mRNA_10033 (mRNA) Tribonema minus UTEX_B_3156

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
Namejgi.p|Trimin1|173163
Unique NamemRNA_10033
TypemRNA
OrganismTribonema minus UTEX_B_3156 (Tribonema minus UTEX_B_3156 )
Homology
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A835ZK89_9STRA (Shikimate kinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835ZK89_9STRA)

HSP 1 Score: 451 bits (1161), Expect = 2.940e-160
Identity = 233/233 (100.00%), Postives = 233/233 (100.00%), Query Frame = 1
Query:    1 MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN 699
            MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN
Sbjct:    1 MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWVN 233          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: D8LTH1_ECTSI (Shikimate Kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LTH1_ECTSI)

HSP 1 Score: 254 bits (649), Expect = 1.890e-82
Identity = 126/215 (58.60%), Postives = 163/215 (75.81%), Query Frame = 1
Query:   52 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM   DI +RLS + EEV+KR LL G D   KL+ + ++RK  Y Q      ADV V + P+D VD +  + V+ + +FIDSNPPKWQ+WK+ A A+GI W 
Sbjct:   16 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEGFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMEPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQ------ADVTVQLKPEDGVDDITYNVVNTILEFIDSNPPKWQKWKEKANAAGIEWA 224          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A6H5JIK7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JIK7_9PHAE)

HSP 1 Score: 256 bits (654), Expect = 3.220e-82
Identity = 127/215 (59.07%), Postives = 164/215 (76.28%), Query Frame = 1
Query:   52 IRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            +RLQ AELGS+LRGTNV+FVGMMGTGK++VAR LAD MGRY F+DTD IIE+L+ A V +VF + GEE FR +E++VL+++HSYVK+ VATGGGIV E +NWGK+QTG+VVWLDM   DI +RLS + EEV+KR LL G D   KL+ + ++RK  Y Q      ADV V + P+D VD +  + V+ + +FIDSNPPKWQ+WK+ A A+GI WV
Sbjct:   86 LRLQAAELGSRLRGTNVFFVGMMGTGKSTVARALADVMGRYIFLDTDTIIEELLGASVGEVFAKDGEEAFRSVESQVLDQVHSYVKMCVATGGGIVSENKNWGKMQTGMVVWLDMKPKDIFERLSKDPEEVAKRPLLAGDDPQGKLEELLEKRKPQYAQ------ADVTVQLKPEDGVDDITYNVVNAILEFIDSNPPKWQKWKEKANAAGIEWV 294          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A448ZQW6_9STRA (Shikimate kinase n=1 Tax=Pseudo-nitzschia multistriata TaxID=183589 RepID=A0A448ZQW6_9STRA)

HSP 1 Score: 193 bits (490), Expect = 2.250e-57
Identity = 104/223 (46.64%), Postives = 148/223 (66.37%), Query Frame = 1
Query:   31 AGDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            +GDDE    +  A L G +L+G+N+Y VGMMG+GK+SV   LA RMG Y F+DTD IIE+  +  + ++FE +GEE FRD+E++VL+ +H+YV+ VV+TGGG+V + +NWGKLQTG+VVWLD+A + I+KR+  NE+    R LL+  D    L+ + +ER   Y Q      AD+RV ++ D   DAV    V +L  FID NPP W+  K  A+  G++WV
Sbjct:   87 SGDDENAKTIDPARLLGPRLQGSNLYLVGMMGSGKSSVGDKLARRMGSYKFLDTDEIIEKATKLTINEIFESEGEEGFRDVESQVLDTVHAYVRCVVSTGGGLVCKPKNWGKLQTGIVVWLDVAPEVILKRVEGNED----RPLLKTKDPLQTLKDLLEERTPKYNQ------ADLRVEITEDMDEDAVASRIVLDLHNFIDDNPPAWKLAKQKAQEEGLDWV 299          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A1Z5KE71_FISSO (Shikimate kinase n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KE71_FISSO)

