mRNA_S-firma_F_contig10347.494.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10347.494.1
Unique NamemRNA_S-firma_F_contig10347.494.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: D8LNE1_ECTSI (Galactokinase (Galactose kinase) n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LNE1_ECTSI)

HSP 1 Score: 277 bits (709), Expect = 1.080e-85
Identity = 156/234 (66.67%), Postives = 171/234 (73.08%), Query Frame = 1 
Query:   85 AGFPREKGEEEADGG-----SRPVGEQRRGEGEEERVPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGILSSAGISPPSSKVK 771
            AG P +K E   DGG      R V     G G EERVPTAGELLV ARDLY+D FG P D   VSAGYAPGRVNLIGEHTDY GGFV+PLALERGTVVYGVGRL D DE       RG CRV+S+TMQQ              A     DV FRADESL PGEPEWANYVKGVVKE+M K+PEGKRLEF+A VVG+VP+GGGVSSSASLSVAMATFLQG+L+SAG++PP+ K K
Sbjct:  172 AGVPHDKTEGAGDGGPKHGDGRSVSVVEEG-GIEERVPTAGELLVMARDLYDDTFGPPEDVRHVSAGYAPGRVNLIGEHTDYQGGFVLPLALERGTVVYGVGRLVDSDEATAEGSDRGLCRVVSQTMQQQQSEDEAGGE----AGELGGDVSFRADESLAPGEPEWANYVKGVVKEYMPKVPEGKRLEFTATVVGSVPIGGGVSSSASLSVAMATFLQGVLTSAGVTPPTPKEK 400
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A836CBL4_9STRA (Galactokinase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CBL4_9STRA)

HSP 1 Score: 141 bits (356), Expect = 1.230e-35
Identity = 82/195 (42.05%), Postives = 106/195 (54.36%), Query Frame = 1 
Query:  172 ERVPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGILSSAGISPP 756
            +R  T  ELL  ARD +   FG P D     A +APGRVNLIGEHTDY+GGFV+P ALERGTVV   GRL   D  +      G  RV S   +                  +         E LGPGE  W NYV+G + +++  +PEG+ L     +VG++PLGGG+SSSASL+ A+AT ++ +L   G   P
Sbjct:   48 DRTRTREELLQAARDGFRAAFGAPPDPQHEYAAWAPGRVNLIGEHTDYNGGFVLPCALERGTVVLAAGRLVRADAADA-----GRVRVASMDCR----------------GGDGMLTFAALPEELGPGEESWGNYVRGAIAQYLGDVPEGRALALDMFIVGSLPLGGGLSSSASLTTAVATLVEAVLEGEGWQAP 221
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: I2CP88_NANGC (Galactokinase n=1 Tax=Nannochloropsis gaditana (strain CCMP526) TaxID=1093141 RepID=I2CP88_NANGC)

HSP 1 Score: 137 bits (344), Expect = 5.140e-34
Identity = 90/187 (48.13%), Postives = 109/187 (58.29%), Query Frame = 1 
Query:  178 VPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRL--KDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGIL 732
            VP+    L  A DL+ + +G    D D++A YAPGRVNLIGEHTDY+ GFV PLAL+  T V G G L  K  + +   T S      ISE+ Q                      V F AD+ L PGEP+WANYVKGVV E++  +P GK L F A V  +VPLG G+SSSASL VAMATFL+ IL
Sbjct:    3 VPSEDITLQHAIDLFREAYG---SDPDIAA-YAPGRVNLIGEHTDYNDGFVFPLALDLRTFVVGRGSLLIKPPNPKAALTESS----AISESEQGI--------------------VSFVADKDLAPGEPKWANYVKGVVAEYVKDVPAGKYLVFEAAVASSVPLGSGLSSSASLEVAMATFLEQIL 161
