mRNA_S-firma_F_contig10275.411.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10275.411.1
Unique NamemRNA_S-firma_F_contig10275.411.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A6H5KRB1_9PHAE (Tr-type G domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KRB1_9PHAE)

HSP 1 Score: 131 bits (330), Expect = 8.480e-33
Identity = 70/91 (76.92%), Postives = 79/91 (86.81%), Query Frame = 3
Query:  159 PEGDPAPCG*AS-TIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            P   P+ C   +  +GI+AVA EL+RRARVP+RRA+APLYFAFDH FSVRGQGTILTGTVLTG+ KVNQLVELP+LRLQKKVKSMQMFRKP
Sbjct:  246 PPRPPSSCSEETPAMGIEAVAGELTRRARVPSRRASAPLYFAFDHCFSVRGQGTILTGTVLTGEVKVNQLVELPSLRLQKKVKSMQMFRKP 336          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: F0YCG3_AURAN (Putative selenocysteine-specific elongation factor, selB n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YCG3_AURAN)

HSP 1 Score: 92.8 bits (229), Expect = 3.330e-19
Identity = 46/85 (54.12%), Postives = 60/85 (70.59%), Query Frame = 3
Query:  174 APCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            A  G A ++G++ +   L RRAR+P+R    P +FA DH F +RGQGT++TGT L G   VN +VELP + L+KKVKSMQMFRKP
Sbjct:  194 AALGTAPSLGLEGLVETLRRRARMPSRDVEGPFFFAIDHCFPIRGQGTVVTGTALRGACAVNDIVELPEVGLEKKVKSMQMFRKP 278          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A7S4E489_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4E489_9STRA)

HSP 1 Score: 91.7 bits (226), Expect = 8.350e-19
Identity = 45/80 (56.25%), Postives = 57/80 (71.25%), Query Frame = 3
Query:  189 ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            + +IG+D + A L +RARVP R    P +FA DH F +RGQGT++TGT L G  +V   VELP L L+KKVKSMQMFR+P
Sbjct:  196 SESIGLDELVATLRKRARVPKRDTDGPFFFAIDHCFPIRGQGTVVTGTALRGQCRVGDSVELPALGLEKKVKSMQMFRRP 275          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A7S2G4D0_9STRA (Hypothetical protein (Fragment) n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2G4D0_9STRA)

HSP 1 Score: 88.2 bits (217), Expect = 3.390e-18
Identity = 42/78 (53.85%), Postives = 58/78 (74.36%), Query Frame = 3
Query:  198 IGIDAVAAELSRRARVPARRA-AAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            IG+D +   +     +P RR  A P YF+ DH FS++GQGT++TGTVL+G  ++N LVE+P LR++KKVKSMQMFR+P
Sbjct:   88 IGLDTLLEVIHNTVAIPERRCDAEPFYFSIDHCFSIKGQGTVVTGTVLSGKVRINDLVEIPRLRVEKKVKSMQMFRRP 165          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI0018D5C7FD (selenocysteine-specific elongation factor-like n=1 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D5C7FD)

HSP 1 Score: 89.4 bits (220), Expect = 5.250e-18
Identity = 42/76 (55.26%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  201 GIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            G+DA+  EL R+A +P R A+ P+ +A DH FS+RGQGT++TGT+L+G   VN  VE+P L++ +KVKSMQMFR+P
Sbjct:  199 GVDALIEELKRQAYLPQRDASGPMLYAVDHCFSIRGQGTVMTGTMLSGKVVVNDTVEIPALKITRKVKSMQMFRQP 274          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI0006B0DD3F (selenocysteine-specific elongation factor-like n=1 Tax=Limulus polyphemus TaxID=6850 RepID=UPI0006B0DD3F)

HSP 1 Score: 87.8 bits (216), Expect = 1.800e-17
Identity = 44/91 (48.35%), Postives = 63/91 (69.23%), Query Frame = 3
Query:  156 PPEGDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            P  G+ AP      +GI  +   L ++A VP R++A PL F+ DH FS++GQGT++TGTV+ G   VN  +E+P+L++ KKVKSMQMF+KP
Sbjct:  180 PEAGEIAP------VGIQDLIENLIKQAYVPYRKSAGPLLFSVDHCFSIKGQGTVMTGTVIQGSVSVNDTIEMPSLKMTKKVKSMQMFKKP 264          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: A0A813QA35_ADIRI (Hypothetical protein n=3 Tax=Adineta ricciae TaxID=249248 RepID=A0A813QA35_ADIRI)