HSP 1 Score: 188 bits (478), Expect = 7.020e-56
Identity = 103/232 (44.40%), Postives = 146/232 (62.93%), Query Frame = 1
Query:    4 NTDALGVAPAGDDEAYIRLQTAELGS-QLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            NTD +     G     +++  A L S +L G N+YF+GMMG+GKTSV   +A RMG YTF+DTDAIIE+  +  + ++FE +GEE FR +EA++L+ +H YV+ V++TGGGIV    NW KLQTGLV+WLD+  + I+KR+   +     R LLQ  D   KL+A+ +ERK  Y+       AD+RV V+ +    AV    + +L  FID NPP W+  K  A+A G++WV
Sbjct:   59 NTDLMTSTDGG-----LKIDPARLLSPRLNGANLYFIGMMGSGKTSVGEAVARRMGSYTFLDTDAIIEKATKMTIPEIFEAEGEEGFRQVEAQILDSVHPYVRCVISTGGGIVTRMENWSKLQTGLVIWLDVEPEVIIKRIQGTD-----RPLLQTEDPLKKLKALLEERKPKYKN------ADIRVKVTEEMDTAAVADQVIYDLHHFIDDNPPAWKLAKAKAQAEGLDWV 274          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7R9UH62_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UH62_9STRA)

HSP 1 Score: 187 bits (475), Expect = 1.010e-55
Identity = 96/204 (47.06%), Postives = 137/204 (67.16%), Query Frame = 1
Query:   40 DEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKW 651
            +E  +  +   L S+L GT++YFVGMMGTGK++  R LA ++  Y+F+DTD +IE       + +FE++GEE FR+IE+ V+++  +Y +L +ATGGG V   +NWGK+QTG+VVWL M  ++I +R S N+EEV KR LLQGGD   KL+ I D+RK  YE       ADV V +SP DSV+ VV     ++ +F+D NPPK+
Sbjct:   45 EEKAVEDEFTRLASRLYGTSIYFVGMMGTGKSTTGRELAKKLPGYSFLDTDTVIEAYAGQDCSAIFEKEGEEGFRNIESMVMDQACAYRRLCIATGGGAVLRNQNWGKMQTGIVVWLQMEPEEIAERFSGNDEEVEKRPLLQGGDAVDKLREILDKRKEKYEV------ADVHVQLSPGDSVEEVVERVCGKIHRFMDENPPKF 242          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7S1Z366_TRICV (Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1Z366_TRICV)

HSP 1 Score: 187 bits (474), Expect = 1.020e-54
Identity = 104/232 (44.83%), Postives = 149/232 (64.22%), Query Frame = 1
Query:    4 NTDALGVAPAGDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            N D L V    DD   +++  A L G +L+G+N+YF+GMMG+GK++V   +A RMG Y F+DTD+IIE+     + ++FE +GEE FR +E ++L+ +H+YV+ VV+TGGGIV   +NW KLQTGLVVWLD+  + I+KR+  +E     R LLQ  D   KL+ +  ER+  Y Q      AD+R+ V+ D   DAV    + EL  FID NPP W++ K  A+A G++WV
Sbjct:  103 NPDILKV----DDGEGMKIDPARLLGPRLQGSNLYFIGMMGSGKSAVGDIVARRMGTYNFLDTDSIIEKATGMTIPEIFEAEGEEGFRQVEGQILDSVHAYVRCVVSTGGGIVCRLQNWAKLQTGLVVWLDVDPEVIIKRIEGDEN----RPLLQTDDPLKKLKDLLGEREERYAQ------ADLRIEVTEDMDEDAVANMVIKELHYFIDENPPAWKKAKAKAQADGLDWV 320          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7R9ZGS2_9STRA (Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9ZGS2_9STRA)

HSP 1 Score: 183 bits (464), Expect = 1.580e-53
Identity = 98/222 (44.14%), Postives = 145/222 (65.32%), Query Frame = 1
Query:   34 GDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            G D   +++  A L G +L+G+N+YFVGMMG+GK++V   +A RMG Y F+DTD IIE+     + ++F+ +GEE FR+ EA+VL+ +H+YV+ V++TGGG+V    NW KLQTG+V+WLD+  + I+KR+  +    + R LLQ  D   KL+ + +ER+  Y Q      ADVR+ V+ D   +AV    V EL  FID NPP W++ K  A+A G++WV
Sbjct:   84 GTDGEGMKIDPARLLGPRLQGSNLYFVGMMGSGKSAVGDVVARRMGTYNFLDTDEIIEKATAMSIPEIFDAEGEEGFREAEAQVLDSVHAYVRCVISTGGGLVCRMGNWSKLQTGVVIWLDVDPELIIKRIEGD----TNRPLLQADDPLQKLKDLLEERREKYSQ------ADVRIEVTEDMDENAVADLVVKELHNFIDENPPAWKKAKAKAQAEGLDWV 295          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A6U3Q8M5_9STRA (Shikimate kinase n=1 Tax=Ditylum brightwellii TaxID=49249 RepID=A0A6U3Q8M5_9STRA)

HSP 1 Score: 179 bits (454), Expect = 4.880e-52
Identity = 95/223 (42.60%), Postives = 145/223 (65.02%), Query Frame = 1
Query:   34 GDDEAYIRLQTAEL-GSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDD-SVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGINWV 696
            G+D   + +  A L G +L+G+N+YFVGMMG+GK++V   +A RMG Y F+DTD IIE +  A + ++F ++GE+ FRDIE++VL+ +H++V+ VV+TGGGIVK+  NW KLQ+G+V+W+D+    I  R+   ++    R LLQ  +    L+ + +ERK  Y Q      ADVR+ V+ +  S++ V    V +L  FID NPP W+  K  A+A G++WV
Sbjct:   82 GEDGEGMTIDPARLLGPRLQGSNLYFVGMMGSGKSAVGDAVARRMGSYNFLDTDTIIESVTNATITEIFAQEGEDTFRDIESQVLDSVHAHVRCVVSTGGGIVKKLSNWAKLQSGVVIWIDVPPSVIYNRIKDKDD----RPLLQNDNPLETLEKLLEERKPRYSQ------ADVRIEVNDESMSIEDVASKVVQDLHNFIDENPPAWKIAKAKAQAEGLDWV 294          
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Match: A0A7S2SDW0_9STRA (Shikimate kinase n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SDW0_9STRA)

