mRNA_S-firma_M_contig967.20660.1 (mRNA) Sphaerotrichia firma Sfir_13m male
|
Overview
Homology
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7G163_ECTSI (Phytochrome-like protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G163_ECTSI) HSP 1 Score: 234 bits (597), Expect = 1.140e-60 Identity = 139/290 (47.93%), Postives = 172/290 (59.31%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS--DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEE 939
RW+VYCVED+GVG+LP D LVA Y+QVS S GTGLGLH+ H+ M G+LGIASTFA +E+ GGTLFAV+LPL SVE+ AV AG+ DDH +N+KL++ KI+ F S DVQVL+A DG+MA+D R R G S L LAG+F+DFH+PN+ G+ECT+RIR EA NGWPRV I GCTAD+TE R SF AGGD V++KPW PGQVER C+ M+A ALD++
Sbjct: 713 RWHVYCVEDSGVGVLPADLPHLVAAYKQVSHGVQKSYA-GTGLGLHICKAHVEAMFGALGIASTFA-----EEST----SGGTLFAVILPLC----------------SVEEAGAVVDAGSN-----------------------ADDHTVNVKLIEHKIRRHFRGSGADVQVLSATDGLMALDVQTAARHVRVG-----GSGGLVLAGIFMDFHLPNLDGIECTRRIRVLEAANGWPRVTICGCTADVTEGVRSSFQDAGGDEVILKPWRPGQVERACNVMVAKALDDD 948
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H341_SCYLO (Phytochrome (Fragment) n=1 Tax=Scytosiphon lomentaria TaxID=27967 RepID=A0A0K1H341_SCYLO) HSP 1 Score: 213 bits (541), Expect = 1.230e-54 Identity = 135/295 (45.76%), Postives = 174/295 (58.98%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAA--PSSFWGNPP--SRKLTFLVVDDHKLNIKLLQRKIQLTFE--DSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEK 942
+WY+Y VED+GVG+L +D ++ A Y+Q+S S +GTGL L +S ++ MSG L IAST + +E G GTLFA +LPL AA P A A VG+ SKAA P + G+ +RKL FLV DD K+N+KLLQRKI+ F + DVQVLTA DG++A++ VR G+E LAGMF+D MPN+ GVECTKR+R+ E EN WPRV I GCTAD +E++ +F AGGD ++ KPW GQVER C ML A EK
Sbjct: 430 KWYMYVVEDSGVGVLSSDLSRVGAAYQQISHGKRKS-FAGTGLSLRISKAYVDAMSGRLWIASTLS-----EEGKH---GSGTLFAAMLPLSEAATNPGAHSNAVEVGA--------------SKAAPGWPIAIIGHMSLGARKLAFLVADDLKVNVKLLQRKIEKIFSGVEGDVQVLTASDGLLALEAQTAVRTNTGGDE-------WILAGMFVDLRMPNVDGVECTKRVRELEVENHWPRVLIYGCTADTSENAHKTFADAGGDGIIGKPWQSGQVERACKAMLTAAFQSEK 694
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7FU21_ECTSI (Phytochrome-like protein 2 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU21_ECTSI) HSP 1 Score: 212 bits (539), Expect = 1.210e-53 Identity = 135/306 (44.12%), Postives = 173/306 (56.54%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGA-----------VGSVEKRAAVTTAGAAESKAAAPSSFWGNP--------PSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSD--VQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHAL 930
RWYVYCV D G+GI + QLV YRQVS S E G GLGL+V +H+ M G LGIASTF+ G++ GGTLFAV LPL PP E GA VGS V T A PSS G P +K+ LVVDD K+NI L+++KI + F+DS VQVL A DG A++ AF R ++G + + LAG+F+D HMPNM G+ECT++IRQ+E E GW V I G TAD T+++R F AGG ++ KPW PGQVE +C+ M+ ++L