HSP 1 Score: 87.4 bits (215), Expect = 2.430e-17
Identity = 45/94 (47.87%), Postives = 62/94 (65.96%), Query Frame = 3
Query:  147 STEPPEGDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            ST+ P+    PC  +ST+ ++ V + L     +P R    P  F+ DH FS+RGQGTI+TGTVL+G  K+N  +E+ TL+  +KVKSMQMFRKP
Sbjct:  157 STKFPQTPIIPCSASSTLNLNEVISTLQSYIYIPQRSPDGPFVFSVDHCFSIRGQGTIMTGTVLSGSVKINDSIEITTLKEIRKVKSMQMFRKP 250          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: Q55BS5_DICDI (Tr-type G domain-containing protein n=1 Tax=Dictyostelium discoideum TaxID=44689 RepID=Q55BS5_DICDI)

HSP 1 Score: 87.4 bits (215), Expect = 2.450e-17
Identity = 43/77 (55.84%), Postives = 54/77 (70.13%), Query Frame = 3
Query:  198 IGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            IGID +  EL     +P R A   L F FDH F ++GQGTILTGTVL G  +VNQ++++P L ++KKVKSMQMF KP
Sbjct:  226 IGIDLLTKELLNFINIPKREAKGDLLFEFDHCFQIKGQGTILTGTVLRGSIEVNQIIQIPQLNIEKKVKSMQMFHKP 302          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: UPI001455074F (selenocysteine-specific elongation factor-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI001455074F)

HSP 1 Score: 87.4 bits (215), Expect = 2.460e-17
Identity = 40/76 (52.63%), Postives = 59/76 (77.63%), Query Frame = 3
Query:  201 GIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            G+DA+  EL R++ +P+R ++ P+ +A DH FS+RGQGT++TGT+L G   VN  VE+P L++ +KVKSMQMFR+P
Sbjct:  185 GVDALIEELKRQSYLPSRDSSGPMLYAVDHCFSIRGQGTVMTGTLLRGQIAVNDTVEIPALKITRKVKSMQMFRQP 260          
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Match: V5JUE4_AMBMU (Selenocysteine-specific elongation factor n=1 Tax=Amblyomma maculatum TaxID=34609 RepID=V5JUE4_AMBMU)

HSP 1 Score: 87.0 bits (214), Expect = 3.270e-17
Identity = 43/88 (48.86%), Postives = 60/88 (68.18%), Query Frame = 3
Query:  165 GDPAPCG*ASTIGIDAVAAELSRRARVPARRAAAPLYFAFDHYFSVRGQGTILTGTVLTGDGKVNQLVELPTLRLQKKVKSMQMFRKP 428
            G     G A+ +G+D +   L + AR+P R+   PL  + DH F V+GQGT+LTGT+L G   VN +VE+P+L++ KKVKS+QMFRKP
Sbjct:  174 GGAEDAGQAAALGLDGLVEALCQAARLPERQDKGPLVLSVDHCFLVKGQGTVLTGTILQGSVAVNDVVEIPSLKVTKKVKSIQMFRKP 261          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10275.411.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KRB1_9PHAE8.480e-3376.92Tr-type G domain-containing protein n=2 Tax=Ectoca... [more]
F0YCG3_AURAN3.330e-1954.12Putative selenocysteine-specific elongation factor... [more]
A0A7S4E489_9STRA8.350e-1956.25Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A7S2G4D0_9STRA3.390e-1853.85Hypothetical protein (Fragment) n=1 Tax=Dictyocha ... [more]
UPI0018D5C7FD5.250e-1855.26selenocysteine-specific elongation factor-like n=1... [more]
UPI0006B0DD3F1.800e-1748.35selenocysteine-specific elongation factor-like n=1... [more]
A0A813QA35_ADIRI2.430e-1747.87Hypothetical protein n=3 Tax=Adineta ricciae TaxID... [more]
Q55BS5_DICDI2.450e-1755.84Tr-type G domain-containing protein n=1 Tax=Dictyo... [more]
UPI001455074F2.460e-1752.63selenocysteine-specific elongation factor-like n=1... [more]
V5JUE4_AMBMU3.270e-1748.86Selenocysteine-specific elongation factor n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10275contigS-firma_F_contig10275:2..558 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size429
Cds size429
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815557.8046715-CDS-S-firma_F_contig10275:1..771622815557.8046715-CDS-S-firma_F_contig10275:1..77Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10275 2..77 -
1696949414.200546-CDS-S-firma_F_contig10275:1..771696949414.200546-CDS-S-firma_F_contig10275:1..77Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10275 2..77 -
1622815557.8187623-CDS-S-firma_F_contig10275:205..5581622815557.8187623-CDS-S-firma_F_contig10275:205..558Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10275 206..558 -
1696949414.2134094-CDS-S-firma_F_contig10275:205..5581696949414.2134094-CDS-S-firma_F_contig10275:205..558Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10275 206..558 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10275.411.1prot_S-firma_F_contig10275.411.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10275 2..558 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10275.411.1