HSP 1 Score: 178 bits (452), Expect = 5.560e-52
Identity = 86/209 (41.15%), Postives = 140/209 (66.99%), Query Frame = 1
Query:   73 LGSQLRGTNVYFVGMMGTGKTSVARNLADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHSYVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSKRSLL---QGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVLSSVSELQKFIDSNPPKWQQWKDSAKASGIN 690
            LG +L+G +++ VGMMG+GKT+     A  +G Y+F+D+D IIE+L Q  VA++FEE GE  FR++E++VL+EL +YV++VV+TGGG V    NWG LQ+G+VV+LD+    +  R++ +EE++S R LL    GGD + K+  I ++R++ YEQ      AD+ V +   + +D      +  ++ ++ +NPPKW+QW++ A+  G+N
Sbjct:   71 LGEKLKGVSIFLVGMMGSGKTTAGEIFARSLGSYSFLDSDGIIEKLQQRTVAQIFEEDGEGVFRELESKVLSELKAYVRVVVSTGGGAVISDANWGHLQSGIVVFLDVPAQALADRVAQSEEQLSSRPLLAGEDGGDPSEKISTILEQRRSKYEQ------ADITVTLDGSEPLDDCATRIIDAIENYLSTNPPKWKQWQERARGEGLN 273          
The following BLAST results are available for this feature:
BLAST of jgi.p|Trimin1|173163 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A835ZK89_9STRA2.940e-160100.00Shikimate kinase n=1 Tax=Tribonema minus TaxID=303... [more]
D8LTH1_ECTSI1.890e-8258.60Shikimate Kinase n=1 Tax=Ectocarpus siliculosus Ta... [more]
A0A6H5JIK7_9PHAE3.220e-8259.07Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A448ZQW6_9STRA2.250e-5746.64Shikimate kinase n=1 Tax=Pseudo-nitzschia multistr... [more]
A0A1Z5KE71_FISSO7.020e-5644.40Shikimate kinase n=2 Tax=Fistulifera solaris TaxID... [more]
A0A7R9UH62_9STRA1.010e-5547.06Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A7S1Z366_TRICV1.020e-5444.83Shikimate kinase n=2 Tax=Trieres chinensis TaxID=1... [more]
A0A7R9ZGS2_9STRA1.580e-5344.14Shikimate kinase n=1 Tax=Pseudictyota dubia TaxID=... [more]
A0A6U3Q8M5_9STRA4.880e-5242.60Shikimate kinase n=1 Tax=Ditylum brightwellii TaxI... [more]
A0A7S2SDW0_9STRA5.560e-5241.15Shikimate kinase n=1 Tax=Rhizochromulina marina Ta... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
Contig_100contigContig_100:258384..260755 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Tribonema minus UTEX_B_31562021-06-17
Properties
Property NameValue
ProteomeIdTrimin1|173163|e_gw1.100.109.1
BRITEko00000,ko00001,ko00002,ko01000
KEGG rclassRC00002,RC00078
KEGG ReactionR02412
KEGG ModuleM00022
KEGG Pathwayko00400,ko01100,ko01110,ko01130,ko01230,map00400,map01100,map01110,map01130,map01230
KEGG koko:K00891
EC2.7.1.71
GOsGO:0000287,GO:0003674,GO:0003824,GO:0004765,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006082,GO:0006520,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0008150,GO:0008152,GO:0008652,GO:0009058,GO:0009072,GO:0009073,GO:0009507,GO:0009536,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0019438,GO:0019632,GO:0019752,GO:0032787,GO:0043167,GO:0043169,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046394,GO:0046872,GO:0071704,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1901615
Preferred nameSK
Descriptionshikimate metabolic process
COG categoryE
Max annot lvl2759|Eukaryota
EggNOG OGsCOG0703@1|root,2QTKR@2759|Eukaryota
Evalue3.09e-83
Seed ortholog2880.D8LTH1
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionShikimate Kinase
Ec32 orthologEc-02_005600.1
TranscriptId173485
TrackFilteredModels1
ProteinId173163
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173163gene_10033Tribonema minus UTEX_B_3156 geneContig_100 258384..260755 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
jgi.p|Trimin1|173163Trimin1|173163|e_gw1.100.109.1Tribonema minus UTEX_B_3156 polypeptideContig_100 258384..260755 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
exon_10033_1exon_10033_1Tribonema minus UTEX_B_3156 exonContig_100 258384..258473 +
exon_10033_2exon_10033_2Tribonema minus UTEX_B_3156 exonContig_100 258735..258851 +
exon_10033_3exon_10033_3Tribonema minus UTEX_B_3156 exonContig_100 259234..259377 +
exon_10033_4exon_10033_4Tribonema minus UTEX_B_3156 exonContig_100 259829..260023 +
exon_10033_5exon_10033_5Tribonema minus UTEX_B_3156 exonContig_100 260600..260755 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
CDS_10033CDS_10033Tribonema minus UTEX_B_3156 CDSContig_100 258384..258473 +


Sequences
The following sequences are available for this feature:

spliced messenger RNA

>mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=702bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )|Notes=Excludes all bases but those of type(s): exon.  
ATGAACACTGATGCTCTGGGTGTGGCACCAGCTGGAGATGACGAGGCATA
TATTCGGCTGCAGACGGCGGAGCTTGGATCCCAATTGCGGGGGACCAATG
TGTACTTTGTGGGGATGATGGGCACAGGGAAGACATCAGTGGCAAGGAAT
CTGGCAGATCGCATGGGGCGGTACACGTTCATGGATACTGATGCCATCAT
CGAGCAGCTCATGCAGGCACCTGTGGCAAAGGTCTTTGAGGAGCAAGGGG
AGGAGGAGTTCAGGGACATAGAGGCACGGGTTCTGAATGAGCTGCACTCC
TATGTTAAGCTGGTGGTAGCCACGGGGGGCGGCATCGTCAAGGAGAAGCG
AAATTGGGGCAAGCTCCAGACAGGCCTGGTGGTGTGGCTGGATATGGCGA
TTGACGACATAGTCAAGCGGCTATCTAGCAATGAGGAGGAGGTGTCTAAG
CGGTCGCTGTTGCAGGGGGGGGATGTGGCTGCCAAGCTGCAGGCCATATA
CGACGAACGAAAGGCTATGTACGAGCAGGCAAGTACAAGTTCAAGTGCTG
ATGTACGGGTCTACGTGTCTCCAGATGACTCGGTAGATGCGGTGGTGCTG
TCGTCTGTGTCAGAGCTCCAGAAGTTCATCGACAGCAACCCACCCAAGTG
GCAACAATGGAAAGACTCCGCAAAAGCCAGTGGCATCAACTGGGTCAACT
AA
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protein sequence of jgi.p|Trimin1|173163

