mRNA_S-firma_F_contig10300.450.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10300.450.1
Unique NamemRNA_S-firma_F_contig10300.450.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10300.450.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10300contigS-firma_F_contig10300:3477..4383 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size647
Cds size645
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815562.1509519-CDS-S-firma_F_contig10300:3477..40671622815562.1509519-CDS-S-firma_F_contig10300:3477..4067Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10300 3478..4067 -
1696949417.518325-CDS-S-firma_F_contig10300:3477..40671696949417.518325-CDS-S-firma_F_contig10300:3477..4067Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10300 3478..4067 -
1622815562.1666598-CDS-S-firma_F_contig10300:4328..43831622815562.1666598-CDS-S-firma_F_contig10300:4328..4383Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10300 4329..4383 -
1696949417.5355287-CDS-S-firma_F_contig10300:4328..43831696949417.5355287-CDS-S-firma_F_contig10300:4328..4383Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10300 4329..4383 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10300.450.1prot_S-firma_F_contig10300.450.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10300 3478..4383 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10300.450.1

>prot_S-firma_F_contig10300.450.1 ID=prot_S-firma_F_contig10300.450.1|Name=mRNA_S-firma_F_contig10300.450.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=215bp
PAAPRPGAPRHRAAGSSADAPAAADGGSASGTPGDAHPAGGCGRDAHRAD
AATGASAAPAAASSSTVGRQFAAATPAAGGGEGPAAVPPAGGGRQGAVAT
PAPDRRDFDFDFDRPADPTAGDLDGHAYRAGADFGDHTHPAGVVGSGAHP
AAGDFDSHAHPAGVFGSGAHPAAGDVGSAAHPADGGFDGHAHPAGVVVGI
GGRAARGRPAGGCSP
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mRNA from alignment at S-firma_F_contig10300:3477..4383-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10300.450.1 ID=mRNA_S-firma_F_contig10300.450.1|Name=mRNA_S-firma_F_contig10300.450.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=907bp|location=Sequence derived from alignment at S-firma_F_contig10300:3477..4383- (Sphaerotrichia firma ET2_F female)
CCCGCAGCTCCCCGCCCAGGTGCCCCCCGCCACCGCGCAGCAGGCTCCTC
TGCAGGTAAATCGGTAAATCGGGGTGGATTACTTACATGCGCGGGCGGCA
TGAAGGCGTAGTTCTATCGATTCCTAGTTTGTTGTGACGACCGGCTCGGG
CCGGGTCATGCGACACAAGCTCGCGGTAGTGCCATGTTTGTGGATCGTGG
ATAGCTCAGCAATTGGGAACCGACACCTCTCCGTACGTCATGAACAACAC
ATGTACCACAAGTGTTGCATCCAAAATCAACGCTTGCCACCTCTCCCTCT
CGCGGTTTCTTTGCAGACGCCCCCGCCGCCGCAGACGGCGGCTCCGCGAG
TGGCACCCCCGGCGATGCCCACCCCGCCGGTGGCTGCGGCCGTGATGCCC
ACCGTGCAGACGCCGCAACCGGCGCCTCCGCAGCCCCAGCAGCTGCCTCA
AGCAGCACCGTCGGACGCCAATTCGCAGCTGCCACCCCCGCCGCCGGAGG
CGGCGAAGGCCCAGCTGCCGTCCCCCCCGCCGGCGGAGGCCGCCAAGGCG
CCGTCGCCACCCCCGCCCCCGACCGCCGCGACTTCGACTTCGACTTCGAC
CGTCCTGCCGACCCCACCGCCGGCGACCTCGACGGCCATGCCTACCGCGC
CGGCGCCGACTTCGGCGACCATACCCACCCCGCCGGTGTCGTCGGCAGCG
GTGCCCACCCCGCCGCCGGCGACTTCGACAGCCATGCCCATCCCGCCGGT
GTCTTCGGCAGCGGTGCCCACCCCGCCGCCGGCGACGTCGGCAGCGCTGC
CCACCCCGCCGACGGCGGTTTCGACGGCCATGCCCACCCCGCCGGTGTCG
TCGTCGGCATCGGTGGCCGGGCCGCCCGTGGCCGCCCCGCCGGTGGCTGC
TCCCCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10300:3477..4383-

>mRNA_S-firma_F_contig10300.450.1 ID=mRNA_S-firma_F_contig10300.450.1|Name=mRNA_S-firma_F_contig10300.450.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1290bp|location=Sequence derived from alignment at S-firma_F_contig10300:3477..4383- (Sphaerotrichia firma ET2_F female)
CCCGCAGCTCCCCGCCCAGGTGCCCCCCGCCACCGCGCAGCAGGCTCCTC
TGCAGCCCGCAGCTCCCCGCCCAGGTGCCCCCCGCCACCGCGCAGCAGGC
TCCTCTGCAGACGCCCCCGCCGCCGCAGACGGCGGCTCCGCGAGTGGCAC
CCCCGGCGATGCCCACCCCGCCGGTGGCTGCGGCCGTGATGCCCACCGTG
CAGACGCCGCAACCGGCGCCTCCGCAGCCCCAGCAGCTGCCTCAAGCAGC
ACCGTCGGACGCCAATTCGCAGCTGCCACCCCCGCCGCCGGAGGCGGCGA
AGGCCCAGCTGCCGTCCCCCCCGCCGGCGGAGGCCGCCAAGGCGCCGTCG
CCACCCCCGCCCCCGACCGCCGCGACTTCGACTTCGACTTCGACCGTCCT
GCCGACCCCACCGCCGGCGACCTCGACGGCCATGCCTACCGCGCCGGCGC
CGACTTCGGCGACCATACCCACCCCGCCGGTGTCGTCGGCAGCGGTGCCC
ACCCCGCCGCCGGCGACTTCGACAGCCATGCCCATCCCGCCGGTGTCTTC
GGCAGCGGTGCCCACCCCGCCGCCGGCGACGTCGGCAGCGCTGCCCACCC
CGCCGACGGCGGTTTCGACGGCCATGCCCACCCCGCCGGTGTCGTCGTCG
GCATCGGTGGCCGGGCCGCCCGTGGCCGCCCCGCCGGTGGCTGCTCCCCT
ACGCCCCCGCCGCCGCAGACGGCGGCTCCGCGAGTGGCACCCCCGGCGAT
GCCCACCCCGCCGGTGGCTGCGGCCGTGATGCCCACCGTGCAGACGCCGC
AACCGGCGCCTCCGCAGCCCCAGCAGCTGCCTCAAGCAGCACCGTCGGAC
GCCAATTCGCAGCTGCCACCCCCGCCGCCGGAGGCGGCGAAGGCCCAGCT
GCCGTCCCCCCCGCCGGCGGAGGCCGCCAAGGCGCCGTCGCCACCCCCGC
CCCCGACCGCCGCGACTTCGACTTCGACTTCGACCGTCCTGCCGACCCCA
CCGCCGGCGACCTCGACGGCCATGCCTACCGCGCCGGCGCCGACTTCGGC
GACCATACCCACCCCGCCGGTGTCGTCGGCAGCGGTGCCCACCCCGCCGC
CGGCGACTTCGACAGCCATGCCCATCCCGCCGGTGTCTTCGGCAGCGGTG
CCCACCCCGCCGCCGGCGACGTCGGCAGCGCTGCCCACCCCGCCGACGGC
GGTTTCGACGGCCATGCCCACCCCGCCGGTGTCGTCGTCGGCATCGGTGG
CCGGGCCGCCCGTGGCCGCCCCGCCGGTGGCTGCTCCCCT
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