Sbjct: 523 RWYVYCVRDTGIGIQKGELSQLVMAYRQVSH-GVSKEHQGVGLGLNVCKIHVDDMFGGLGIASTFSDE--GNQRR-----GGTLFAVTLPLL----CPPPEEEEGAEPGTVCTTTSRVGSANDEHLVETTKAMAEITNNPSSVSGGGDNGDKGTGPHKKIALLVVDDQKINITLMEKKIAMVFKDSQTAVQVLLATDGKTAIE--AFQGARRDEPNNNGSAGSVVLAGVFMDLHMPNMDGIECTRKIRQSEVERGWLPVPICGFTADTTQTTRERFQDAGGSDIIYKPWQPGQVEDVCNAMVVNSL 814
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A6H5LI29_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LI29_9PHAE) HSP 1 Score: 213 bits (542), Expect = 1.680e-53 Identity = 133/292 (45.55%), Postives = 169/292 (57.88%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKKDT 951
RW VY VED GVG+ D L + YRQ+S A S E +GTGLGLH+SS HI MSG LGIAST A GD + GT+FA +PL + V AGA + + A P +TFLVVDDH +N+KLL+ +I TF+D +QV+TA DG A+ V+ G D D AG+F+DFHMPNM+G+ECT+ +R+ EA+NGW R ISGCTADLTE + F AGGD VL KPW G V+ +CH+M+A AL+ EKK +
Sbjct: 724 RWVVYSVEDTGVGVSRGDILVLTSAYRQLSHGA-SKEYAGTGLGLHISSTHIRTMSGGLGIAST--SAQTGDRKDSS----GTIFACAIPLLVSP--------------------VKIAGAVQDETVADPGTTTTVP-HAVTFLVVDDHAVNVKLLKHRITKTFDDRKLQVITATDGETAIQQWEAVK----GLGKDNDH---VFAGVFIDFHMPNMNGMECTECLRRLEAKNGWSRTPISGCTADLTEKATKQFTDAGGDEVLCKPWRAGDVKSMCHRMIAKALEAEKKSS 980
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H350_PETFA (Phytochrome (Fragment) n=1 Tax=Petalonia fascia TaxID=2893 RepID=A0A0K1H350_PETFA) HSP 1 Score: 207 bits (528), Expect = 8.050e-52 Identity = 126/301 (41.86%), Postives = 171/301 (56.81%), Query Frame = 1
Query: 79 WYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS------DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKKDTEEAK 963
WY YCV+D+GVG+LP D + Y Q+ A+ S SGTGLGLH+S H+S MSG +G+AST +G A ++ GTLFAV LPL G+ +T S A + + +RKL FL VDDH +N+KL++RKI + F+ + DV+V TA DG++A+D L V+ E DD L G+FLDFHMPN+ G+ECTKRIR+ E E GW R+FI GC+AD T+ + +F AGG V+ KPW GQ+E +C ML A + +K + K
Sbjct: 670 WYAYCVKDSGVGLLPDDLPHVGDAYTQIFEGASRSY-SGTGLGLHISKGHVSSMSGGIGVASTASGEAEQGKSS------GTLFAVFLPL---------------CGTTALSLELTPGTGIASGNNADTLQKAHIAARKLVFLAVDDHPVNLKLIERKIGMFFKRTGGDMKVDVEVRTAADGLLALDALVDVQNIT--ECDDA-----VLVGVFLDFHMPNLDGIECTKRIRKLENEKGWSRIFICGCSADPTQQTSDAFQAAGGSDVIYKPWNSGQIEGMCTTMLITAFESSRKGSAAGK 941
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: D7G6T2_ECTSI (Phytochrome-like protein 3 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G6T2_ECTSI) HSP 1 Score: 202 bits (513), Expect = 7.190e-50 Identity = 125/292 (42.81%), Postives = 165/292 (56.51%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDS--DVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEEKK 945
