mRNA_S-firma_F_contig10.46.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10.46.1
Unique NamemRNA_S-firma_F_contig10.46.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 283 bits (725), Expect = 4.030e-84
Identity = 147/199 (73.87%), Postives = 159/199 (79.90%), Query Frame = 1 
Query:   88 LPEIGPPKRVMLLPEVHPRSIALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRM--------------DGSSGGWDDGSEGAPEQ----FSVWCPAMRLDPCPPSVQRLLAPGRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAVCRPRVSNTPP 630
            LPEIGPPKRVMLLPEVHPRSIALLD+DGN+VTMEMSSG V+RVAEGVESVVDL+GVSEAWEVWEMPLL+HPCYLLRRKGR+              +   G  DDG EG+ E+    FSVWCPAMRLDPCPPSVQRLL PGRA   GG G GM PSPVF+LDPGASCDPERVDLGLQPLLGTMVHASQ      +S+ PP
Sbjct:  981 LPEIGPPKRVMLLPEVHPRSIALLDFDGNMVTMEMSSGMVRRVAEGVESVVDLTGVSEAWEVWEMPLLVHPCYLLRRKGRVGXXXXXXXXXXRRWEQRPGDGDDGDEGSEEEGTEEFSVWCPAMRLDPCPPSVQRLLTPGRATGSGG-GHGMTPSPVFSLDPGASCDPERVDLGLQPLLGTMVHASQGGGPSSLSSLPP 1178
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BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Match: A0A835YSR2_9STRA (RIC1 domain-containing protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YSR2_9STRA)

HSP 1 Score: 79.3 bits (194), Expect = 3.450e-13
Identity = 66/211 (31.28%), Postives = 93/211 (44.08%), Query Frame = 1 
Query:   97 IGPPKRVMLLPEVHPRSIALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHPCYLLRRKGRMDGSSGGWDDGSEGAPEQFSVWCPAMRLDPCPPSVQRLLAPGRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAVCRPR----------VSNTPP-----LPPCYEVRTHLRPILHMV 684
            IG P+R+ L+P V P  + +LD+DGNL  +E+  G  ++              S A              L R++ R+   +    +  E   E++ VWCPA++L+    +       G   E              ALDP A  DPE + LGL    G MV     VCRPR          V+  PP     LPPCYE+RT LRP+LH++
Sbjct:  588 IGAPRRLFLVPAVVPPLLGILDFDGNLAVVELEGGCCRQ----------RRSFSRAKA------------LARQQRRLKREAARLIE--EAYSEEYQVWCPALQLELPDGAFSEDSLDGGTDE------------ALALDPHAYADPESMALGLLARKGAMV-----VCRPRDNAASAGSTAVNGPPPAEPLQLPPCYEMRTRLRPLLHLL 757
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10.46.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LB77_ECTSI4.030e-8473.87SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
A0A835YSR2_9STRA3.450e-1331.28RIC1 domain-containing protein n=1 Tax=Tribonema m... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10contigS-firma_F_contig10:18604..20927 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LB77
PFAMsACBP,RIC1
Max annot lvl2759|Eukaryota
KEGG koko:K20476