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: D7FSK4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FSK4_ECTSI)

HSP 1 Score: 134 bits (338), Expect = 3.840e-33
Identity = 87/179 (48.60%), Postives = 105/179 (58.66%), Query Frame = 1 
Query:  193 ELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGI 729
            EL   A  L+   FG P D   V   +APGRVNLIGEHTDY+GGFVMPLAL + TVV G G +   ++     GS G CR+IS                   AA E   V F+AD+ L PG+ EWANY+KGVV  F   +PEG  L F A +   VPLGGG+SSSA+L V+MAT L+ I
Sbjct:    9 ELTNTATALFEASFG-PSDGCAVV--FAPGRVNLIGEHTDYNGGFVMPLALGKKTVVVGRGSMVPREK----AGSAG-CRIISS------------------AAPEV--VSFKADQDLQPGKVEWANYIKGVVAAFRKDVPEGYELSFDAAIASNVPLGGGLSSSAALEVSMATLLEEI 159
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A7S2E1C8_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2E1C8_9STRA)

HSP 1 Score: 126 bits (316), Expect = 4.680e-30
Identity = 80/183 (43.72%), Postives = 104/183 (56.83%), Query Frame = 1 
Query:  196 LLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADES-LGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGILSSA 741
            LL KA+  +   FG    +    A  APGRVNLIGEHTDY+GGFV+PLALE+ TVV G+G++    E++        C ++S  +                   E   V F AD + L PG+P WANYVKGVVK + A +P G +  FSA     VPLG G+SSSA+L V+ AT L+ IL +A
Sbjct:   41 LLGKAKSTFLAAFG----EEPTIAAQAPGRVNLIGEHTDYTGGFVLPLALEKRTVVVGIGKIVPASEDD------SLCSIVSTGLDD-----------------EINVVHFDADPAVLVPGDPFWANYVKGVVKMYSADLPVGMKFSFSAAFASDVPLGAGLSSSAALEVSTATLLETILGTA 196
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A6S9KLL0_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KLL0_HETAK)

HSP 1 Score: 121 bits (304), Expect = 7.380e-29
Identity = 75/179 (41.90%), Postives = 105/179 (58.66%), Query Frame = 1 
Query:  196 LLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGIL 732
            LL +AR L+   +G    +A+++A +APGRVNLIGEHTDY+ GFV P+ALE+ T+V G G +K      +    R   RV SE  +                      V F AD SL P +P+W+NYV+GVV E++  +P G  ++F   +V  VPLG G+SSSA+L VA AT+L+ +L
Sbjct:    5 LLNRARYLFYQAYG---KEANIAA-FAPGRVNLIGEHTDYNDGFVFPMALEKRTIVVGTGVVK----RVLKFRERPLSRVASEQFKGF--------------------VEFPADTSLHPRDPQWSNYVRGVVAEYVPDLPAGYAMQFDLFIVSDVPLGSGLSSSAALEVATATWLEELL 155
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: UPI001B85D087 (galactokinase n=3 Tax=Passeridae TaxID=9158 RepID=UPI001B85D087)

HSP 1 Score: 117 bits (293), Expect = 4.530e-27
Identity = 82/188 (43.62%), Postives = 100/188 (53.19%), Query Frame = 1 
Query:  169 EERVPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCF---RADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQ 723
