prot_S-firma_M_contig9115.20060.1 (polypeptide) Sphaerotrichia firma Sfir_13m male

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_M_contig9115.20060.1
Unique Nameprot_S-firma_M_contig9115.20060.1
Typepolypeptide
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Sequence length216
Homology
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BLAST of mRNA_S-firma_M_contig9115.20060.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 229 bits (583), Expect = 8.120e-70
Identity = 117/182 (64.29%), Postives = 140/182 (76.92%), Query Frame = 0 
Query:    1 MGAAQRVKDPDMALELHTQALKGKKNTTKWFHPTAVQILAEAGRLEEALGVAETLRTGGSNDLPKLPPASYNILCRCCKERGDKARVVKLVQAMRKGKSSTYLPPPDAIGFVVEAFTENGKAKEVIALFDRMRAQNIQPDPEVYVLLADAAVAADDRPKAALFVELVEKKGGGRPSAKAVAF 182
            M AA+ +KD D ALELH Q+L+GK+   +WFHP A+Q+LAEAGRLEEA  +AETLRT G    PKLPP SY++LCRCCK+ G+KA VVK+VQ MRKG  S YLPPPD +GFVVEAF E G   EV+ LF+RMRAQ IQP+PEVYVLLADAA AA+D P+   F E+ EK GG + SA A+AF
Sbjct:  267 MKAAEGLKDADWALELHEQSLEGKQKHGRWFHPIALQVLAEAGRLEEAFRIAETLRTSGH---PKLPPTSYHVLCRCCKQHGEKALVVKVVQTMRKGTMSLYLPPPDVLGFVVEAFIEKGIPGEVLTLFERMRAQRIQPNPEVYVLLADAAAAANDLPQTVHFAEMAEK-GGRKASAGALAF 444
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9115.20060.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK81_ECTSI8.120e-7064.29Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma male
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 112..140
e-value: 6.3E-4
score: 17.7
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..196
e-value: 1.4E-14
score: 56.2

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9115contigS-firma_M_contig9115:1941..4155 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma male2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9115.20060.1mRNA_S-firma_M_contig9115.20060.1Sphaerotrichia firma Sfir_13m malemRNAS-firma_M_contig9115 1231..4194 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_M_contig9115.20060.1 ID=prot_S-firma_M_contig9115.20060.1|Name=mRNA_S-firma_M_contig9115.20060.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=216bp
MGAAQRVKDPDMALELHTQALKGKKNTTKWFHPTAVQILAEAGRLEEALG
VAETLRTGGSNDLPKLPPASYNILCRCCKERGDKARVVKLVQAMRKGKSS
TYLPPPDAIGFVVEAFTENGKAKEVIALFDRMRAQNIQPDPEVYVLLADA
AVAADDRPKAALFVELVEKKGGGRPSAKAVAFARGTDIARLRSISSGSTG
SGSPSPMESMESTTT*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat