mRNA_S-firma_F_contig1034.482.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1034.482.1
Unique NamemRNA_S-firma_F_contig1034.482.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1034.482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1034contigS-firma_F_contig1034:3863..4185 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size323
Cds size312
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.9881923-CDS-S-firma_F_contig1034:3862..41741622815564.9881923-CDS-S-firma_F_contig1034:3862..4174Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 3863..4174 +
1696949419.671635-CDS-S-firma_F_contig1034:3862..41741696949419.671635-CDS-S-firma_F_contig1034:3862..4174Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1034 3863..4174 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815564.99964-UTR-S-firma_F_contig1034:4174..41851622815564.99964-UTR-S-firma_F_contig1034:4174..4185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1034 4175..4185 +
1696949419.6882486-UTR-S-firma_F_contig1034:4174..41851696949419.6882486-UTR-S-firma_F_contig1034:4174..4185Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig1034 4175..4185 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1034.482.1prot_S-firma_F_contig1034.482.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1034 3863..4174 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1034.482.1

>prot_S-firma_F_contig1034.482.1 ID=prot_S-firma_F_contig1034.482.1|Name=mRNA_S-firma_F_contig1034.482.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=104bp
MWAQVRLLHASTHLAEAVVFKAPASCVVLCCVVLCFPHSRCDACIGRLAL
PCAAQLRADKNAFQEIGNKEIDKKHPCISTVLTFVALNRFVAYLHRQPSH
LFS*
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mRNA from alignment at S-firma_F_contig1034:3863..4185+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1034.482.1 ID=mRNA_S-firma_F_contig1034.482.1|Name=mRNA_S-firma_F_contig1034.482.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=323bp|location=Sequence derived from alignment at S-firma_F_contig1034:3863..4185+ (Sphaerotrichia firma ET2_F female)
ATGTGGGCACAGGTGCGTTTGCTGCACGCTTCTACTCATCTGGCGGAGGC
GGTCGTATTCAAGGCTCCAGCTAGTTGTGTTGTGTTGTGTTGTGTTGTGT
TGTGTTTCCCGCATTCTCGATGCGATGCCTGCATAGGGCGTCTGGCCTTG
CCGTGTGCAGCTCAACTTCGTGCCGACAAAAATGCTTTCCAAGAGATTGG
CAACAAAGAGATTGACAAGAAACATCCATGTATTTCCACGGTACTTACGT
TTGTTGCTTTGAATCGTTTCGTAGCGTACTTGCACCGCCAGCCATCACAC
CTCTTCTCGTAGTGACCATGTCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1034:3863..4185+

>mRNA_S-firma_F_contig1034.482.1 ID=mRNA_S-firma_F_contig1034.482.1|Name=mRNA_S-firma_F_contig1034.482.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=624bp|location=Sequence derived from alignment at S-firma_F_contig1034:3863..4185+ (Sphaerotrichia firma ET2_F female)
ATGTGGGCACAGGTGCGTTTGCTGCACGCTTCTACTCATCTGGCGGAGGC
GGTCGTATTCAAGGCTCCAGCTAGTTGTGTTGTGTTGTGTTGTGTTGTGT
TGTGTTTCCCGCATTCTCGATGCGATGCCTGCATAGGGCGTCTGGCCTTG
CCGTGTGCAGCTCAACTTCGTGCCGACAAAAATGCTTTCCAAGAGATTGG
CAACAAAGAGATTGACAAGAAACATCCATGTATTTCCACGGTACTTACGT
TTGTTGCTTTGAATCGTTTCGTAGCGTACTTGCACCGCCAGCCATCACAC
CTCTTCTCGTAGATGTGGGCACAGGTGCGTTTGCTGCACGCTTCTACTCA
TCTGGCGGAGGCGGTCGTATTCAAGGCTCCAGCTAGTTGTGTTGTGTTGT
GTTGTGTTGTGTTGTGTTTCCCGCATTCTCGATGCGATGCCTGCATAGGG
CGTCTGGCCTTGCCGTGTGCAGCTCAACTTCGTGCCGACAAAAATGCTTT
CCAAGAGATTGGCAACAAAGAGATTGACAAGAAACATCCATGTATTTCCA
CGGTACTTACGTTTGTTGCTTTGAATCGTTTCGTAGCGTACTTGCACCGC
CAGCCATCACACCTCTTCTCGTAG
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