            E + P +  LL  AR  Y + FGG    A V A +APGRVNLIGEHTDY+ GFV+P+AL+ GTV+  VG    +D   I T S                            A E   V F   R + SL PG P WANYVKGV++ +   +  G    FSA+V   +PLGGG+SSSASL VA  TFLQ
Sbjct:    3 EPQEPGSSSLLAAARRAYEEAFGG----AAVVAAWAPGRVNLIGEHTDYNDGFVLPMALQLGTVL--VGCPTQDDTISIVTTSA--------------------------EADEPHKVQFPAPRPNSSLSPGMPRWANYVKGVIQHYRGGLVSG----FSAVVASNIPLGGGLSSSASLEVATYTFLQ 154
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A7S2G625_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2G625_9STRA)

HSP 1 Score: 117 bits (292), Expect = 5.780e-27
Identity = 74/172 (43.02%), Postives = 98/172 (56.98%), Query Frame = 1 
Query:  265 AGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCFRADESL---GPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGILSSAGISPPSSKVK 771
            A +APGRVNLIGEHTDY+GGFV+PLALE+ TVV   G++ D ++E +       C V S  M+                +     V F A+  L   G  +P W NYVKGVVK++   +P GK+  F A+    VPLG G+SSSA+L VA AT L+ I   +G+ PP+   K
Sbjct:    4 AAHAPGRVNLIGEHTDYTGGFVLPLALEKRTVVVATGKVVDVEDEAM-------CSVGSIGMEDE--------------SGNLEIVSFDANPDLLVPGMPQPFWTNYVKGVVKQYAGDLPAGKKFVFQAVFASDVPLGAGLSSSAALEVATATLLEMI---SGVVPPNPATK 151
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BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A6J2VFX2_CHACN (galactokinase n=1 Tax=Chanos chanos TaxID=29144 RepID=A0A6J2VFX2_CHACN)

HSP 1 Score: 116 bits (291), Expect = 8.990e-27
Identity = 81/185 (43.78%), Postives = 100/185 (54.05%), Query Frame = 1 
Query:  178 VPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCF---RADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQ 723
            VP+  EL+ +AR +Y + FGG   D  V A   PGRVNLIGEHTDY+GGFV+P+AL   TVV G            +TG    C +++ T                  A E   V F    AD  L  G+P WANYVKGVV  + A+   G    F A++  +VPLGGG+SSSASL VA  TFLQ
Sbjct:    7 VPSVAELVAEARRVYQENFGGDGPDIAVCA---PGRVNLIGEHTDYNGGFVLPMALPMVTVVVGS----------RSTGRS--CSIVTVTE----------------GAGELRKVDFDLPTADAPLTRGQPSWANYVKGVVHHYRAQPLPG----FRAVIASSVPLGGGLSSSASLEVATYTFLQ 156
[Close]
BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Match: A0A8C4CI56_9TELE (Galactokinase 1 n=3 Tax=Denticeps clupeoides TaxID=299321 RepID=A0A8C4CI56_9TELE)

HSP 1 Score: 114 bits (286), Expect = 4.750e-26
Identity = 80/184 (43.48%), Postives = 99/184 (53.80%), Query Frame = 1 
Query:  181 PTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIGEHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETMQQXXXXXXXXXXXXXXAAAEAADVCF---RADESLGPGEPEWANYVKGVVKEFMAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQ 723
            PT  +LLV+AR++Y   FGG   D  V A   PGRVNLIGEHTDY+ GFV+P+AL   TV+ G  R   +D   + TGS                           A  E   V F     D  L PG P WANYVKGV++ + A+   G    F A++V +VPLG G+SSSASL VA+ TFLQ
