+VV+LD+ + R++ +EE++S R LL GGD + K+ I ++R++ YEQ AD+ V + + +D + ++ ++ +NPPKW+QW++ A+ G+N Sbjct: 71 LGEKLKGVSIFLVGMMGSGKTTAGEIFARSLGSYSFLDSDGIIEKLQQRTVAQIFEEDGEGVFRELESKVLSELKAYVRVVVSTGGGAVISDANWGHLQSGIVVFLDVPAQALADRVAQSEEQLSSRPLLAGEDGGDPSEKISTILEQRRSKYEQ------ADITVTLDGSEPLDDCATRIIDAIENYLSTNPPKWKQWQERARGEGLN 273 The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
spliced messenger RNA >mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon. ATGAACACTGATGCTCTGGGTGTGGCACCAGCTGGAGATGACGAGGCATAback to top protein sequence of jgi.p|Trimin1|173163 >Trimin1|173163|e_gw1.100.109.1 ID=Trimin1|173163|e_gw1.100.109.1|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNback to top mRNA from alignment at Contig_100:258384..260755+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2372bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )back to top Coding sequence (CDS) from alignment at Contig_100:258384..260755+ >mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )back to top |