prot_S-firma_M_contig9388.20361.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9388.20361.1
Unique Nameprot_S-firma_M_contig9388.20361.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length234
Homology
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: D8LIE4_ECTSI (Helicase C-terminal domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LIE4_ECTSI)

HSP 1 Score: 351 bits (901), Expect = 3.390e-116
Identity = 188/239 (78.66%), Postives = 201/239 (84.10%), Query Frame = 0
Query:    1 KQDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPT-QGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVMSMSTALGLSSEFCGED----GMGGAFSVEHVGSLAAEAMSLVDADGGAEMGGDCSHPLLEAKTPGELALLVKHYRLLQGAKSAETLLTVTGREGKEAMSASGWDVSQLSVGDRIGKDSFLRVSGEASL 234
            K+DRGRAL+AFRSGEVSTLTNCGVLTEGFDAP+CDTIVMCRPTQSAPLYMQMIGRGTRP L PT Q         GA++T+S RR+ IA SPKPRMHVIDLVDNCGKHKVMSMS ALGLSS F G+D    GMGGAFSVEHVGSLAAEAMSLVDADG AE+   CSHPLLEAKTP ELALLVKHYRLLQGAK+AET LTVTGR   +  S+ GWD+SQL VGDRIGKDSFLRV  EA L
Sbjct:  160 KKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPYCDTIVMCRPTQSAPLYMQMIGRGTRPWLSPTPQVRPANNADAGADSTASRRRSDIAASPKPRMHVIDLVDNCGKHKVMSMSAALGLSSGFRGDDAGTDGMGGAFSVEHVGSLAAEAMSLVDADGAAEVENACSHPLLEAKTPRELALLVKHYRLLQGAKTAETTLTVTGRGANDGTSSPGWDLSQLCVGDRIGKDSFLRVIVEAIL 398          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A6H5L5W6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L5W6_9PHAE)

HSP 1 Score: 129 bits (325), Expect = 2.350e-33
Identity = 68/90 (75.56%), Postives = 73/90 (81.11%), Query Frame = 0
Query:  145 MSLVDADGGAEMGGDCSHPLLEAKTPGELALLVKHYRLLQGAKSAETLLTVTGREGKEAMSASGWDVSQLSVGDRIGKDSFLRVSGEASL 234
            MSLVDADG AE+   C HPLLEAKTP ELALLVKHYRLLQGAK+AET LTVTGR   + +S  GWD+SQL VGDRIGKDSFLRV  EA L
Sbjct:    1 MSLVDADGAAEVENACLHPLLEAKTPRELALLVKHYRLLQGAKAAETTLTVTGRGANDGISPPGWDLSQLYVGDRIGKDSFLRVVVEAIL 90          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A6H5L6G6_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L6G6_9PHAE)

HSP 1 Score: 127 bits (318), Expect = 6.620e-31
Identity = 60/64 (93.75%), Postives = 62/64 (96.88%), Query Frame = 0
Query:    1 KQDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPT 64
            K+DRGRAL+AFRSGEVSTLTNCGVLTEGFDAP CDTIVMCRPTQSAPLYMQMIGRGTRP LPPT
Sbjct:  309 KKDRGRALAAFRSGEVSTLTNCGVLTEGFDAPSCDTIVMCRPTQSAPLYMQMIGRGTRPWLPPT 372          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A835YHM4_9STRA (P-loop containing nucleoside triphosphate hydrolase protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YHM4_9STRA)

HSP 1 Score: 103 bits (257), Expect = 9.980e-22
Identity = 60/131 (45.80%), Postives = 77/131 (58.78%), Query Frame = 0
Query:    2 QDRGRALSAFRSGEVSTLTNCGVLTE--------GFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVMSMSTALGLSSEFCG 124
            ++R   +  FR+G+++ +TN GV TE        GFDAP  +T+VM RPT S PL+MQMIGRGTRP           E    AE     RR+AI  S KP M ++D+VDNCGKHKV +  + LGL   F G
Sbjct:  386 EERRAIIERFRAGDLAVVTNFGVFTEVHITNVQQGFDAPHVNTVVMARPTMSQPLFMQMIGRGTRPAPGVLDSLYSAEGPMSAEL----RRSAIDKSHKPWMRLVDVVDNCGKHKVKTAGSVLGLHPLFFG 512          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A3M1F660_9DELT (DEAD/DEAH box helicase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A3M1F660_9DELT)

HSP 1 Score: 88.6 bits (218), Expect = 1.400e-16
Identity = 51/122 (41.80%), Postives = 67/122 (54.92%), Query Frame = 0
Query:    1 KQDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVMSMSTALGLSSEF 122
            K++R   L AFRSG +  +TNC +LTEGFD P  +TI+M RPT+S+ LY QMIGRGTR        TA G                     K R+ VID+VDN  +H ++S+ +  GL   F
Sbjct:  293 KEERRDVLEAFRSGRIQVITNCNLLTEGFDDPEVETIIMARPTKSSLLYTQMIGRGTR--------TAPG---------------------KERLTVIDVVDNASRHDLVSLPSLFGLPPHF 385          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A5C7M1D7_9HYPH (DEAD/DEAH box helicase n=1 Tax=Hyphomicrobiaceae bacterium TaxID=2015799 RepID=A0A5C7M1D7_9HYPH)

HSP 1 Score: 83.2 bits (204), Expect = 9.660e-15
Identity = 48/107 (44.86%), Postives = 65/107 (60.75%), Query Frame = 0
Query:    4 RGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVM 110
            R + +S F+SG++  L NCGV TEGFDAP    + + RPT+S  LY+QM+GRGTRP LP   GT  G        T+ GR  AI  S KP   V+D +   G+H+++
Sbjct:  300 RRQIVSDFKSGQIQYLVNCGVATEGFDAPNVRVVAIGRPTKSRALYLQMLGRGTRP-LP---GTVDGI------DTAMGRLAAINASDKPYCTVMDFIGQAGRHELV 396          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A840J8U0_9PSEU (Superfamily II DNA or RNA helicase n=1 Tax=Amycolatopsis jiangsuensis TaxID=1181879 RepID=A0A840J8U0_9PSEU)

HSP 1 Score: 82.8 bits (203), Expect = 1.380e-14
Identity = 46/116 (39.66%), Postives = 62/116 (53.45%), Query Frame = 0
Query:    2 QDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVMSMSTALG 117
            + R   L+ F  GE+  LTNC VLTEGFDAP+C  +V+ RPT SAPLY+QM GRG RP                      G+R+A+         ++D+V   GKHK+ S++   G
Sbjct:  335 EQRRETLARFARGELQVLTNCMVLTEGFDAPWCSAVVIARPTSSAPLYIQMAGRGLRP--------------------HPGKRDAV---------ILDVVGVTGKHKLASIADLAG 421          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A538PLH7_9DELT (DEAD/DEAH box helicase n=2 Tax=Deltaproteobacteria bacterium TaxID=2026735 RepID=A0A538PLH7_9DELT)

HSP 1 Score: 77.0 bits (188), Expect = 1.230e-12
Identity = 45/116 (38.79%), Postives = 56/116 (48.28%), Query Frame = 0
Query:    3 DRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKHKVMSMSTALGL 118
            DR   L  F  GE+S LTNC VLTEGFD P  D ++M RPTQS+ LY QM+GRGTR                                 K  + VID+VDN  +HK+  ++    L
Sbjct:  255 DRRDTLRRFSHGELSVLTNCNVLTEGFDEPRVDCVIMARPTQSSLLYAQMVGRGTR-----------------------------LHDTKSDLVVIDIVDNSARHKLAGLNALFDL 341          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A6M1M183_9HYPH (DEAD/DEAH box helicase family protein n=3 Tax=Methylobacterium TaxID=407 RepID=A0A6M1M183_9HYPH)