Sbjct:    6 PTVDDLLVRAREVYLQTFGGQGPDVAVCA---PGRVNLIGEHTDYNQGFVLPMALPLVTVMVGT-RTPGQDVSVV-TGSE--------------------------AVEEPKRVDFLLPTPDAPLAPGTPSWANYVKGVIQHYRARPLPG----FQAVIVSSVPLGAGLSSSASLEVAVYTFLQ 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10347.494.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LNE1_ECTSI1.080e-8566.67Galactokinase (Galactose kinase) n=2 Tax=Ectocarpu... [more]
A0A836CBL4_9STRA1.230e-3542.05Galactokinase n=1 Tax=Tribonema minus TaxID=303371... [more]
I2CP88_NANGC5.140e-3448.13Galactokinase n=1 Tax=Nannochloropsis gaditana (st... [more]
D7FSK4_ECTSI3.840e-3348.60Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A7S2E1C8_9STRA4.680e-3043.72Hypothetical protein n=1 Tax=Dictyocha speculum Ta... [more]
A0A6S9KLL0_HETAK7.380e-2941.90Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
UPI001B85D0874.530e-2743.62galactokinase n=3 Tax=Passeridae TaxID=9158 RepID=... [more]
A0A7S2G625_9STRA5.780e-2743.02Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
A0A6J2VFX2_CHACN8.990e-2743.78galactokinase n=1 Tax=Chanos chanos TaxID=29144 Re... [more]
A0A8C4CI56_9TELE4.750e-2643.48Galactokinase 1 n=3 Tax=Denticeps clupeoides TaxID... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10347contigS-firma_F_contig10347:348..4748 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LNE1
Preferred nameGALK1
PFAMsGHMP_kinases_C,GHMP_kinases_N,GalKase_gal_bdg
Max annot lvl2759|Eukaryota
KEGG rclassRC00002,RC00078
KEGG koko:K00849
KEGG ReactionR01092
KEGG Pathwayko00052,ko00520,ko01100,map00052,map00520,map01100
KEGG ModuleM00554,M00632
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004335,GO:0005488,GO:0005524,GO:0005534,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0005996,GO:0006012,GO:0006059,GO:0006066,GO:0006082,GO:0006090,GO:0006091,GO:0006096,GO:0006139,GO:0006163,GO:0006164,GO:0006165,GO:0006725,GO:0006732,GO:0006733,GO:0006753,GO:0006754,GO:0006757,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009056,GO:0009058,GO:0009108,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009132,GO:0009135,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009166,GO:0009167,GO:0009168,GO:0009179,GO:0009185,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0016052,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0017144,GO:0018130,GO:0019200,GO:0019318,GO:0019320,GO:0019359,GO:0019362,GO:0019363,GO:0019388,GO:0019400,GO:0019402,GO:0019438,GO:0019439,GO:0019637,GO:0019693,GO:0019751,GO:0019752,GO:0030246,GO:0030554,GO:0032553,GO:0032555,GO:0032559,GO:0032787,GO:0033499,GO:0034404,GO:0034641,GO:0034654,GO:0034655,GO:0035639,GO:0036094,GO:0042866,GO:0043167,