mRNA_S-firma_M_contig936.20328.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig936.20328.1
Unique NamemRNA_S-firma_M_contig936.20328.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig936.20328.1 vs. uniprot
Match: A0A6H5L5T7_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5L5T7_9PHAE)

HSP 1 Score: 162 bits (411), Expect = 1.270e-47
Identity = 99/174 (56.90%), Postives = 121/174 (69.54%), Query Frame = 1 
Query:    1 MIRRFWRRSGIPLDHIFATAARVYRRSRLRPALSRWHTSAVLETRRINRRTDAATSIQSLVRMFLARPVVGQYCRARGPAAVEASKVIQSGFRAQKARKTVAERQTRRQKREELWEVQRRNETARSKRERRAASIVIQAVWRAAVGRAEVAERARRKLGAVLVDLGGGQGRMHR 522
            MIRRFWR SG+PLDHIFATAA VYRRSRLR ALS WH+ A  ET  IN R +AA  IQ   R+F+AR    +  R RGPA + AS++IQ+ FR++KAR   A+   R+Q R+EL +    +ETA+ ++ RR AS VIQA WR A GRA    RARR L  VL +LGGG+GRMHR
Sbjct:   30 MIRRFWRSSGLPLDHIFATAAGVYRRSRLRTALSTWHSVAKAETHHINYRIEAAEVIQRATRVFIARHTAERRRRVRGPAVLAASRMIQAEFRSRKARVKTADVAVRQQNRQELRKRYWCDETAKDEQRRRDASTVIQAAWRGAAGRAAGLNRARRTLRGVLNELGGGRGRMHR 203
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig936.20328.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L5T7_9PHAE1.270e-4756.90Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig936contigS-firma_M_contig936:4254..5192 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-28_003450.1
Exons2
Model size522
Cds size522
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828766.3254783-CDS-S-firma_M_contig936:4253..42821622828766.3254783-CDS-S-firma_M_contig936:4253..4282Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 4254..4282 +
1697105149.6728797-CDS-S-firma_M_contig936:4253..42821697105149.6728797-CDS-S-firma_M_contig936:4253..4282Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 4254..4282 +
1622828766.3429923-CDS-S-firma_M_contig936:4699..51921622828766.3429923-CDS-S-firma_M_contig936:4699..5192Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 4700..5192 +
1697105149.684903-CDS-S-firma_M_contig936:4699..51921697105149.684903-CDS-S-firma_M_contig936:4699..5192Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig936 4700..5192 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig936.20328.1prot_S-firma_M_contig936.20328.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig936 4254..5192 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig936.20328.1

>prot_S-firma_M_contig936.20328.1 ID=prot_S-firma_M_contig936.20328.1|Name=mRNA_S-firma_M_contig936.20328.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=174bp
MIRRFWRRSGIPLDHIFATAARVYRRSRLRPALSRWHTSAVLETRRINRR
TDAATSIQSLVRMFLARPVVGQYCRARGPAAVEASKVIQSGFRAQKARKT
VAERQTRRQKREELWEVQRRNETARSKRERRAASIVIQAVWRAAVGRAEV
AERARRKLGAVLVDLGGGQGRMHR
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mRNA from alignment at S-firma_M_contig936:4254..5192+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig936.20328.1 ID=mRNA_S-firma_M_contig936.20328.1|Name=mRNA_S-firma_M_contig936.20328.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=939bp|location=Sequence derived from alignment at S-firma_M_contig936:4254..5192+ (Sphaerotrichia firma Sfir_13m male)
ATGATTCGCCGGTTCTGGCGGCGATCCGGGTGAGGGTTGATATTGTTGCG
AGGTTGGATGGTACTGGCCTCGCAAAACATCTTCGGCATGGTGGATTCGA
ACCCGCCAGTGTTTCATTACCACGTTACAGCAGCGTAGGCGGCGTTCTTT
GGCGGATCGAAGTACCTGAGACCTGCTCTCGCTTCATCAGCCCTCTCATA
TGGCAACAACGCAACATGCTCAGTTCGTCCGCTCCTCGTGGACTCAAGGA
TGCCGACATCAAGTCAAGATGCCTGAAATGCAAAATATGCGTTGTCTCAT
AGACTACATACACTAGTGTGAGGACGCAATGTCGAAGGCTATGCGCATCT
GTCTTGTGGATCCGGTGATCACAGGCCGAGAGCCCGACTAGTGTGCCAAA
CAGACTGATGATCCATCTTTGAGGAACACGCTTTCGGCTTTGCCAGGATC
CCCCTGGACCACATCTTTGCGACGGCTGCGAGAGTCTACCGCCGGTCTCG
TCTCCGTCCAGCGCTTTCGAGATGGCACACATCCGCCGTCTTGGAAACCC
GCCGCATCAACCGCCGCACCGACGCCGCCACCAGCATCCAGAGCTTGGTT
CGCATGTTTCTTGCAAGACCTGTGGTTGGGCAGTACTGCCGCGCGAGGGG
CCCGGCAGCGGTAGAGGCCTCAAAGGTCATTCAGAGCGGGTTTCGAGCGC
AGAAAGCGCGAAAAACCGTTGCTGAGCGACAAACTCGTAGGCAGAAGCGT
GAAGAGCTTTGGGAAGTTCAGCGGCGGAACGAGACAGCCCGATCTAAGCG
AGAGCGACGGGCAGCGTCGATCGTGATCCAAGCGGTCTGGAGGGCAGCTG
TTGGGCGCGCGGAGGTAGCGGAGAGGGCTCGACGAAAGCTTGGGGCGGTG
CTTGTTGACCTAGGAGGCGGCCAGGGCCGTATGCACAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig936:4254..5192+

>mRNA_S-firma_M_contig936.20328.1 ID=mRNA_S-firma_M_contig936.20328.1|Name=mRNA_S-firma_M_contig936.20328.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1044bp|location=Sequence derived from alignment at S-firma_M_contig936:4254..5192+ (Sphaerotrichia firma Sfir_13m male)
ATGATTCGCCGGTTCTGGCGGCGATCCGGATGATTCGCCGGTTCTGGCGG
CGATCCGGGATCCCCCTGGACCACATCTTTGCGACGGCTGCGAGAGTCTA
CCGCCGGTCTCGTCTCCGTCCAGCGCTTTCGAGATGGCACACATCCGCCG
TCTTGGAAACCCGCCGCATCAACCGCCGCACCGACGCCGCCACCAGCATC
CAGAGCTTGGTTCGCATGTTTCTTGCAAGACCTGTGGTTGGGCAGTACTG
CCGCGCGAGGGGCCCGGCAGCGGTAGAGGCCTCAAAGGTCATTCAGAGCG
GGTTTCGAGCGCAGAAAGCGCGAAAAACCGTTGCTGAGCGACAAACTCGT
AGGCAGAAGCGTGAAGAGCTTTGGGAAGTTCAGCGGCGGAACGAGACAGC
CCGATCTAAGCGAGAGCGACGGGCAGCGTCGATCGTGATCCAAGCGGTCT
GGAGGGCAGCTGTTGGGCGCGCGGAGGTAGCGGAGAGGGCTCGACGAAAG
CTTGGGGCGGTGCTTGTTGACCTAGGAGGCGGCCAGGGCCGTATGCACAG
GGATCCCCCTGGACCACATCTTTGCGACGGCTGCGAGAGTCTACCGCCGG
TCTCGTCTCCGTCCAGCGCTTTCGAGATGGCACACATCCGCCGTCTTGGA
AACCCGCCGCATCAACCGCCGCACCGACGCCGCCACCAGCATCCAGAGCT
TGGTTCGCATGTTTCTTGCAAGACCTGTGGTTGGGCAGTACTGCCGCGCG
AGGGGCCCGGCAGCGGTAGAGGCCTCAAAGGTCATTCAGAGCGGGTTTCG
AGCGCAGAAAGCGCGAAAAACCGTTGCTGAGCGACAAACTCGTAGGCAGA
AGCGTGAAGAGCTTTGGGAAGTTCAGCGGCGGAACGAGACAGCCCGATCT
AAGCGAGAGCGACGGGCAGCGTCGATCGTGATCCAAGCGGTCTGGAGGGC
AGCTGTTGGGCGCGCGGAGGTAGCGGAGAGGGCTCGACGAAAGCTTGGGG
CGGTGCTTGTTGACCTAGGAGGCGGCCAGGGCCGTATGCACAGG
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