mRNA_S-firma_M_contig9282.20233.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9282.20233.1
Unique NamemRNA_S-firma_M_contig9282.20233.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Match: D8LGF7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGF7_ECTSI)

HSP 1 Score: 164 bits (416), Expect = 6.970e-43
Identity = 144/212 (67.92%), Postives = 155/212 (73.11%), Query Frame = 1 
Query:   61 PASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX---------KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXXVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSGIPRLESARILHFDGPLALLPGDGAAXXXXXXXXXXXXXXXXNSAL-FYNPFEDT-GPIDDDMDGSDSAG 663
            PASPI  RFE+LAS+FLQP SSXXXXXXXXXXXXX         KSRKISLPKSIGRKI ASRSS  GVL R ++ SFSA            XXXXX     VCAVAHRAALTLEEQWETLSDMA CTSRL+ +DAARVQLSGIPRLESAR+LH  G LALLPGDGAA   XXXXXXXXXXXXX     FYNPFE+  G +DD  +  +  G
Sbjct:    2 PASPIQHRFETLASDFLQPASSXXXXXXXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVLGR-REASFSATGPPLLPIEAAGXXXXXS----VCAVAHRAALTLEEQWETLSDMALCTSRLSPEDAARVQLSGIPRLESARLLHLHGGLALLPGDGAASQAXXXXXXXXXXXXXXXXXXFYNPFEEAVGGMDDXXESENGDG 206
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BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Match: A0A6H5J9H9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J9H9_9PHAE)

HSP 1 Score: 140 bits (352), Expect = 3.030e-34
Identity = 115/158 (72.78%), Postives = 124/158 (78.48%), Query Frame = 1 
Query:    4 GSASRDAFLGSGHARSPTAPASPIHQRFESLASEFLQPGSSXXXXXXXXXXXXX----KSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAXXXXXXXXXXXXXXXXXXXXXX-VCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARVQLSG 462
            G++SRDAFLGSGH RSPT PASPI  RFE+LAS+FL P SS XXXXXXXXXXXX    KSRKISLPKSIGRKI ASRSS  GV+ R ++ SFSA           XXXXXXXXXXX VCAVAHRAALTLEEQWETLSDMA CTSRL+ +D ARVQ  G
Sbjct:  666 GNSSRDAFLGSGHVRSPTMPASPIQHRFETLASDFLHPASSSXXXXXXXXXXXXXGAKKSRKISLPKSIGRKIQASRSS--GVVGR-REASFSAMAPPLLPVEAAXXXXXXXXXXXSVCAVAHRAALTLEEQWETLSDMALCTSRLSPEDVARVQGGG 820
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9282.20233.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LGF7_ECTSI6.970e-4367.92Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5J9H9_9PHAE3.030e-3472.78Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9282contigS-firma_M_contig9282:247..3643 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size721
Cds size717
