mRNA_S-firma_M_contig9115.20060.1 (mRNA) Sphaerotrichia firma Sfir_13m male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_M_contig9115.20060.1
Unique NamemRNA_S-firma_M_contig9115.20060.1
TypemRNA
OrganismSphaerotrichia firma Sfir_13m male (Sphaerotrichia firma Sfir_13m male)
Homology
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BLAST of mRNA_S-firma_M_contig9115.20060.1 vs. uniprot
Match: D7FK81_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FK81_ECTSI)

HSP 1 Score: 247 bits (630), Expect = 2.840e-73
Identity = 125/197 (63.45%), Postives = 152/197 (77.16%), Query Frame = 1 
Query:    1 HKKEYTGSVFSLFMGAAQRVKDPDMALELHTQALKGKKNTTKWFHPTAVQILAEAGRLEEALGVAETLRTGGSNDLPKLPPASYNILCRCCKERGDKARVVKLVQAMRKGKSSTYLPPPDAIGFVVEAFTENGKAKEVIALFDRMRAQNIQPDPEVYVLLADAAVAADDRPKAALFVELVEKKGGGRPSAKAVAFAR 591
            +KKE+TGS F +FM AA+ +KD D ALELH Q+L+GK+   +WFHP A+Q+LAEAGRLEEA  +AETLRT G    PKLPP SY++LCRCCK+ G+KA VVK+VQ MRKG  S YLPPPD +GFVVEAF E G   EV+ LF+RMRAQ IQP+PEVYVLLADAA AA+D P+   F E+ EK GG + SA A+AF +
Sbjct:  254 NKKEFTGSTFQVFMKAAEGLKDADWALELHEQSLEGKQKHGRWFHPIALQVLAEAGRLEEAFRIAETLRTSGH---PKLPPTSYHVLCRCCKQHGEKALVVKVVQTMRKGTMSLYLPPPDVLGFVVEAFIEKGIPGEVLTLFERMRAQRIQPNPEVYVLLADAAAAANDLPQTVHFAEMAEK-GGRKASAGALAFTQ 446
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_M_contig9115.20060.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FK81_ECTSI2.840e-7363.45Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_M_contig9115contigS-firma_M_contig9115:1231..4194 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma male vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma Sfir_13m male2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size1397
Cds size648
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_M_contig9115.20060.1prot_S-firma_M_contig9115.20060.1Sphaerotrichia firma Sfir_13m malepolypeptideS-firma_M_contig9115 1941..4155 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828738.053181-UTR-S-firma_M_contig9115:1230..19401622828738.053181-UTR-S-firma_M_contig9115:1230..1940Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9115 1231..1940 -
1697105132.506364-UTR-S-firma_M_contig9115:1230..19401697105132.506364-UTR-S-firma_M_contig9115:1230..1940Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9115 1231..1940 -
1622828738.121208-UTR-S-firma_M_contig9115:4155..41941622828738.121208-UTR-S-firma_M_contig9115:4155..4194Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9115 4156..4194 -
1697105132.5782359-UTR-S-firma_M_contig9115:4155..41941697105132.5782359-UTR-S-firma_M_contig9115:4155..4194Sphaerotrichia firma Sfir_13m maleUTRS-firma_M_contig9115 4156..4194 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622828738.0715594-CDS-S-firma_M_contig9115:1940..21831622828738.0715594-CDS-S-firma_M_contig9115:1940..2183Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 1941..2183 -
1697105132.5221202-CDS-S-firma_M_contig9115:1940..21831697105132.5221202-CDS-S-firma_M_contig9115:1940..2183Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 1941..2183 -
1622828738.0857775-CDS-S-firma_M_contig9115:2422..25511622828738.0857775-CDS-S-firma_M_contig9115:2422..2551Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 2423..2551 -
1697105132.5394776-CDS-S-firma_M_contig9115:2422..25511697105132.5394776-CDS-S-firma_M_contig9115:2422..2551Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 2423..2551 -
1622828738.0969915-CDS-S-firma_M_contig9115:2965..30821622828738.0969915-CDS-S-firma_M_contig9115:2965..3082Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 2966..3082 -
1697105132.55005-CDS-S-firma_M_contig9115:2965..30821697105132.55005-CDS-S-firma_M_contig9115:2965..3082Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 2966..3082 -
1622828738.1086802-CDS-S-firma_M_contig9115:3996..41551622828738.1086802-CDS-S-firma_M_contig9115:3996..4155Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 3997..4155 -
1697105132.5603876-CDS-S-firma_M_contig9115:3996..41551697105132.5603876-CDS-S-firma_M_contig9115:3996..4155Sphaerotrichia firma Sfir_13m maleCDSS-firma_M_contig9115 3997..4155 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_M_contig9115.20060.1

>prot_S-firma_M_contig9115.20060.1 ID=prot_S-firma_M_contig9115.20060.1|Name=mRNA_S-firma_M_contig9115.20060.1|organism=Sphaerotrichia firma Sfir_13m male|type=polypeptide|length=216bp
MGAAQRVKDPDMALELHTQALKGKKNTTKWFHPTAVQILAEAGRLEEALG
VAETLRTGGSNDLPKLPPASYNILCRCCKERGDKARVVKLVQAMRKGKSS
TYLPPPDAIGFVVEAFTENGKAKEVIALFDRMRAQNIQPDPEVYVLLADA
AVAADDRPKAALFVELVEKKGGGRPSAKAVAFARGTDIARLRSISSGSTG
SGSPSPMESMESTTT*
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mRNA from alignment at S-firma_M_contig9115:1231..4194-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_M_contig9115.20060.1 ID=mRNA_S-firma_M_contig9115.20060.1|Name=mRNA_S-firma_M_contig9115.20060.1|organism=Sphaerotrichia firma Sfir_13m male|type=mRNA|length=2964bp|location=Sequence derived from alignment at S-firma_M_contig9115:1231..4194- (Sphaerotrichia firma Sfir_13m male)
CACAAGAAAGAATACACCGGCTCTGTGTTTTCGCTGTTCATGGGGGCGGC
GCAGCGGGTGAAGGACCCGGACATGGCCTTGGAGCTCCACACGCAGGCCC
TCAAGGGCAAGAAGAACACCACGAAATGGTTCCACCCCACAGCCGTCCAG
ATACTGGCCGAGGCGGGCCGGCTGGAGGAGGCTCTCGGGGTCGCGGAGGT
ATGTACGTGGGTGTTGTCGTGTGTGGAAATAAAAGTTTGCGGAGCGGCTG
GTGTTGGGACCAGAACACGTCGTCTTTTTTTTGCTGTGTTTTTTCTTTCC
ACCGCTACGAGTAGCCGTTACGTCGTGTGCGTCATGGCGCACGCTTCCTT
TCGTCGAGAGTCGTTCGAGACTGCCTCTGTAGAAGCTACAATAGTCGGCC
GGTACTCGCGCGGAAGAAGATGCCGTCGTCGGGCAACTCGTGCCAGCAAC
CTCCTGCTGGAGTTTTTCGCGTACTGTTGGGGGGGCTCCGTGCATTGAAC
AATGCCTTTCGACTTGAGAGGGGTGTTGTTCGTGCCGTTGTCTCTTGTCC
CTGTCCCTGTTCTTTTAGGGGTGGTGTTTGGTGTTTTTTTTGCGTCGTAC
CGCAAACACGATGATATTCCGAAACCTACCTAACCCTAGCACAGCTCTCT
CTCTCTCTCTCGCTCGCTCTCTCTCCTCTAGCTGTCTTAGGGTAGTACAT
AGATTTTGTGCACATCTTGCAACACGCAGGGTAGTAAAGTTATTTCGATA
GCGTCGCGTTGGGCATGCATGCCGCACGCCGCCCGAGGGTCGGCCGCTGT
CGTACAGCGCAAGCGCCTCAACAAACACTCCGCGCCGGGAAGATGAGGAA
ATGCGAGGGCAGAGATGGAAGACCGACCACGCGCCACTCGTGGGAACCAC
GCCCACGCAGGCGGAACGGGTACAACTAGAAGTACTCCAATCACGTCACG
CTGACACGAAACGCCCAAGACGCTCGAGAAAGAAACGAGGGTGTCGTTGC
TCTTCTCATCAAGTGTATGTGCGCGCGCATCTGTGCAGAAAAAATCTTGA
TAGCGAGCCCCCCCTCCCCTCCGGTCGTTTCGCCGTTGCCCCTGCTGTGC
CCCCTGCTGCAGACCCTGAGAACCGGTGGTTCGAATGATCTTCCTAAACT
GCCGCCCGCTAGCTACAACATCTTGTGCCGATGTTGCAAGGAGCGCGGTG
ACAAGGCACGCGTGGTGAAGCTCGTCCAGGTATGAAAATCATGTGTGTTT
GTACTAGTGCTGTATGTGTTGTGTCGTTGGACTGGTCCATGGACAAAACG
ATGTGCACGTAGGAACGCGTCGTTAAGAGAAGGTGTTTGTTTTGTGTGTG
TGTTGTCTTTGCACTCGCCCATCGGCGATGGTAAGCGTGTGTAGACTTAC
TTATCCCCAAGGGCGTCGCGTGTCTTCTTAAAAAAGACTCGGGAAGGTTG
CATCGAGAGGTGTTTGGCGCCCGCCCGCCGGGATGGATATCAGCGTCATG
TTTGTGATGTATGGATCATATCACCAACTCTTGTCCCCTGAACGCCATGA
GCTCGGGGGGCTTGTTTTGTTCTCCCGGATGACGCACCCAAGTGCTCCGT
CCCTTGCCCGATGTGCTTCACGTTGTCGGCTATTCCCAAACAGGCCATGC
GGAAAGGGAAGTCGAGCACGTACTTGCCCCCCCCGGACGCGATTGGGTTC
GTGGTGGAGGCCTTCACCGAGAACGGCAAAGCGAAAGAGGTCATAGCTTT
GTTCGACAGGATGCGCGCGCAGGTTTGGAACAACAACAAATCGTGTGTTG
TTCAAGTTCAGTAGACGACGGGTTGCGGTGGTGTGTTGGCAAATGGTTCC
CGGGACTACTCCGCTTTTTTTGTTGTTGCTCCCCTTTGCGCTCTTTCTCT
AAATGCTGCCAGTTTTTGTTGGTAGATTAGCGTGCTGTCCGCTCGTGTTC
GTTTTTCCGCGTGTGCGTCGTGACTTGAACGCCCTCCCCCCCCCCCCTGT
TGCTTGTGCAGAACATCCAACCCGACCCGGAGGTTTACGTGCTCCTGGCC
GACGCCGCCGTTGCCGCGGACGACCGGCCCAAGGCCGCCCTCTTCGTGGA
GTTGGTCGAGAAAAAGGGGGGGGGGCGGCCGAGCGCGAAAGCGGTCGCCT
TTGCGAGGGGTACGGATATCGCTAGATTGCGCAGCATCAGCAGCGGTAGC
ACCGGTAGCGGCAGTCCGTCGCCGATGGAGTCAATGGAGAGCACTACCAC
ATGACGTGTCAGTGTGTGTGTGTGTGTGTGTGTGTTTGTGGTTTGTTTTT
TGGCGACCCTGCTGCCTTTCGTGCTGCTGCTGCTGTTGCTGCTGCTGCTG
CTGCTTTTGTTGGGCGGGTACATGCGACGCGCACGCAAGAGTATTTATCC
GGTGGCAGGATTGCTGGTCCTCGTATGCCCATTGCGGAACGAAGGCGGCA
CGAGCGGACGAGCAGAGTCTTTCCACCGAAGCGAAACAAAACCAAACCAA
CCGCGGGATGGAAGACAAAAACACACACCTCTGTTGGGCGGTATTTGTTG
TGGGGTGCTAGCAGGTTGCTTTCTGTCGGCTCGTGTAGCGAAGAGTCGCG
GGAACTGCCGCTGAGCCAGCGTGTCGTGCATACATCCACGCGGCGGCGTT
TCAGAATTTCGCTTTTCGTCGTGGGAGGAGGAGCTTTGAGGTAGCTTTGA
GGTTGTTGTGCGTCGGAGGGGACAGCGAATCAGATTGAAGCAGTTTTTTG
TTGTTGTCGCGTGTGACACGACCAGACCAGTGTCACTGGCATGAACAAAC
GTTGCCCGTTGGGACGAGTGTCTGAGAAGCAAGTTGGGACGAGTTTCTGA
GAAGCAAGTTGACCGAAGTCCAAGAGGTGACCCCAACAATGACTCCAAGT
TTGTGGTGGCGGGTCACGCGGGCTTCACTCGGCGAAGACGCGTGAAGCAC
AAAACGCGTGGAGC
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Coding sequence (CDS) from alignment at S-firma_M_contig9115:1231..4194-

>mRNA_S-firma_M_contig9115.20060.1 ID=mRNA_S-firma_M_contig9115.20060.1|Name=mRNA_S-firma_M_contig9115.20060.1|organism=Sphaerotrichia firma Sfir_13m male|type=CDS|length=1296bp|location=Sequence derived from alignment at S-firma_M_contig9115:1231..4194- (Sphaerotrichia firma Sfir_13m male)
ATGGGGGCGGCGCAGCGGGTGAAGGACCCGGACATGGCCTTGGAGCTCCA
CACGCAGGCCCTCAAGGGCAAGAAGAACACCACGAAATGGTTCCACCCCA
CAGCCGTCCAGATACTGGCCGAGGCGGGCCGGCTGGAGGAGGCTCTCGGG
GTCGCGGAGATGGGGGCGGCGCAGCGGGTGAAGGACCCGGACATGGCCTT
GGAGCTCCACACGCAGGCCCTCAAGGGCAAGAAGAACACCACGAAATGGT
TCCACCCCACAGCCGTCCAGATACTGGCCGAGGCGGGCCGGCTGGAGGAG
GCTCTCGGGGTCGCGGAGACCCTGAGAACCGGTGGTTCGAATGATCTTCC
TAAACTGCCGCCCGCTAGCTACAACATCTTGTGCCGATGTTGCAAGGAGC
GCGGTGACAAGGCACGCGTGGTGAAGCTCGTCCAGACCCTGAGAACCGGT
GGTTCGAATGATCTTCCTAAACTGCCGCCCGCTAGCTACAACATCTTGTG
CCGATGTTGCAAGGAGCGCGGTGACAAGGCACGCGTGGTGAAGCTCGTCC
AGGCCATGCGGAAAGGGAAGTCGAGCACGTACTTGCCCCCCCCGGACGCG
ATTGGGTTCGTGGTGGAGGCCTTCACCGAGAACGGCAAAGCGAAAGAGGT
CATAGCTTTGTTCGACAGGATGCGCGCGCAGGCCATGCGGAAAGGGAAGT
CGAGCACGTACTTGCCCCCCCCGGACGCGATTGGGTTCGTGGTGGAGGCC
TTCACCGAGAACGGCAAAGCGAAAGAGGTCATAGCTTTGTTCGACAGGAT
GCGCGCGCAGAACATCCAACCCGACCCGGAGGTTTACGTGCTCCTGGCCG
ACGCCGCCGTTGCCGCGGACGACCGGCCCAAGGCCGCCCTCTTCGTGGAG
TTGGTCGAGAAAAAGGGGGGGGGGCGGCCGAGCGCGAAAGCGGTCGCCTT
TGCGAGGGGTACGGATATCGCTAGATTGCGCAGCATCAGCAGCGGTAGCA
CCGGTAGCGGCAGTCCGTCGCCGATGGAGTCAATGGAGAGCACTACCACA
TGAAACATCCAACCCGACCCGGAGGTTTACGTGCTCCTGGCCGACGCCGC
CGTTGCCGCGGACGACCGGCCCAAGGCCGCCCTCTTCGTGGAGTTGGTCG
AGAAAAAGGGGGGGGGGCGGCCGAGCGCGAAAGCGGTCGCCTTTGCGAGG
GGTACGGATATCGCTAGATTGCGCAGCATCAGCAGCGGTAGCACCGGTAG
CGGCAGTCCGTCGCCGATGGAGTCAATGGAGAGCACTACCACATGA
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