GO:0043168,GO:0043436,GO:0044237,GO:0044238,GO:0044248,GO:0044249,GO:0044262,GO:0044270,GO:0044271,GO:0044281,GO:0044282,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046031,GO:0046034,GO:0046365,GO:0046390,GO:0046394,GO:0046434,GO:0046483,GO:0046496,GO:0046700,GO:0046835,GO:0046939,GO:0048029,GO:0051186,GO:0051188,GO:0055086,GO:0061615,GO:0061620,GO:0061622,GO:0061623,GO:0071704,GO:0072330,GO:0072521,GO:0072522,GO:0072524,GO:0072525,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901292,GO:1901293,GO:1901360,GO:1901361,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901575,GO:1901576,GO:1901615
Evalue1.78e-86
EggNOG OGsCOG0153@1|root,KOG0631@2759|Eukaryota
EC2.7.1.6
Descriptiongalactokinase activity
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000,ko04147
Hectar predicted targeting categoryother localisation
Exons6
Model size777
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10347.494.1prot_S-firma_F_contig10347.494.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10347 348..4748 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815566.2267678-CDS-S-firma_F_contig10347:347..5151622815566.2267678-CDS-S-firma_F_contig10347:347..515Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 348..515 -
1696949420.5266962-CDS-S-firma_F_contig10347:347..5151696949420.5266962-CDS-S-firma_F_contig10347:347..515Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 348..515 -
1622815566.242743-CDS-S-firma_F_contig10347:1121..13201622815566.242743-CDS-S-firma_F_contig10347:1121..1320Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 1122..1320 -
1696949420.5382798-CDS-S-firma_F_contig10347:1121..13201696949420.5382798-CDS-S-firma_F_contig10347:1121..1320Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 1122..1320 -
1622815566.2565608-CDS-S-firma_F_contig10347:2019..20481622815566.2565608-CDS-S-firma_F_contig10347:2019..2048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 2020..2048 -
1696949420.546381-CDS-S-firma_F_contig10347:2019..20481696949420.546381-CDS-S-firma_F_contig10347:2019..2048Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 2020..2048 -
1622815566.2695637-CDS-S-firma_F_contig10347:3071..31941622815566.2695637-CDS-S-firma_F_contig10347:3071..3194Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 3072..3194 -
1696949420.5555243-CDS-S-firma_F_contig10347:3071..31941696949420.5555243-CDS-S-firma_F_contig10347:3071..3194Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 3072..3194 -
1622815566.2800684-CDS-S-firma_F_contig10347:3844..39261622815566.2800684-CDS-S-firma_F_contig10347:3844..3926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 3845..3926 -
