prot_S-firma_F_contig10.46.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10.46.1
Unique Nameprot_S-firma_F_contig10.46.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length247
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 4.030e-84
Identity = 147/199 (73.87%), Postives = 159/199 (79.90%), Query Frame = 0 
Query:   30 LPEIGPPKRVMLLPEVHPRSIALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRM--------------DGSSGGWDDGSEGAPEQ----FSVWCPAMRLDPCPPSVQRLLAPGRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPP 210
            LPEIGPPKRVMLLPEVHPRSIALLD+DGN+VTMEMSSG V+RVAEGVESVVDL+GVSEAWEVWEMPLL+HPCYLLRRKGR+              +   G  DDG EG+ E+    FSVWCPAMRLDPCPPSVQRLL PGRA   GG G GM PSPVF+LDPGASCDPERVDLGLQPLLGTMVHASQ      +S+ PP
Sbjct:  981 LPEIGPPKRVMLLPEVHPRSIALLDFDGNMVTMEMSSGMVRRVAEGVESVVDLTGVSEAWEVWEMPLLVHPCYLLRRKGRVGXXXXXXXXXXRRWEQRPGDGDDGDEGSEEEGTEEFSVWCPAMRLDPCPPSVQRLLTPGRATGSGG-GHGMTPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQGGGPSSLSSLPP 1178
[Close]
BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.450e-13
Identity = 66/211 (31.28%), Postives = 93/211 (44.08%), Query Frame = 0 
Query:   33 IGPPKRVMLLPEVHPRSIALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRMDGSSGGWDDGSEGAPEQFSVWCPAMRLDPCPPSVQRLLAPGRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAVCRPR----------VSNTPP-----LPPCYEVRTHLRPILHMV 228
            IG P+R+ L+P V P  + +LD+DGNL  +E+  G  ++              S A              L R++ R+   +    +  E   E++ VWCPA++L+    +       G   E              ALDP A  DPE + LGL    G MV     VCRPR          V+  PP     LPPCYE+RT LRP+LH++
Sbjct:  588 IGAPRRLFLVPAVVPPLLGILDFDGNLAVVELEGGCCRQ----------RRSFSRAKA------------LARQQRRLKREAARLIE--EAYSEEYQVWCPALQLELPDGAFSEDSLDGGTDE------------ALALDPHAYADPESMALGLLARKGAMV-----VCRPRDNAASAGSTAVNGPPPAEPLQLPPCYEMRTRLRPLLHLL 757
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI4.030e-8473.87SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA3.450e-1331.28RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10contigS-firma_F_contig10:18604..20926 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10.46.1mRNA_S-firma_F_contig10.46.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10 18604..20927 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10.46.1 ID=prot_S-firma_F_contig10.46.1|Name=mRNA_S-firma_F_contig10.46.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=247bp
VNAASRGAGEAGLEGEGGGGAKGRGSGLGLPEIGPPKRVMLLPEVHPRSI
ALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHP
CYLLRRKGRMDGSSGGWDDGSEGAPEQFSVWCPAMRLDPCPPSVQRLLAP
GRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAV
CRPRVSNTPPLPPCYEVRTHLRPILHMVLRHLLIASQLQLLDSPPPS
back to top