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9282.20233.1prot_S-firma_M_contig9282.20233.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9282 249..3643 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828756.418294-CDS-S-firma_M_contig9282:248..5121622828756.418294-CDS-S-firma_M_contig9282:248..512Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 249..512 -
1697105143.7465594-CDS-S-firma_M_contig9282:248..5121697105143.7465594-CDS-S-firma_M_contig9282:248..512Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 249..512 -
1622828756.4323053-CDS-S-firma_M_contig9282:1372..16331622828756.4323053-CDS-S-firma_M_contig9282:1372..1633Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 1373..1633 -
1697105143.755667-CDS-S-firma_M_contig9282:1372..16331697105143.755667-CDS-S-firma_M_contig9282:1372..1633Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 1373..1633 -
1622828756.444606-CDS-S-firma_M_contig9282:2679..28221622828756.444606-CDS-S-firma_M_contig9282:2679..2822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 2680..2822 -
1697105143.7654097-CDS-S-firma_M_contig9282:2679..28221697105143.7654097-CDS-S-firma_M_contig9282:2679..2822Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 2680..2822 -
1622828756.458362-CDS-S-firma_M_contig9282:3594..36431622828756.458362-CDS-S-firma_M_contig9282:3594..3643Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 3595..3643 -
1697105143.7754028-CDS-S-firma_M_contig9282:3594..36431697105143.7754028-CDS-S-firma_M_contig9282:3594..3643Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9282 3595..3643 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9282.20233.1

>prot_S-firma_M_contig9282.20233.1 ID=prot_S-firma_M_contig9282.20233.1|Name=mRNA_S-firma_M_contig9282.20233.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=239bp
GGSASRDAFLGSGHARSPTAPASPIHQRFESLASEFLQPGSSSSSSSAAA
TAAAKKSRKISLPKSIGRKIHASRSSSSGVLSRSKDPSFSAAAPPPSSPE
VGGGGGGGGGGGGVCAVAHRAALTLEEQWETLSDMAQCTSRLTAQDAARV
QLSGIPRLESARILHFDGPLALLPGDGAAAAAAAASTVSSSDAASNSALF
YNPFEDTGPIDDDMDGSDSAGDGGGGGGGGDIDDLGGES
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mRNA from alignment at S-firma_M_contig9282:247..3643-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9282.20233.1 ID=mRNA_S-firma_M_contig9282.20233.1|Name=mRNA_S-firma_M_contig9282.20233.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=3397bp|location=Sequence derived from alignment at S-firma_M_contig9282:247..3643- (Sphaerotrichia firma Sfir_13m male)
GGGGGCAGCGCCAGCCGCGACGCTTTCTTGGGGTCGGGCCACGCTCGGAG
TGAGAAATTTGTTGTTGTTGTTGTCGTTGTTGTTGTTGTTGTTGGTGTTG
TTGTTGTTGTTGGTGGTGGTGGTGGTGGTGGTGGTGTTGTTGTTGTTGTT
GTTGTTGTTGGTGGTGGTGGTGGTGGTGTTGTTGTTGTGTTTTTTTTTGC
GAGTTTGAACAAACGAACACACAAATAATACCCGGCGATCTCTGCGCGGT