>Trimin1|173163|e_gw1.100.109.1 ID=Trimin1|173163|e_gw1.100.109.1|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=polypeptide|length=234bp
MNTDALGVAPAGDDEAYIRLQTAELGSQLRGTNVYFVGMMGTGKTSVARN
LADRMGRYTFMDTDAIIEQLMQAPVAKVFEEQGEEEFRDIEARVLNELHS
YVKLVVATGGGIVKEKRNWGKLQTGLVVWLDMAIDDIVKRLSSNEEEVSK
RSLLQGGDVAAKLQAIYDERKAMYEQASTSSSADVRVYVSPDDSVDAVVL
SSVSELQKFIDSNPPKWQQWKDSAKASGINWVN*
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mRNA from alignment at Contig_100:258384..260755+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=mRNA|length=2372bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )
ATGAACACTGATGCTCTGGGTGTGGCACCAGCTGGAGATGACGAGGCATA TATTCGGCTGCAGACGGCGGAGCTTGGATCCCAATTGCGGGTGCGTGGTA CATGATGTAATATGCTGGGTGCCGCCAGAAGACGATTCGTGAGCACGGAT CATGATTGCGGATGCGAGGCTGCTTTGCGATACTACAGAATGGCTGAGCC AGCAACCAACTGCTTCAGTTGATACGTCGTTTTCAGCGACTGCACCTCTT CTTGTCAGCATTATGGCAACAACGCCTCCTCCTTTGTGTGTGCTTGAACT GCACGAACACCGCCTCTGCCTCCAACGCACACAATATCCTGTGTGTTGCA GGGGACCAATGTGTACTTTGTGGGGATGATGGGCACAGGGAAGACATCAG TGGCAAGGAATCTGGCAGATCGCATGGGGCGGTACACGTTCATGGATACT GATGCCATCATCGAGCAGGTAGGCCCAGCAACTCCCATCCTGCACATCAA AATGTTGCATGTTCATTACTGTCAGTGTGTGCTCCAACTCTCACGTTCGC ATTCAGATCTCACATGTGACCTTTACTCTGCGCACTGACTTGACACACAC ACATGCACTTTCTAAAACGAATGTGCACTTGAAGTGTCGCTCGGACACTG TCTGCACGATCGGCTATCAATGCGCAGCCAGCGCAAAGTGCTTTCACACT GATGCATGCCCTTGTTGACGTCTGCAGCCGCATTTCTTAACACTTGCAGT TTCTTGACATTTGCAGCCACATTTCGTTTCAATGGCGCCACATCCGACTT GCTTGGTGTCGCTGTTTGTGCCCTGCTTTGCCATACTGTACCTCTCACAG CTCATGCAGGCACCTGTGGCAAAGGTCTTTGAGGAGCAAGGGGAGGAGGA GTTCAGGGACATAGAGGCACGGGTTCTGAATGAGCTGCACTCCTATGTTA AGCTGGTGGTAGCCACGGGGGGCGGCATCGTCAAGGAGAAGCGAGTGAGT CATTTATACAAGTATGTTAATAAGTGTAAGTGTGCTTGTGAATGAGCCTA AAGAGGGGCCACCGGATGCATTGATCATTGTAATCCGTGCGCTGGCCGTA TGCCGCCATCAGATGCCACATGTGACATGTCATGTCGCTGGACATGCCAC ATGTCATGTCGCTGGACAGCTGCATGTTGCAAAGGACGCTGGAAAGGGGC TTCACTGCGCCGTTGAAGAAAGGTCGCTGCGCATGTGTGCTCAACCGTTT TGTAGCCTGCATGCTTCACTCTCCAAGTTCACTCCAAGCTGGTCACTCTT TGGACAGCACGGTACAGTGGCCATCAGATCAAGGCTGGCACGCATATATG TTCACATGTACTCCAGGGTCATCATGCTGGACCTGAGCATGAGCACTGAC ATATTCATGTCGCTGCCCTTCAATACATGCCATCTGCCCCCTCAGAATTG GGGCAAGCTCCAGACAGGCCTGGTGGTGTGGCTGGATATGGCGATTGACG ACATAGTCAAGCGGCTATCTAGCAATGAGGAGGAGGTGTCTAAGCGGTCG CTGTTGCAGGGGGGGGATGTGGCTGCCAAGCTGCAGGCCATATACGACGA ACGAAAGGCTATGTACGAGCAGGCAAGTACAAGTTCAAGTGTGAGGTGTG CTACTTCAAGGCCATCTTCATTTGCAGTACAGATATTATTTACTGTTGTA TGGACATCCTGGGGGTGTTGGTAGTGAAGTTCACAGCGCTAGGTAGCGTC CCAACAGCGTTGCGTGCTTGTCAAGGCGGAACAAGCTCACAGGGTGGGGC TTTGTTGAGCGGTGCGCTTCTGGCCATTTGCTAGAGATGTTGATACGTGG CCTGAGGCTTGTACATGCTGTGACTTACATGTGCAAAATGCAAGTTATTT GCTGCATCTGTGCCCTCACAATGTGAATGTACATCCCATGCCACATTCGG CGCAGATGTGCATGTATGCGCACATATGTATGTATACACCCGCATGTATG ATGGTATGTGAAGACGTAGCTGTATGTAGCTATGTGAACGCAGCGGGGTA GGTAGGAGTGCTTTCATGCTACCTGGCTGCCCACTTTGCTGGCACATCAG TAACAGGGCCTCAAAATCGGTCCACCCAAGGACCGCGCTATCTTACCATT GTGCTCTCATTATGGCATCCATCGCTGTCATCTCATATCGGTTTGTCGTC TGTATCTGCCCTGCAGGCTGATGTACGGGTCTACGTGTCTCCAGATGACT CGGTAGATGCGGTGGTGCTGTCGTCTGTGTCAGAGCTCCAGAAGTTCATC GACAGCAACCCACCCAAGTGGCAACAATGGAAAGACTCCGCAAAAGCCAG TGGCATCAACTGGGTCAACTAA
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Coding sequence (CDS) from alignment at Contig_100:258384..260755+