+W+VYCVED+G+G+LP D LV YRQ+S A+ S GTGLGLH+ H+ M GS GIASTF E + GGTLFAVVLPL S E AAV T E++ +N++LL KI+ F+D+ DV+V++A DG +A++ + E + G LAGMF+DFHMP++ G+ECTKRIR EA+NGW R+ I GCTAD T++ R F AGGD V+ KPW PGQVE IC+ M+A+ L+ E+K
Sbjct: 726 KWHVYCVEDSGIGVLPADLPHLVEAYRQISHGASRSHA-GTGLGLHICRTHMEAMCGSFGIASTF------SEKDTS---GGTLFAVVLPL----------------DSEEPGAAVNTQEPLEAE-------------------------VNLRLLDHKIRRFFKDNGADVEVMSATDGFIALE----MHEAARRNQSHGS----VLAGMFIDFHMPDLDGIECTKRIRLLEADNGWSRIMICGCTADPTQAIRRVFQNAGGDEVISKPWCPGQVESICNAMVANVLNAEQK 958
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A6H5KE71_9PHAE (Response regulatory domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KE71_9PHAE) HSP 1 Score: 158 bits (399), Expect = 1.750e-40 Identity = 101/234 (43.16%), Postives = 132/234 (56.41%), Query Frame = 1
Query: 238 MSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQMLAHALDEE 939
MSG LGIAST A GD + GT+FA +PL + V AGA + + A P +TFLVVDD+ +N+KLL+ +I TF+DS +QV+TA DG A+ V+ G D D AG+F+DFHMPNM+G+ECT+ +R+ EA+NGW R ISGCTADLTE + F AGGD VL KPW G V+ +CH+M+A AL+ E
Sbjct: 1 MSGGLGIAST--SAQTGDRKDSS----GTIFACAIPLLVSP--------------------VKIAGAVQDETVADPGKTTTVP-HAVTFLVVDDNAVNVKLLKHRITKTFDDSKLQVITATDGKTAIQQWEAVK----GLGKDNDH---VFAGVFIDFHMPNMNGMECTECLRRLEAKNGWSRTPISGCTADLTEKATKQFTDAGGDEVLCKPWRAGDVKSMCHRMIAKALEAE 200
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A0K1H3J6_9PHAE (Phytochrome n=1 Tax=Ishige okamurae TaxID=233772 RepID=A0A0K1H3J6_9PHAE) HSP 1 Score: 155 bits (391), Expect = 1.020e-34 Identity = 106/282 (37.59%), Postives = 149/282 (52.84%), Query Frame = 1
Query: 76 RWYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPR-VFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQML 918
RW V+ VED GVG+ ++ Y Q+ A + GTGLGLH+ ++++ M G+ G+AST G GTLF +PL P+A ++ + A EK E K+ AP+ P FLVVDD KLN++L +KI L + D+ V+TAMDG +A L V++ RS + PP+ + G+ +D HMP MSGVECT+RIR EAE G R V I TADLT+ +R AG + L KP G++E IC +++
Sbjct: 914 RWCVFSVEDTGVGVPADQLSSMLKAYEQLYHRAAQNTTQGTGLGLHICTMNVKSMGGAFGVAST--------------PGSGTLFRCAIPLEPSATQN--SDDSSAEHGREKER--------EDKSEAPTQKRARPT----VFLVVDDSKLNLRLCSKKITLALGE-DITVMTAMDGWLA---LQIVQQMRSSD------PPVHITGIIMDKHMPGMSGVECTRRIRAMEAERGCVRPVPIIAFTADLTDVAREELKQAGSTAFLSKPSAAGELESICRELV 1157
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: A0A482SBH5_9ARCH (GAF domain-containing protein n=1 Tax=archaeon TaxID=1906665 RepID=A0A482SBH5_9ARCH) HSP 1 Score: 120 bits (300), Expect = 6.860e-24 Identity = 94/310 (30.32%), Postives = 146/310 (47.10%), Query Frame = 1
Query: 79 WYVYCVEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPL----------------RPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAEN---------------GWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQM 915
