mRNA_S-firma_M_contig9748.20740.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9748.20740.1
Unique NamemRNA_S-firma_M_contig9748.20740.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9748.20740.1 vs. uniprot
Match: D8LT03_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LT03_ECTSI)

HSP 1 Score: 146 bits (369), Expect = 1.010e-43
Identity = 72/101 (71.29%), Postives = 85/101 (84.16%), Query Frame = 1 
Query:    1 MDEAFQNRFVPFWHKAFFLSELGLEVPAAAMKFLFGGLEVLCAVLLLTKYKFSAAILLFGLMSLVLMTHLFLGEFAELPTPLVLCLASLGVGFVGFKPLRQ 303
            MDEAF+NRF PFW + FF SE+G+E+ AAA+K +FG  EVLCA LL T +KFSAAI+LFGLMS V++THLFLGEFAELP PLVLCL+SL VGFVG+ PL Q
Sbjct:    1 MDEAFENRFTPFWQEMFFFSEIGVELNAAAVKLIFGSTEVLCAALLFTSHKFSAAIMLFGLMSAVVLTHLFLGEFAELPMPLVLCLSSLAVGFVGYSPLDQ 101
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9748.20740.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LT03_ECTSI1.010e-4371.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9748contigS-firma_M_contig9748:2747..3733 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionexpressed unknown protein
Ec32 orthologEc-08_004330.1
Exons3
Model size306
Cds size306
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9748.20740.1prot_S-firma_M_contig9748.20740.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9748 2747..3733 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828812.3791275-CDS-S-firma_M_contig9748:2746..28561622828812.3791275-CDS-S-firma_M_contig9748:2746..2856Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 2747..2856 +
1697105177.656912-CDS-S-firma_M_contig9748:2746..28561697105177.656912-CDS-S-firma_M_contig9748:2746..2856Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 2747..2856 +
1622828812.3968518-CDS-S-firma_M_contig9748:3233..33301622828812.3968518-CDS-S-firma_M_contig9748:3233..3330Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 3234..3330 +
1697105177.6678374-CDS-S-firma_M_contig9748:3233..33301697105177.6678374-CDS-S-firma_M_contig9748:3233..3330Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 3234..3330 +
1622828812.4125345-CDS-S-firma_M_contig9748:3634..37331622828812.4125345-CDS-S-firma_M_contig9748:3634..3733Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 3635..3733 +
1697105177.6806383-CDS-S-firma_M_contig9748:3634..37331697105177.6806383-CDS-S-firma_M_contig9748:3634..3733Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9748 3635..3733 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9748.20740.1

>prot_S-firma_M_contig9748.20740.1 ID=prot_S-firma_M_contig9748.20740.1|Name=mRNA_S-firma_M_contig9748.20740.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=102bp
MDEAFQNRFVPFWHKAFFLSELGLEVPAAAMKFLFGGLEVLCAVLLLTKY
KFSAAILLFGLMSLVLMTHLFLGEFAELPTPLVLCLASLGVGFVGFKPLR
Q*
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mRNA from alignment at S-firma_M_contig9748:2747..3733+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9748.20740.1 ID=mRNA_S-firma_M_contig9748.20740.1|Name=mRNA_S-firma_M_contig9748.20740.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=987bp|location=Sequence derived from alignment at S-firma_M_contig9748:2747..3733+ (Sphaerotrichia firma Sfir_13m male)
ATGGATGAGGCCTTCCAGAACAGATTCGTCCCGTTCTGGCATAAGGCGTT
CTTCCTCTCTGAGCTGGGGCTGGAGGTTCCCGCGGCGGCGATGAAGTTTC
TTTTCGGAGGGTGAGAAGGAAGGGTGCTACAAGCAGTGATCAATAGCTTT
TCGTTGCCCTTGCTCCGTTCAGGGCGGCCCGTCCTCCTTGTGCAAGCCGA
TCGTTCTGTATTTTTTTTGACGTTTTAACGCTCAGCCCCTGTCTCGCCCC
CTGCTGTGCACAACTACAGTACATTCTGCTTTACACTCTTTCTTCTTCCA
AGATGCGTCACGTGGTCCACCCAACACGGGTCCTGCACCCCACCCCGCTT
CGACCCCTCTCCCACCTGTCTGTGTGTCCGCTTTGCTTTTCATGGAACGA
CGGGTCGTGCGTGGGCACGTGCACACGTTGGTTTTTTTTTTTTTTTTTTT
TTTTTCCCACCACCGGGCTGGGCAAACGGATGGACAGGTTGGAGGTGCTG
TGCGCCGTGCTTCTCCTGACGAAGTACAAGTTCTCGGCGGCGATCCTGCT
CTTCGGGCTCATGTCGCTGGTGCTCATGACACACGTGAGTGTGGGGGTCC
AGTTTGGTAGGGGAAAACTTGCTTGATGCTTCTCGTGGCGATTCGTACGC
GCGCCCTTTCCCTTATCGGTAGTTGAACCCGTTTTTCACGATTTGCAGCA
TCCTCCGGCGAAGCAAGAAACGGTTCACCTAAACCTCACCGGGGTCCGCC
GCAACCCAACTCGTATCGTTGCTATCGAATCCTCCCGCGCCGCTTTCTCC
ACGCCCCCGGCGGCGATCTGACACCCCCACGTCTGCAAAACCTTGTCGCA
CCACACCGCCGTCGTGTTCGTGCTCCTCTTCCTCCCAGCTCTTCTTAGGC
GAGTTCGCCGAGCTGCCAACACCGCTGGTGCTGTGCCTGGCGAGCCTCGG
GGTGGGCTTCGTCGGCTTTAAGCCTCTTAGACAGTAG
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Coding sequence (CDS) from alignment at S-firma_M_contig9748:2747..3733+

>mRNA_S-firma_M_contig9748.20740.1 ID=mRNA_S-firma_M_contig9748.20740.1|Name=mRNA_S-firma_M_contig9748.20740.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=612bp|location=Sequence derived from alignment at S-firma_M_contig9748:2747..3733+ (Sphaerotrichia firma Sfir_13m male)
ATGGATGAGGCCTTCCAGAACAGATTCGTCCCGTTCTGGCATAAGGCGTT
CTTCCTCTCTGAGCTGGGGCTGGAGGTTCCCGCGGCGGCGATGAAGTTTC
TTTTCGGAGGATGGATGAGGCCTTCCAGAACAGATTCGTCCCGTTCTGGC
ATAAGGCGTTCTTCCTCTCTGAGCTGGGGCTGGAGGTTCCCGCGGCGGCG
ATGAAGTTTCTTTTCGGAGGGTTGGAGGTGCTGTGCGCCGTGCTTCTCCT
GACGAAGTACAAGTTCTCGGCGGCGATCCTGCTCTTCGGGCTCATGTCGC
TGGTGCTCATGACACACGTTGGAGGTGCTGTGCGCCGTGCTTCTCCTGAC
GAAGTACAAGTTCTCGGCGGCGATCCTGCTCTTCGGGCTCATGTCGCTGG
TGCTCATGACACACCTCTTCTTAGGCGAGTTCGCCGAGCTGCCAACACCG
CTGGTGCTGTGCCTGGCGAGCCTCGGGGTGGGCTTCGTCGGCTTTAAGCC
TCTTAGACAGTAGCTCTTCTTAGGCGAGTTCGCCGAGCTGCCAACACCGC
TGGTGCTGTGCCTGGCGAGCCTCGGGGTGGGCTTCGTCGGCTTTAAGCCT
CTTAGACAGTAG
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