>mRNA_10033 ID=mRNA_10033|Name=jgi.p|Trimin1|173163|organism=Tribonema minus UTEX_B_3156 |type=CDS|length=702bp|location=Sequence derived from alignment at Contig_100:258384..260755+ (Tribonema minus UTEX_B_3156 )
ATGAACACTGATGCTCTGGGTGTGGCACCAGCTGGAGATGACGAGGCATA
TATTCGGCTGCAGACGGCGGAGCTTGGATCCCAATTGCGGGGGACCAATG
TGTACTTTGTGGGGATGATGGGCACAGGGAAGACATCAGTGGCAAGGAAT
CTGGCAGATCGCATGGGGCGGTACACGTTCATGGATACTGATGCCATCAT
CGAGCAGCTCATGCAGGCACCTGTGGCAAAGGTCTTTGAGGAGCAAGGGG
AGGAGGAGTTCAGGGACATAGAGGCACGGGTTCTGAATGAGCTGCACTCC
TATGTTAAGCTGGTGGTAGCCACGGGGGGCGGCATCGTCAAGGAGAAGCG
AAATTGGGGCAAGCTCCAGACAGGCCTGGTGGTGTGGCTGGATATGGCGA
TTGACGACATAGTCAAGCGGCTATCTAGCAATGAGGAGGAGGTGTCTAAG
CGGTCGCTGTTGCAGGGGGGGGATGTGGCTGCCAAGCTGCAGGCCATATA
CGACGAACGAAAGGCTATGTACGAGCAGGCAAGTACAAGTTCAAGTGCTG
ATGTACGGGTCTACGTGTCTCCAGATGACTCGGTAGATGCGGTGGTGCTG
TCGTCTGTGTCAGAGCTCCAGAAGTTCATCGACAGCAACCCACCCAAGTG
GCAACAATGGAAAGACTCCGCAAAAGCCAGTGGCATCAACTGGGTCAACT
AA
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