GTTGGTGGGGTGTGTGGTTTGCGGTCCCGGTACGGAGATGTGTGTGTGTG
TGTGCGTGTGTTGTGTGCGTGTCATTTCTGCCTGTTCGATTTCAGCCGCG
TGTACATCTGTGGGTCGTCTAGCTAGTCGCCGTAGTGGAGGATGGGAGCC
AGTGGAGCAGACGACAGAAACACTAATGGGAGAACAAAAAAGAAAAAAAA
ACATCTGCCGACATGGCGCCGCCCTGTTGGGCTCATCTCTTAACCTTTCG
CCCCGCCCCGCCCCGCCCCGCCCCGCGCCTGACGTTTCCTTGCCGCCGTT
CGCGCGCTCCTCGAACCCCCCAATATCGCCGACACCGCGGCATCGACACG
GCATCAAACGATTGGAATGGAACGGAACGAACGATTGGAACGGAACGGAA
CGATTGGAACGACACGGAACGAAACGGAACGGAACGATTGGAACGGAATG
GAACGATTGGAACGGAACGGAACGATATGAACGAAACGGAACGGAACGAT
TGGAACGAAACGGAACGGAACGGAACGGAACGGAAACGGAAACTGAACGA
AACCATCCGAAACACCCGCAGGCCCGACCGCGCCGGCCTCGCCGATCCAC
CAGCGCTTCGAGAGCCTGGCGTCGGAGTTCCTGCAGCCGGGCTCGTCCTC
CTCCTCCTCCTCCGCGGCCGCCACCGCCGCCGCGAAGAAGAGCCGCAAGA
TCTCCCTCCCGAAGGTAAGACTTTACAACGGGGTTGATATAGCAAGATTT
CCCTCCCGAAGCTGAGACGTACAACGGGGTTGATATATATATAGAAGTAT
ATATGTATAATACAGCAGTACTTCTATACGAAGTATAGATATATACTTCG
AAGTATACCAGATTTTGGTTCCAGAGAGGTGTGTGTGTTTTTCTGTTGGT
GTGTGTGTTTAGTAGGGGTGTCAGGCTGCCTGCCTTCCTTCCAAGGAGAG
AGGCTACGGCTGGTCCTAGCGGAAGGTTTGTGGAATCACTGACTCGTGGT
GCGACAGATTTTGAACTGAACCGCCATGGGCTTTGTTCAATTCCGACGTT
TTATTTTTATTTTTGGGAGGTTTGTGGAATGACTATCTCGTTTTGCGAGA
GATTTCGAACTGAACCGCCAACGGCTTTGTTCAATTCCGACGATTTTTTT
TTTCCTTGTTTGAAATCCCAGGGTTGCGTGTAAAATAACAAGCGTTTAGT
AAAACGTAGTTTGGAGGGAAAACAAGCTGCTCCCTCTGTCTCGCCCCATC
TCCTGCGCGTGCGCTCTCTCCCCCTCGTAACCCCCACCCACGTACACAGC
CTCCGCTGTCCACTAACAACCCTCACCCCCGCAGCAGTAGGCTAGACGTA
GTGCTGCATCGCGGAACGACCGCATGTCATCATCGTCCAACCTTCACCCA
ACCCTCCTTCAACGTATTCTCCTTCTTGTTTCGTGTGTCGTTCGGCCACC
ACCGCCACCGCCACCACCACCACCACCACCAACGACAACAACAACAACAA
CAACAACAACAACAACAACAACAACAACAACGACACAACCACCAACACCA
ACACCAACACCACCACCACCGCCACCACCACCACCACCACCACTAACACC
ACCAACACCACCAACACCACCACCAACACCAACACCAACAACACCAACAA
CAACAACGACAACAACACCACCACCACCACCAACACCAACACCACCAACG
CCACCAACGCCACCACCAACACCACCAACACCACCACCAACAACGACAAC
GACAACCCAGTCCATCGGCCGCAAGATCCACGCCTCCCGCAGCAGCAGCA
GCGGCGTCCTCAGCCGCAGCAAGGACCCCTCCTTTTCCGCGGCCGCCCCG
CCCCCGTCGTCGCCGGAGGTAGGAGGCGGCGGCGGCGGCGGCGGCGGCGG
GGGGGGAGTCTGTGCCGTGGCCCATCGGGCGGCGCTGACGCTGGAGGAGC
AGTGGGAGACGCTATCGGACATGGCCCAGTGCACCTCACGGCTGACCGCA
CAGGACGCGGCGAGAGTCCAGGTATTGTGTTGTACTTCGTTTATATTATA
TTGTGTTGTATTGCTATTTTATATTTATTGTATACTTCGTATTATGTTAT
TATTGTTTTATTTGCCATCCGACAATTGCAGATGTTTCCAACAAAATCTT
AAACTTTACCTGTCGTACTCCTGTTGTATTGTACCAGTAGTGTGTTGTGT
TGTATTGTAGACAAGTGCGTTTTTGGCTCTCGTGGTACATGATCGTAGTG
ATTTTTTTGTTTTTTATGTCCGAAGTTGATCAGATGGAGAACGAACAAAA
GCGGCGAGGGTTCGGGTGAACAATAAGAAGAAATCAGGAAAATGTACGTT
TATGGGTTGATTTTTTTTAATGGGATCGGGAACGACCGTCCACCCAAGAA
AGAGACGAGAGGGAGGCTCGCGGTGAAGCAGGCGACGGCATTGTTGAAGA
GCAGCTTGCCAACCACGCGTTCTCTTTCGTGTGACCTAGATAGGCGAACG