WYV+ VED+G G+ D ++ Y+Q+S+ S GTGLGLH+ LH+ LM G LG+AST G GT+F LPL R L P ++ +GS + A ++ ++VVDD +N++L +RKIQLT +DV V TA+DG+ A++ + R+G++ + G+F+D+HMP SG++ IR+ E + + +I TADL+E+SR + AG + VL KP G++E IC+++
Sbjct: 731 WYVHEVEDSGCGVSSEDLSRIFDAYKQLSS-GVSKVYQGTGLGLHICRLHVELMGGILGVASTL--------------GVGTVFMFALPLNMFLDKLVQEEEEITGRKRPRLHPDEDKIDNIGSTVQSVA----------------------TKDDIYIVVDDSNVNLRLTKRKIQLTL-GNDVTVRTAVDGLEAIEL--YHELLRTGKQGQ-------VRGIFMDYHMPRCSGLDAIIEIRKKELHHIQTLTNSSEDDSSMMAFTPCYIIAFTADLSETSRKGLINAGANEVLAKPTPSGEMETICNRL 993
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Match: UPI001AE57860 (ATP-binding protein n=1 Tax=Asticcacaulis solisilvae TaxID=1217274 RepID=UPI001AE57860) HSP 1 Score: 86.7 bits (213), Expect = 7.690e-14 Identity = 80/274 (29.20%), Postives = 114/274 (41.61%), Query Frame = 1
Query: 94 VEDNGVGILPTDFGQLVAKYRQVSTTATSSECSGTGLGLHVSSLHISLMSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAGAVGSVEKRAAVTTAGAAESKAAAPSSFWGNPPSRKLTFLVVDDHKLNIKLLQRKIQLTFEDSDVQVLTAMDGVMAMDTLAFVRECRSGEEDDGDSPPLFLAGMFLDFHMPNMSGVECTKRIRQAEAENGWPRVFISGCTADLTESSRGSFLGAGGDSVLIKPWGPGQVERICHQM 915
V D GVGI P + K+ Q T+ T + GTGLGL +S I +M G++ + S G G+ F+V LPLRPAAP P AA P+ +R L+V+D N+ + + ED V A G A+ L + + A + +D MP M G+ECT+RIRQ EA++G + I G TA S R AG D+ L KP+ P + ++ +M
Sbjct: 318 VSDTGVGIAPQKLATIFEKFVQADTSVTR-KYGGTGLGLAISKTLIDIMGGTINVESVE--------------GQGSRFSVRLPLRPAAPAPDAA---------------------------PAEVPDAIDARGQKILLVEDSPANVVVASHLL----EDYGYGVDVAEHGAAALSKL--------------QTGTAYFA-ILMDVQMPVMDGLECTRRIRQDEADHGKRHMPIIGMTAHAQASDREKCFAAGMDAYLPKPFDPRDLRKLLVEM 530 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig967.20660.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_M_contig967.20660.1 >prot_S-firma_M_contig967.20660.1 ID=prot_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=262bp MSGSLGIASTFAGAAAGDETPVAPGGGGTLFAVVLPLRPAAPLPPAAERAback to top mRNA from alignment at S-firma_M_contig967:2941..6473- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_M_contig967.20660.1 ID=mRNA_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3533bp|location=Sequence derived from alignment at S-firma_M_contig967:2941..6473- (Sphaerotrichia firma Sfir_13m male)back to top Coding sequence (CDS) from alignment at S-firma_M_contig967:2941..6473- >mRNA_S-firma_M_contig967.20660.1 ID=mRNA_S-firma_M_contig967.20660.1|Name=mRNA_S-firma_M_contig967.20660.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1572bp|location=Sequence derived from alignment at S-firma_M_contig967:2941..6473- (Sphaerotrichia firma Sfir_13m male)back to top |