prot_S-firma_M_contig9282.20233.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9282.20233.1
Unique Nameprot_S-firma_M_contig9282.20233.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length239
Homology
[Close]
BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 6.970e-43
Identity = 144/212 (67.92%), Postives = 155/212 (73.11%), Query Frame = 0 
Query:   21 PASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX---------KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXXVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAAXXXXXXXXXXXXXXXXNSAL-FYNPFEDT-GPIDDDMDGSDSAG 221
            PASPI  RFE+LAS+FLQP SSXXXXXXXXXXXXX         KSRKISLPKSIGRKI ASRSS  GVL R ++ SFSA            XXXXX     VCAVAHRAALTLEEQWETLSDMA CTSRL+ +DAARVQLSGIPRLESAR+LH  G LALLPGDGAA   XXXXXXXXXXXXX     FYNPFE+  G +DD  +  +  G
Sbjct:    2 PASPIQHRFETLASDFLQPASSXXXXXXXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVLGR-REASFSATGPPLLPIEAAGXXXXXS----VCAVAHRAALTLEEQWETLSDMALCTSRLSPEDAARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXXXXFYNPFEEAVGGMDDXXESENGDG 206
[Close]
BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.030e-34
Identity = 115/158 (72.78%), Postives = 124/158 (78.48%), Query Frame = 0 
Query:    2 GSASRDAFLGSGHARSPTAPASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX----KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXX-VCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSG 154
            G++SRDAFLGSGH RSPT PASPI  RFE+LAS+FL P SS XXXXXXXXXXXX    KSRKISLPKSIGRKI ASRSS  GV+ R ++ SFSA           XXXXXXXXXXX VCAVAHRAALTLEEQWETLSDMA CTSRL+ +D ARVQ  G
Sbjct:  666 GNSSRDAFLGSGHVRSPTMPASPIQHRFETLASDFLHPASSSXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVVGR-REASFSAMAPPLLPVEAAXXXXXXXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQGGG 820
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI6.970e-4367.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE3.030e-3472.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9282contigS-firma_M_contig9282:249..3643 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9282.20233.1mRNA_S-firma_M_contig9282.20233.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9282 247..3643 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9282.20233.1 ID=prot_S-firma_M_contig9282.20233.1|Name=mRNA_S-firma_M_contig9282.20233.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=239bp
GGSASRDAFLGSGHARSPTAPASPIHQRFESLASEFLQPGSSSSSSSAAA
TAAAKKSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAAAPPPSSPE
VGGGGGGGGGGGGVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARV
QLSGIPRLESARILHFDGPLALLPGDGAAAAAAAASTVSSSDAASNSALF
YNPFEDTGPIDDDMDGSDSAGDGGGGGGGGDIDDLGGES
back to top