Evalue6.61e-85
EggNOG OGsKOG2006@1|root,KOG2006@2759|Eukaryota
DescriptionRab guanyl-nucleotide exchange factor activity
COG categoryS
BRITEko00000,ko04131
Hectar predicted targeting categoryother localisation
Exons5
Model size743
Cds size741
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10.46.1prot_S-firma_F_contig10.46.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10 18604..20926 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815520.764241-CDS-S-firma_F_contig10:18603..187461622815520.764241-CDS-S-firma_F_contig10:18603..18746Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 18604..18746 +
1696949382.7389367-CDS-S-firma_F_contig10:18603..187461696949382.7389367-CDS-S-firma_F_contig10:18603..18746Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 18604..18746 +
1622815520.774817-CDS-S-firma_F_contig10:19069..191751622815520.774817-CDS-S-firma_F_contig10:19069..19175Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 19070..19175 +
1696949382.7543547-CDS-S-firma_F_contig10:19069..191751696949382.7543547-CDS-S-firma_F_contig10:19069..19175Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 19070..19175 +
1622815520.7853332-CDS-S-firma_F_contig10:19547..196651622815520.7853332-CDS-S-firma_F_contig10:19547..19665Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 19548..19665 +
1696949382.791333-CDS-S-firma_F_contig10:19547..196651696949382.791333-CDS-S-firma_F_contig10:19547..19665Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 19548..19665 +
1622815520.796753-CDS-S-firma_F_contig10:20176..204031622815520.796753-CDS-S-firma_F_contig10:20176..20403Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 20177..20403 +
1696949382.8709953-CDS-S-firma_F_contig10:20176..204031696949382.8709953-CDS-S-firma_F_contig10:20176..20403Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 20177..20403 +
1622815520.8099525-CDS-S-firma_F_contig10:20779..209261622815520.8099525-CDS-S-firma_F_contig10:20779..20926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 20780..20926 +
1696949382.8949807-CDS-S-firma_F_contig10:20779..209261696949382.8949807-CDS-S-firma_F_contig10:20779..20926Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10 20780..20926 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10.46.1

>prot_S-firma_F_contig10.46.1 ID=prot_S-firma_F_contig10.46.1|Name=mRNA_S-firma_F_contig10.46.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=247bp
VNAASRGAGEAGLEGEGGGGAKGRGSGLGLPEIGPPKRVMLLPEVHPRSI
ALLDYDGNLVTMEMSSGEVKRVAEGVESVVDLSGVSEAWEVWEMPLLIHP
CYLLRRKGRMDGSSGGWDDGSEGAPEQFSVWCPAMRLDPCPPSVQRLLAP
GRAREGGGRGDGMIPSPVFALDPGASCDPERVDLGLQPLLGTMVHASQAV
CRPRVSNTPPLPPCYEVRTHLRPILHMVLRHLLIASQLQLLDSPPPS
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mRNA from alignment at S-firma_F_contig10:18604..20927+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10.46.1 ID=mRNA_S-firma_F_contig10.46.1|Name=mRNA_S-firma_F_contig10.46.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2324bp|location=Sequence derived from alignment at S-firma_F_contig10:18604..20927+ (Sphaerotrichia firma ET2_F female)
GTGAACGCAGCGAGCAGAGGGGCCGGGGAGGCGGGGCTCGAGGGAGAGGG
GGGTGGCGGCGCGAAGGGGAGGGGGTCCGGGCTTGGTTTGCCTGAGATCG
GTCCGCCAAAGCGTGTGATGCTGCTGCCGGAGGTTCACCCTCGGTGAGAC
ATGGGCAACCGGGGGGGGGAAGGGAGCGCCAATCCACGTTTTGGATGTGC
TGAGGGGGACGCTTTCGAGTTGCATGCTACGGCAATGTGCCCCTTTTGTA
CGTGAACCTGGTACATGGTTGGTTCGGTCGTGTGATACGGTACGTGGTTC
AACCGATTCCCATCAAATCTTGTCTTTCATCATTTTTTTTTTTTGTCCTC
TTGCGCTCAGAGTTTTGGGTGCGTTTCATACATCGAAGTGCAGCGTTCTT
CTTCGTGTCTCGGCCGACGACAGCATTCATTCATTCATTCACTCGTTCGT
TCGTTCGTTCGCGCAGGTCTATCGCGTTGCTCGACTACGACGGCAACCTG
GTAACCATGGAGATGAGCAGCGGCGAGGTCAAGAGGGTGGCGGAGGGCGT
GGAGTCCGTGGTCGACCTGTCGGTAAGCTTCTTGGCTACCTATGATATTA
CATTGGTCGACCCGAGGCCGACTCAATGCTGAGAAACTACCAGTGGCGAT
TTAGGGTAACGAGGTTTCGCCGGACGGCAACGATTATTCTGTTCGCACGC
GTACAGCTTCCACGTGAACCACTTGTGGTCTGCTCAGATTTCCAACCCTC
CTCGGCGGTCTGTACCTGTGCGGTAGCTCTGTCTCGGCTTTTTCCGCAGA
GCAAAAGGCTAAGTCTTGTCGCCATGTTTTGTTGGTTGCGTGTGGCGACG
CAACGGGCGGGCGTGCCTTGTGTGCCGTTTTTATTTTTGTGTAAAACCCG
CTCCTCTCTCGTTTCCAATTTTTGTCCATCTTGCCCCGCTACAGGGAGTG
TCGGAAGCCTGGGAGGTGTGGGAAATGCCGCTGCTCATCCACCCTTGCTA
CCTGTTGCGGAGGAAAGGCAGAATGGACGGCAGTAGCGGCGGGTGGGACG
ACGGCAGCGAAGGTGCGATTCTAATCTACCCCGGGGAGGGGGTGGGCTTG
CGTGCAGCGGAACGTTTTTTTGTTTGCTGCAAGGCACTGGAAAGAAGGAA
GAGGAGAGACACCACTAAACAGTAGTTACTTGGGTCTAATAGTGAGGGGA
GGAAAGGGAGAGTTGGAACTATTGCCAGTTAGAACCGGGTCCCTCTTGAA
TTTAGAATTTAGGCCCTGGCACATAATACGCAAGTGTGCTGTTTCGCTGC
CTGCGGGCACGAGTCGATCGATATTCGTATTCCCAGGTAGATTCCCATCT
TCAATTCAGCCCTTTTCTTTAACCCCAACTCGAAGGGATTCCAACTCCTG
CTCGTGTGCGAAGTCGCGTCTTCAAATTTATTCCAAGGTACTCTCACGAT
ACACCAGTACTCCGTACTTCCAGGGAAGCTGGCCTCATAAACTTTGTCAT
CGGGGTCTCAAGGCACTTCAACATCCTTCTGCGTTTTCACGCACACACGC
ACGCACGCACACACACCTCACAGGGGCCCCCGAGCAGTTTTCCGTGTGGT
GCCCGGCCATGCGCCTCGACCCGTGCCCGCCGTCGGTGCAGCGGCTTCTT
GCGCCGGGGAGGGCGAGAGAGGGCGGCGGTAGAGGGGATGGAATGATACC
GTCTCCCGTGTTTGCGCTCGATCCGGGAGCAAGCTGCGATCCGGAGCGAG
TGGATCTGGGGCTGCAGCCGCTGCTGGGAACGATGGTGCATGCCTCGCAG