CGCCCCCGAACCGAAAACTAAACCAGTCGAGCCACCAGTGATCGAAACGA
AAATCGCAACAACACGTCGAGAGCATGAACACGCCTCAAACACGTGGCTT
CTGCCTTTGATGATTGGTCTGTCCTGGCTGCTTCTCCCTTTTTTTTGTTC
CTTGTTCCATCCCGAAGCGAAACACACACACACACACACACACACACACA
CACACACACACACGCAAAAAAAATGAGGGTTAGTGGTGTCTACAAAAATC
CCCCCTGGAACGACTCATTCACGGGACGGACGTACGTCTACGGCTGACGC
GTAACACGTAGAAAACTTACCAAAAATCGAACCCGTGACACAACCGTAAA
CAACGAAACAAACCAACACAACACAACACAGCTGTCGGGCATCCCTCGCC
TGGAGTCGGCGCGAATCCTCCACTTCGACGGGCCCCTGGCGCTCCTGCCG
GGGGACGGGGCGGCGGCGGCGGCGGCGGCGGCGTCTACGGTCTCCTCCTC
CGACGCCGCGAGCAACAGCGCCCTCTTCTACAACCCCTTCGAGGACACCG
GCCCGATAGACGACGACATGGACGGCTCCGATAGCGCCGGGGACGGCGGC
GGCGGCGGCGGCGGCGGGGACATCGATGACCTCGGGGGGGAATCAGG
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Coding sequence (CDS) from alignment at S-firma_M_contig9282:247..3643-

>mRNA_S-firma_M_contig9282.20233.1 ID=mRNA_S-firma_M_contig9282.20233.1|Name=mRNA_S-firma_M_contig9282.20233.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1434bp|location=Sequence derived from alignment at S-firma_M_contig9282:247..3643- (Sphaerotrichia firma Sfir_13m male)
GGGGGCAGCGCCAGCCGCGACGCTTTCTTGGGGTCGGGCCACGCTCGGAG
GGGGCAGCGCCAGCCGCGACGCTTTCTTGGGGTCGGGCCACGCTCGGAGC
CCGACCGCGCCGGCCTCGCCGATCCACCAGCGCTTCGAGAGCCTGGCGTC
GGAGTTCCTGCAGCCGGGCTCGTCCTCCTCCTCCTCCTCCGCGGCCGCCA
CCGCCGCCGCGAAGAAGAGCCGCAAGATCTCCCTCCCGAAGGCCCGACCG
CGCCGGCCTCGCCGATCCACCAGCGCTTCGAGAGCCTGGCGTCGGAGTTC
CTGCAGCCGGGCTCGTCCTCCTCCTCCTCCTCCGCGGCCGCCACCGCCGC
CGCGAAGAAGAGCCGCAAGATCTCCCTCCCGAAGTCCATCGGCCGCAAGA
TCCACGCCTCCCGCAGCAGCAGCAGCGGCGTCCTCAGCCGCAGCAAGGAC
CCCTCCTTTTCCGCGGCCGCCCCGCCCCCGTCGTCGCCGGAGGTAGGAGG
CGGCGGCGGCGGCGGCGGCGGCGGGGGGGGAGTCTGTGCCGTGGCCCATC
GGGCGGCGCTGACGCTGGAGGAGCAGTGGGAGACGCTATCGGACATGGCC
CAGTGCACCTCACGGCTGACCGCACAGGACGCGGCGAGAGTCCAGTCCAT
CGGCCGCAAGATCCACGCCTCCCGCAGCAGCAGCAGCGGCGTCCTCAGCC
GCAGCAAGGACCCCTCCTTTTCCGCGGCCGCCCCGCCCCCGTCGTCGCCG
GAGGTAGGAGGCGGCGGCGGCGGCGGCGGCGGCGGGGGGGGAGTCTGTGC
CGTGGCCCATCGGGCGGCGCTGACGCTGGAGGAGCAGTGGGAGACGCTAT
CGGACATGGCCCAGTGCACCTCACGGCTGACCGCACAGGACGCGGCGAGA
GTCCAGCTGTCGGGCATCCCTCGCCTGGAGTCGGCGCGAATCCTCCACTT
CGACGGGCCCCTGGCGCTCCTGCCGGGGGACGGGGCGGCGGCGGCGGCGG
CGGCGGCGTCTACGGTCTCCTCCTCCGACGCCGCGAGCAACAGCGCCCTC
TTCTACAACCCCTTCGAGGACACCGGCCCGATAGACGACGACATGGACGG
CTCCGATAGCGCCGGGGACGGCGGCGGCGGCGGCGGCGGCGGGGACATCG
ATGACCTCGGGGGGGAATCACTGTCGGGCATCCCTCGCCTGGAGTCGGCG
CGAATCCTCCACTTCGACGGGCCCCTGGCGCTCCTGCCGGGGGACGGGGC
GGCGGCGGCGGCGGCGGCGGCGTCTACGGTCTCCTCCTCCGACGCCGCGA
GCAACAGCGCCCTCTTCTACAACCCCTTCGAGGACACCGGCCCGATAGAC
GACGACATGGACGGCTCCGATAGCGCCGGGGACGGCGGCGGCGGCGGCGG
CGGCGGGGACATCGATGACCTCGGGGGGGAATCA
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