>prot_S-firma_F_contig10275.411.1 ID=prot_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=143bp
AGAHPHAPSQSSKGKTKKPPARPSSERSKGSAPGHEKDTASVRVGGGDEA
PSLRRETPLHVGRHPLSGLTPWRQSCRGEPGCRLEGPPLLSTSRSTTTFP
SAGRGPFSRAPFSPETEKLTSWWSYQHCGCRRKSSPCRCSGSR
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mRNA from alignment at S-firma_F_contig10275:2..558-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10275.411.1 ID=mRNA_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=557bp|location=Sequence derived from alignment at S-firma_F_contig10275:2..558- (Sphaerotrichia firma ET2_F female)
GCAGGCGCTCACCCGCACGCTCCTTCGCAAAGCTCCAAAGGCAAGACCAA GAAGCCGCCGGCCCGACCTAGCAGCGAAAGAAGCAAGGGGAGTGCCCCTG GCCACGAGAAAGACACAGCAAGTGTTCGCGTTGGCGGTGGTGATGAAGCA CCGAGCCTCCGGAGGGAGACCCCGCTCCATGTGGGTAGGCATCCACTATC GGGATTGACGCCGTGGCGGCAGAGTTGTCGCGGCGAGCCAGGGTGCCGGC TCGAAGGGCCGCCGCTCCTCTCTACTTCGCGTTCGACCACTACTTTTCCG TCCGCGGGCAGGGGACCATTCTCACGGGCACCGTTCTCACCGGAGACGGA AAAGTGAGTGTCGGTAGGGGAGCGCTTTGTTTTTGGGACTGCTTCAGCTT GCGTTGGGTCAGATTTGTTGCAGTCGATTATCCCTGCTCGAACATTCTCG TCTGAATGAGCCCCGCCGCTGTCCGCTGCAGGTTAACCAGCTGGTGGAGT TACCAACACTGCGGCTGCAGAAGAAAGTCAAGTCCATGCAGATGTTCCGG AAGCCGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10275:2..558-

>mRNA_S-firma_F_contig10275.411.1 ID=mRNA_S-firma_F_contig10275.411.1|Name=mRNA_S-firma_F_contig10275.411.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=858bp|location=Sequence derived from alignment at S-firma_F_contig10275:2..558- (Sphaerotrichia firma ET2_F female)
GCAGGCGCTCACCCGCACGCTCCTTCGCAAAGCTCCAAAGGCAAGACCAA
GAAGCCGCCGGCCCGACCTAGCAGCGAAAGAAGCAAGGGGAGTGCCCCTG
GCCACGAGAAAGACACAGCAAGTGTTCGCGTTGGCGGTGGTGATGAAGCA
CCGAGCCTCCGGAGGGAGACCCCGCTCCATGTGGGTAGGCATCCACTATC
GGGATTGACGCCGTGGCGGCAGAGTTGTCGCGGCGAGCCAGGGTGCCGGC
TCGAAGGGCCGCCGCTCCTCTCTACTTCGCGTTCGACCACTACTTTTCCG
TCCGCGGGCAGGGGACCATTCTCACGGGCACCGTTCTCACCGGAGACGGA
AAAGCAGGCGCTCACCCGCACGCTCCTTCGCAAAGCTCCAAAGGCAAGAC
CAAGAAGCCGCCGGCCCGACCTAGCAGCGAAAGAAGCAAGGGGAGTGCCC
CTGGCCACGAGAAAGACACAGCAAGTGTTCGCGTTGGCGGTGGTGATGAA
GCACCGAGCCTCCGGAGGGAGACCCCGCTCCATGTGGGTAGGCATCCACT
ATCGGGATTGACGCCGTGGCGGCAGAGTTGTCGCGGCGAGCCAGGGTGCC
GGCTCGAAGGGCCGCCGCTCCTCTCTACTTCGCGTTCGACCACTACTTTT
CCGTCCGCGGGCAGGGGACCATTCTCACGGGCACCGTTCTCACCGGAGAC
GGAAAAGTTAACCAGCTGGTGGAGTTACCAACACTGCGGCTGCAGAAGAA
AGTCAAGTCCATGCAGATGTTCCGGAAGCCGGGTTAACCAGCTGGTGGAG
TTACCAACACTGCGGCTGCAGAAGAAAGTCAAGTCCATGCAGATGTTCCG
GAAGCCGG
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