GTGAGCTAAAAGCGGATTTGTTTCTATTCGCTGAGCGTTTGGCGCCCCCC
CCCCCCCCCTCCCCCCGTTTCTATCCAAGATGTAGTGCTTCCTCCTTCCA
CCTGTGCGCGAGTGGATCCGTCCTGTTGTTCACGGTGGGAGTTAGGGCCG
GCTGGCTTTTGGTCCTCTGGGTTGTCATTCGGGCATTCGCTCCCCCCCCT
CTCAATCAAGCCTTTATCGTGCTGCGGTTTGTTTTCGCGTCGTCGCTTGT
TGTAGGTAGCCTGACATGCTCTTGGAATCGCAATCTGCAAGCCTTCCCGT
TCGCCCTTTCCCCCTCGCCCTAAACACGCCTAGTGCCGTTTGTTCCCCCT
AAAAAAATCGCTCCCTCGCGAAACAGGCGGTTTGTCGTCCCAGGGTCTCC
AACACCCCCCCGCTGCCCCCGTGCTACGAGGTCCGCACCCACCTGCGGCC
CATCCTGCACATGGTCCTCCGACACCTGCTCATCGCCAGCCAGCTGCAGC
TCCTCGACTCGCCGCCGCCGTCCC
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Coding sequence (CDS) from alignment at S-firma_F_contig10:18604..20927+

>mRNA_S-firma_F_contig10.46.1 ID=mRNA_S-firma_F_contig10.46.1|Name=mRNA_S-firma_F_contig10.46.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1482bp|location=Sequence derived from alignment at S-firma_F_contig10:18604..20927+ (Sphaerotrichia firma ET2_F female)
GTGAACGCAGCGAGCAGAGGGGCCGGGGAGGCGGGGCTCGAGGGAGAGGG
GGGTGGCGGCGCGAAGGGGAGGGGGTCCGGGCTTGGTTTGCCTGAGATCG
GTCCGCCAAAGCGTGTGATGCTGCTGCCGGAGGTTCACCCTCGGTGAACG
CAGCGAGCAGAGGGGCCGGGGAGGCGGGGCTCGAGGGAGAGGGGGGTGGC
GGCGCGAAGGGGAGGGGGTCCGGGCTTGGTTTGCCTGAGATCGGTCCGCC
AAAGCGTGTGATGCTGCTGCCGGAGGTTCACCCTCGGTCTATCGCGTTGC
TCGACTACGACGGCAACCTGGTAACCATGGAGATGAGCAGCGGCGAGGTC
AAGAGGGTGGCGGAGGGCGTGGAGTCCGTGGTCGACCTGTCGGTCTATCG
CGTTGCTCGACTACGACGGCAACCTGGTAACCATGGAGATGAGCAGCGGC
GAGGTCAAGAGGGTGGCGGAGGGCGTGGAGTCCGTGGTCGACCTGTCGGG
AGTGTCGGAAGCCTGGGAGGTGTGGGAAATGCCGCTGCTCATCCACCCTT
GCTACCTGTTGCGGAGGAAAGGCAGAATGGACGGCAGTAGCGGCGGGTGG
GACGACGGCAGCGAAGGGAGTGTCGGAAGCCTGGGAGGTGTGGGAAATGC
CGCTGCTCATCCACCCTTGCTACCTGTTGCGGAGGAAAGGCAGAATGGAC
GGCAGTAGCGGCGGGTGGGACGACGGCAGCGAAGGGGCCCCCGAGCAGTT
TTCCGTGTGGTGCCCGGCCATGCGCCTCGACCCGTGCCCGCCGTCGGTGC
AGCGGCTTCTTGCGCCGGGGAGGGCGAGAGAGGGCGGCGGTAGAGGGGAT
GGAATGATACCGTCTCCCGTGTTTGCGCTCGATCCGGGAGCAAGCTGCGA
TCCGGAGCGAGTGGATCTGGGGCTGCAGCCGCTGCTGGGAACGATGGTGC
ATGCCTCGCAGGGGCCCCCGAGCAGTTTTCCGTGTGGTGCCCGGCCATGC
GCCTCGACCCGTGCCCGCCGTCGGTGCAGCGGCTTCTTGCGCCGGGGAGG
GCGAGAGAGGGCGGCGGTAGAGGGGATGGAATGATACCGTCTCCCGTGTT
TGCGCTCGATCCGGGAGCAAGCTGCGATCCGGAGCGAGTGGATCTGGGGC
TGCAGCCGCTGCTGGGAACGATGGTGCATGCCTCGCAGGCGGTTTGTCGT
CCCAGGGTCTCCAACACCCCCCCGCTGCCCCCGTGCTACGAGGTCCGCAC
CCACCTGCGGCCCATCCTGCACATGGTCCTCCGACACCTGCTCATCGCCA
GCCAGCTGCAGCTCCTCGACTCGCCGCCGCCGTCCGCGGTTTGTCGTCCC
AGGGTCTCCAACACCCCCCCGCTGCCCCCGTGCTACGAGGTCCGCACCCA
CCTGCGGCCCATCCTGCACATGGTCCTCCGACACCTGCTCATCGCCAGCC
AGCTGCAGCTCCTCGACTCGCCGCCGCCGTCC
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