HSP 1 Score: 77.0 bits (188), Expect = 1.340e-12
Identity = 46/105 (43.81%), Postives = 56/105 (53.33%), Query Frame = 0
Query:    3 DRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDNCGKH 107
            +R R ++ FR G +  LTN  VLT GFDAP  D I M RPT S  LY+Q++GRGTRP  P        +     E T   RR AIA S K    V+D   N  +H
Sbjct:  300 ERDRLVAQFREGRIRCLTNAMVLTTGFDAPGVDLIAMLRPTLSTGLYVQILGRGTRPVYP--------DGFDANEATPEERRVAIAESVKANCLVLDFAQNVLRH 396          
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Match: A0A0M7QB54_9CAUD (Superfamily II DNA/RNA helicase [Enterobacteria phage 9g] n=12 Tax=root TaxID=1 RepID=A0A0M7QB54_9CAUD)

HSP 1 Score: 75.9 bits (185), Expect = 3.320e-12
Identity = 44/102 (43.14%), Postives = 54/102 (52.94%), Query Frame = 0
Query:    2 QDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYMQMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDLVDN 103
            ++R   +  F+ GE   LTN  VLT GFD P  D I+M RPT SA L++QM+GRGTRP              G   +T  GR  AIA SPK    V+D   N
Sbjct:  291 KERDEIIEKFKRGEFRALTNNNVLTTGFDHPMLDLIIMLRPTASAVLWVQMLGRGTRPVY----------AEGFDLSTQEGRLQAIAASPKQNCLVLDFSGN 382          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9388.20361.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LIE4_ECTSI3.390e-11678.66Helicase C-terminal domain-containing protein n=1 ... [more]
A0A6H5L5W6_9PHAE2.350e-3375.56Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L6G6_9PHAE6.620e-3193.75Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835YHM4_9STRA9.980e-2245.80P-loop containing nucleoside triphosphate hydrolas... [more]
A0A3M1F660_9DELT1.400e-1641.80DEAD/DEAH box helicase n=2 Tax=Deltaproteobacteria... [more]
A0A5C7M1D7_9HYPH9.660e-1544.86DEAD/DEAH box helicase n=1 Tax=Hyphomicrobiaceae b... [more]
A0A840J8U0_9PSEU1.380e-1439.66Superfamily II DNA or RNA helicase n=1 Tax=Amycola... [more]
A0A538PLH7_9DELT1.230e-1238.79DEAD/DEAH box helicase n=2 Tax=Deltaproteobacteria... [more]
A0A6M1M183_9HYPH1.340e-1243.81DEAD/DEAH box helicase family protein n=3 Tax=Meth... [more]
A0A0M7QB54_9CAUD3.320e-1243.14Superfamily II DNA/RNA helicase [Enterobacteria ph... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001650Helicase, C-terminalPFAMPF00271Helicase_Ccoord: 2..58
e-value: 2.2E-6
score: 28.0
NoneNo IPR availableGENE3D3.40.50.300coord: 1..115
e-value: 2.5E-19
score: 71.7
IPR027417P-loop containing nucleoside triphosphate hydrolaseSUPERFAMILY52540P-loop containing nucleoside triphosphate hydrolasescoord: 2..59

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9388contigS-firma_M_contig9388:237..3607 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9388.20361.1mRNA_S-firma_M_contig9388.20361.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9388 237..3607 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9388.20361.1 ID=prot_S-firma_M_contig9388.20361.1|Name=mRNA_S-firma_M_contig9388.20361.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=234bp
KQDRGRALSAFRSGEVSTLTNCGVLTEGFDAPFCDTIVMCRPTQSAPLYM
QMIGRGTRPCLPPTQGTAGGEVAGGAETTSSGRRNAIAGSPKPRMHVIDL
VDNCGKHKVMSMSTALGLSSEFCGEDGMGGAFSVEHVGSLAAEAMSLVDA
DGGAEMGGDCSHPLLEAKTPGELALLVKHYRLLQGAKSAETLLTVTGREG
KEAMSASGWDVSQLSVGDRIGKDSFLRVSGEASL
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR027417P-loop_NTPase
IPR001650Helicase_C