1696949420.5642226-CDS-S-firma_F_contig10347:3844..39261696949420.5642226-CDS-S-firma_F_contig10347:3844..3926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 3845..3926 -
1622815566.289601-CDS-S-firma_F_contig10347:4572..47481622815566.289601-CDS-S-firma_F_contig10347:4572..4748Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 4573..4748 -
1696949420.5735912-CDS-S-firma_F_contig10347:4572..47481696949420.5735912-CDS-S-firma_F_contig10347:4572..4748Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10347 4573..4748 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10347.494.1

>prot_S-firma_F_contig10347.494.1 ID=prot_S-firma_F_contig10347.494.1|Name=mRNA_S-firma_F_contig10347.494.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=259bp
MALGPRHRHSSRTAASANAASRLASTAAAGFPREKGEEEADGGSRPVGEQ
RRGEGEEERVPTAGELLVKARDLYNDKFGGPVDDADVSAGYAPGRVNLIG
EHTDYSGGFVMPLALERGTVVYGVGRLKDEDEEEINTGSRGWCRVISETM
QQQQQQAEGGGGGEGEAAAEAADVCFRADESLGPGEPEWANYVKGVVKEF
MAKIPEGKRLEFSAMVVGAVPLGGGVSSSASLSVAMATFLQGILSSAGIS
PPSSKVKG*
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mRNA from alignment at S-firma_F_contig10347:348..4748-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10347.494.1 ID=mRNA_S-firma_F_contig10347.494.1|Name=mRNA_S-firma_F_contig10347.494.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=4401bp|location=Sequence derived from alignment at S-firma_F_contig10347:348..4748- (Sphaerotrichia firma ET2_F female)
ATGGCCCTCGGACCACGCCACCGCCACAGCAGCCGTACCGCAGCCAGCGC
TAACGCGGCCTCCCGCCTGGCGTCGACGGCGGCGGCGGGCTTCCCGCGCG
AGAAGGGCGAGGAGGAGGCGGACGGAGGAAGCCGCCCAGTTGGAGAACAG
AGAAGAGGAGAAGGGGAAGAAGAGAGGTACCATGCGTATATACATGTGTG
TGTAATTTATGTGCGCGATATCAAGCCAGCCAGGCGCGGCGCTTGTTGTT
TGGGTGCGTGTAGTGTGGGGAAGAACAAGGCAAAGGGGAAGGGGGGGGCG
GCAAGAGGAGATGCACCCCTGCCCTGGGGGGGGCAGGCACGGCGGTTGTA
TGTTTTGCAGTACCGATAGAGGATACATTACGTGCACACACGCGCGCGCG
CTGGCTGCATATGCGTTGGAAGGCAAGGACTCCGTCGTTAGGCTTGGTTG
GCGTTTGGTTTTTACTGCGCGTTGTTTTGCTGCTGTTGTTGTTGTTGTCG
AAGACGAGCAACGTAAAGCAATTTTGGCGTAACCCGTGGGCAGAGAGAAC
CGCCGGGCAGTGAGAGAGAGAGTTTCCTACACATGTTCGACACATCTTGG
ACAGCTTTTAGGCGGTGTTTTTTTGTGAGGGGCTCAAGAACCGATGTCAG
GAACTCAAACACGTTCACGTTACGTTTCAGCTTTTCATGCGATCCCCGGC
GCCCTCCCCCTCCTCCCTTCCTCCTTCCCATCCTCGATGCCCCCCCTCCT
CCCTTTCTCCCTCCCATCCTCGATGCTTGAACTCTGTCGTGTTTGGACGT
GAACGCGGACGTGAAAACCTAGAGTGCCCACCGCCGGAGAGCTGCTGGTG
AAGGCGCGGGACCTGTACAACGACAAGTTCGGCGGCCCCGTGGATGACGC
GGATGTGCCGTATGTGCGTGTGTGTGCGGCTCTACCGCCGTGGTACTACT
GTAGTGGTGGTTTAGTTTTTGTTTTGCACCATCGGATCTACCACCTTTAC
ACACACACCACCTCCACCTCTACACACAGGGGAGCGCACGTGTGTGTGTG
CCGGAGAACAGCTGTCAGTTTCCTGGTTACGCTAGGGTCCCTCCTCCTTT
TTACAACCTGCTTGGGAAGGCAAAATCTTGAGGGTAAGCCTTGCTTTTGC
CAGCTAGGCGAAAGACGGCGAGCGCTACTATAGGCAAAGAATTGCGTCGT
GCGTATTCCCCTCTTACCCTCGGCGGCCGCGGTGGATGCCAGCACCAAGC
CGACGGGACGATGCTTCGAACAATGACAATGACAATGACAATGCGGTTAG
CGGTGGGTGGAGAGAAAAGGTTTTGTGGCACGCACTTCGCCGATTGGTCA
ACGCACCTGCGGCGGAATTTCGAAAAATTCCCAGAAAAAACAAACAGCTA
CATACATGTGCGAGCAACCGTGCTGCCGCCGCCGCCGCCGCCGTCGTCGT
CGTCGTCAAAAGCAAACCAAAAGCAAACAACCATGACCGAACCTTGTACC
AGGTACACACGAAAACGATAACACCGAATGCCCGAATGGATGCACTTGCA
ATAGGTCTCCGCCGGGTACGCGCCGGGGAGGGTGAACCTGATCGGCGAGC
ACACCGACTACAGCGGGGGGTTCGTGATGCCGCTGGCGCTCGAGCGGGGC
ACCGTCGTCTACGGCGTCGGCCGCCTGGTGAGAAAAACGAAGGTCAACAG
GAGGAGATGGAAGAGGAGATTAAGACGTTCTGGGGTTGCTTGGTTGTTGA
CGTTTCTTTGTGTTTTGTTGGTGAGAGAAACGAAGGTCAACAGGAGGAGG
AGGAAGAGGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAGATTAACACG
TTCTGGGGTTGCTTGGTTGTTGACGTTTCTGTGTTTTTTTTTGGTGAGAG
AAACGAAGGTCAAGAGGAGGAGGAGGAAGAGGAAGAGGAAGAGGAGATTA
TCACGTTCTGGCGTTGTTTGGTTGTTGACGTTTCTTTGTGTTTCGTTGGT
GAGAGAAACGAAGGTCAAGAGGAGGAGGAAGAGGAGATTAACAGGTTCTG
GCGTTGTTTGGTTGTTGACCTTTCTTTGTGTTTCGTTGGTGAGAAAAACG
AAGGTCAACAGGAGGAGGAGGAAGAGGAGATTAGCATGTTCTGGCGTTGT
TTGGTTGGACGTTTCTGTGTGTTTTGTTGGTGAGAAAAACGAAGGTCAAC
AGGAGGAGGAGGAAGAGGAGATGAACAGGTTCTGGCGTTGTCTGGTTGGA
CGTTTCTGTGTGTTTCGTTGGTGAGAAAAACGAAGGTCAAGAGGAGGAGG
AGGAGGAGGAAGATGAAGAGGAGATAAACATGTTCTGGCGTTGTTTGGTT
GGACGTTTCTGTGTGTTCCGTTGGTGAGAGAAACGAAGGTCAAGAGGAGG
AGGGGGAGGAGGAGAAGGAAGATGAAGAGGAGATTAACATGCTCGGCGTT
GTTGGGTTGTTGACGTTTCTGTGTGTTTCGTTGGTGAGAGAAACGAAGGT
CAACAGGAGGAGGAGGAAGAGGAGATTAACAGGTTCTGGCGTTGTTTGGT
TGGACGTTTCTTTGTGTTTCGTTGGTGAGAAAAACGAAGGTCAACAGGAG
GAGGAGGAAGAGGAGATGAACATGTTCTGGCGTTGTTTGGTTGGACGTTT
CTGTGTGTTTCGTTGGTGAGAGAAACGAAGGTCAACAGGAGGAGGAGGAG
AAGGACGAAGATGAAGAGGAGATTAACACGTTCTGGGGTTGTTTGGTTGT
TTACGTTTCTGTGTGTTTCGTTGGTGAGAAAAACGAAGGTCAAGAGGAGG
AGGAGGAGGAGGAAGATGAAGAGGAGATAAACATGTTCTGGCGTTGTTGG
GTTGTTTGAAGTTCTGTGTGTTTCGTTGGTGAGAGAAACGAAGGTCAAGA
GGAGGAGGAAGATGAAGAGGAGATATTCACAGGACGGACGTACACGGCTG
ACGCTTGTAGAAAAATTATTAAGAACGAAGAACGCTGGCTTTGAGCCCAC
GCAGTCCCGCCTCTAAGATGGGGAGGGTTTGTCCCTTGAGGTGTGCCATT
GTAATATTCTTTGAACTTGAGTCTTGTTATTGTCAAAAAAATTTCAACTC
GAGTCTGTTCATTTTCTTTCTTGAGTCTGTTACTGTAATTTTCTTTCAAC
TCGAGTCTGCTATTGTAATTTTTCTTCCAACTTAAGTCTGTAACTGTATT
TTTCTTTCAACTTGAGTCTGTTATTGTAACGTTCTCTCATCTTGAGTCTG
TTTTTGTAGTTGTAATTTCAAAGATCGTGCCCTTCCCTCCCTTCCGTCCC
TCCCTCCCTCCCTGTCGTCCTGAGGTCGACTCTGAGGAGGTCACGGCGAC
CCCGACGACAACGGCCGCGGCGGCGGCGACACCGGCGACAACGGCGACAC
CGGCGGCGGCGGCGACGGATGGCGCGAGCGGCAGCAGGGGCTGGTGCCGC
GTGATTTCGGAGACCATGCAGCAGCAGCAGCAGCAGGCGGAGGGCGGGGG
CGGCGGGGAGGGGGAAGCGGCGGCGGAGGCGGCGGACGTGTGCTTCCGGG
CGGACGAGTCGCTCGGGCCGGGGGAACCGGAGTGGGCGAACTACGTCAAG
GGCGTGGTGAAGGAGTTCATGGCAAAGGTGGGGTGGTGCAGGCGTACTTG
TATGTATGCTCTTTGGCGTGTGTACGTGCGTGCGTGGGCAGGGAATCGAG
GACCGCGTGAGTGTGTAGAGGTCGTCTTTTGGTGGGAAGCAGGTGTATGC
TCTTCGGCGCATGTAGTACGTGTGTGGGCAGGGAATCAAGAGCTGCGTGC
GTGTGTAGAGGTCGTTTTTGGCAAGAAAGAAAAACAGACCAGGCGCCGAC
CGAGGTGGGTTTGAGCAGCCTGGAGCCTGTTGGCAAAGGCGGGACAGCTG
CCTCCGGCGGCGCGCCGCATGGCCACCCGGGAACACGAAGAAAACGCAAC
AATTGATTTGATTGGCCAGAGAGTTGCCGGGGAGAGGGGAGCAGATAGAC
GGGTAGGCCAGCAGCGGCGCGAGCAGGCCAAGTGATGCGGTAAAAGGTAA
AAGGACTGTTCATCCACGCCGTCCAGCCGGCCACACTTTTTGCGCGCGCA
TCTCGTGGACACCAACCCCAACCCCCCCCCCCCCAAAAAAAAAGCAAGAA
ATTCACACGCGCACCCACACCCGAAGCTCACACGCACACGCCGCGGTTTG
GTTTGGTTTGGTTTGGTTTGGGTTTTTGCGCAGATCCCCGAAGGAAAGCG
CCTGGAGTTTTCGGCGATGGTGGTCGGGGCAGTCCCCCTCGGAGGAGGCG
TTTCCAGCTCGGCGTCGCTGTCCGTGGCAATGGCCACCTTCCTGCAGGGT
ATCCTCTCTTCCGCGGGGATATCACCGCCCTCCTCGAAGGTGAAAGGGTA
A
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Coding sequence (CDS) from alignment at S-firma_F_contig10347:348..4748-

>mRNA_S-firma_F_contig10347.494.1 ID=mRNA_S-firma_F_contig10347.494.1|Name=mRNA_S-firma_F_contig10347.494.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1554bp|location=Sequence derived from alignment at S-firma_F_contig10347:348..4748- (Sphaerotrichia firma ET2_F female)
ATGGCCCTCGGACCACGCCACCGCCACAGCAGCCGTACCGCAGCCAGCGC
TAACGCGGCCTCCCGCCTGGCGTCGACGGCGGCGGCGGGCTTCCCGCGCG
AGAAGGGCGAGGAGGAGGCGGACGGAGGAAGCCGCCCAGTTGGAGAACAG
AGAAGAGGAGAAGGGGAAGAAGAGAGATGGCCCTCGGACCACGCCACCGC
CACAGCAGCCGTACCGCAGCCAGCGCTAACGCGGCCTCCCGCCTGGCGTC
GACGGCGGCGGCGGGCTTCCCGCGCGAGAAGGGCGAGGAGGAGGCGGACG
GAGGAAGCCGCCCAGTTGGAGAACAGAGAAGAGGAGAAGGGGAAGAAGAG
AGAGTGCCCACCGCCGGAGAGCTGCTGGTGAAGGCGCGGGACCTGTACAA
CGACAAGTTCGGCGGCCCCGTGGATGACGCGGATAGTGCCCACCGCCGGA
GAGCTGCTGGTGAAGGCGCGGGACCTGTACAACGACAAGTTCGGCGGCCC
CGTGGATGACGCGGATGTCTCCGCCGGGTACGCGCCGGGGAGGGTGAACC
TGATCGGCGAGCACACCGACTACAGCGGGGGGTTCGTGATGCCGCTGGCG
CTCGAGCGGGGCACCGTCGTCTACGGCGTCGGCCGCCTGGTCTCCGCCGG
GTACGCGCCGGGGAGGGTGAACCTGATCGGCGAGCACACCGACTACAGCG
GGGGGTTCGTGATGCCGCTGGCGCTCGAGCGGGGCACCGTCGTCTACGGC
GTCGGCCGCCTGAAGGACGAAGATGAAGAGGAGATTAACACAAGGACGAA
GATGAAGAGGAGATTAACACCGGCAGCAGGGGCTGGTGCCGCGTGATTTC
GGAGACCATGCAGCAGCAGCAGCAGCAGGCGGAGGGCGGGGGCGGCGGGG
AGGGGGAAGCGGCGGCGGAGGCGGCGGACGTGTGCTTCCGGGCGGACGAG
TCGCTCGGGCCGGGGGAACCGGAGTGGGCGAACTACGTCAAGGGCGTGGT
GAAGGAGTTCATGGCAAAGCGGCAGCAGGGGCTGGTGCCGCGTGATTTCG
GAGACCATGCAGCAGCAGCAGCAGCAGGCGGAGGGCGGGGGCGGCGGGGA
GGGGGAAGCGGCGGCGGAGGCGGCGGACGTGTGCTTCCGGGCGGACGAGT
CGCTCGGGCCGGGGGAACCGGAGTGGGCGAACTACGTCAAGGGCGTGGTG
AAGGAGTTCATGGCAAAGATCCCCGAAGGAAAGCGCCTGGAGTTTTCGGC
GATGGTGGTCGGGGCAGTCCCCCTCGGAGGAGGCGTTTCCAGCTCGGCGT
CGCTGTCCGTGGCAATGGCCACCTTCCTGCAGGGTATCCTCTCTTCCGCG
GGGATATCACCGCCCTCCTCGAAGGTGAAAGGGTAAATCCCCGAAGGAAA
GCGCCTGGAGTTTTCGGCGATGGTGGTCGGGGCAGTCCCCCTCGGAGGAG
GCGTTTCCAGCTCGGCGTCGCTGTCCGTGGCAATGGCCACCTTCCTGCAG
GGTATCCTCTCTTCCGCGGGGATATCACCGCCCTCCTCGAAGGTGAAAGG
GTAA
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