mRNA_S-firma_F_contig10188.292.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10188.292.1
Unique NamemRNA_S-firma_F_contig10188.292.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10188.292.1 vs. uniprot
Match: A0A6H5JTZ9_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JTZ9_9PHAE)

HSP 1 Score: 53.1 bits (126), Expect = 7.640e-5
Identity = 56/139 (40.29%), Postives = 72/139 (51.80%), Query Frame = 1 
Query:   31 DGTGGGSGGTSLYSDQESGRGDLSTPSSKSSMSTGYESSAMGKPPSTAADSNRGDSAWERGSERQKSMGVGPAPAAADDSPSQDG--GAEDDGSYAYPPPSPSSSFSVPLAGGRKSDESMTQLERSALERKAYYEAHAA 441
            DG+GG S  TS+YSD+E   GDLS  SS+ S+STGYESSA GK                 GS+ ++     P     +D    DG  G  D  S  Y PPSP+     P  G +  D  +++LE SA+ +KAYYE  AA
Sbjct:  870 DGSGGSSACTSMYSDEEE-DGDLS--SSRFSISTGYESSARGK-----------------GSQPRQ-----PGTPTGEDQSQHDGDAGGRDRASDTYAPPSPAWPLQHPPVG-QTPDAVLSELEISAVTKKAYYEIQAA 982
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10188.292.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5JTZ9_9PHAE7.640e-540.29Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10188contigS-firma_F_contig10188:187..5353 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons5
Model size563
Cds size561
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10188.292.1prot_S-firma_F_contig10188.292.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10188 187..5351 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815546.472586-CDS-S-firma_F_contig10188:186..2771622815546.472586-CDS-S-firma_F_contig10188:186..277Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 187..277 +
1696949406.4487803-CDS-S-firma_F_contig10188:186..2771696949406.4487803-CDS-S-firma_F_contig10188:186..277Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 187..277 +
1622815546.4877462-CDS-S-firma_F_contig10188:549..7381622815546.4877462-CDS-S-firma_F_contig10188:549..738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 550..738 +
1696949406.4572194-CDS-S-firma_F_contig10188:549..7381696949406.4572194-CDS-S-firma_F_contig10188:549..738Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 550..738 +
1622815546.508721-CDS-S-firma_F_contig10188:2506..25981622815546.508721-CDS-S-firma_F_contig10188:2506..2598Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 2507..2598 +
1696949406.4650285-CDS-S-firma_F_contig10188:2506..25981696949406.4650285-CDS-S-firma_F_contig10188:2506..2598Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 2507..2598 +
1622815546.5277963-CDS-S-firma_F_contig10188:2985..31131622815546.5277963-CDS-S-firma_F_contig10188:2985..3113Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 2986..3113 +
1696949406.4781246-CDS-S-firma_F_contig10188:2985..31131696949406.4781246-CDS-S-firma_F_contig10188:2985..3113Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 2986..3113 +
1622815546.5465302-CDS-S-firma_F_contig10188:5290..53511622815546.5465302-CDS-S-firma_F_contig10188:5290..5351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 5291..5351 +
1696949406.4871628-CDS-S-firma_F_contig10188:5290..53511696949406.4871628-CDS-S-firma_F_contig10188:5290..5351Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10188 5291..5351 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10188.292.1

>prot_S-firma_F_contig10188.292.1 ID=prot_S-firma_F_contig10188.292.1|Name=mRNA_S-firma_F_contig10188.292.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=187bp
GDGSGGEVWSDGTGGGSGGTSLYSDQESGRGDLSTPSSKSSMSTGYESSA
MGKPPSTAADSNRGDSAWERGSERQKSMGVGPAPAAADDSPSQDGGAEDD
GSYAYPPPSPSSSFSVPLAGGRKSDESMTQLERSALERKAYYEAHAAPAA
AAVTETARTVATASAVRTPSNAGSELQPTSSVPSGST
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mRNA from alignment at S-firma_F_contig10188:187..5353+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10188.292.1 ID=mRNA_S-firma_F_contig10188.292.1|Name=mRNA_S-firma_F_contig10188.292.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=5167bp|location=Sequence derived from alignment at S-firma_F_contig10188:187..5353+ (Sphaerotrichia firma ET2_F female)
GGAGACGGCAGCGGGGGTGAGGTGTGGTCCGACGGGACCGGCGGCGGCAG
CGGCGGCACGTCGCTGTACTCCGACCAGGAGAGCGGACGCGGTAAGCAAG
CCGTGCTTGAGTCTAGTCTTCGCTAAGTTTGTGTCGTTTATCTCTTGTAC
AAAGAAGAAAATCAACACTACTGTAGAAGCGTCGTCGCGTGAGACAGGAG
CAAGAAGATAGTTTAACAAGTTGAGCGACAGTCTTGTCGCTCGCGTGGAT
CTGTCTGCGGTTAGTTGCCGGATGGCAAATGAAACAGTCTATTCGCAACG
AGAAACGACAACCTCAACCTAAAACCGAATCCACGACGCGTCGTTCTCGA
ACACGCCGCACAGGGGATCTCTCCACGCCGTCCTCGAAGTCTTCCATGTC
CACCGGGTACGAGTCTTCTGCGATGGGGAAGCCTCCTTCCACCGCCGCCG
ACAGCAACCGCGGCGATTCGGCGTGGGAACGGGGCTCCGAGCGCCAAAAG
AGCATGGGCGTGGGACCCGCGCCGGCGGCGGCAGATGATTCGCCATCGCA
AGGTGAGCCCCGCCCGCCCTCAGGGTCTCGTTGTCTTCCCTCCCGGGGAG
GACGTATATATAGTGACACACGGGCAGTCTACTACCAGGTAGTTTTTTAT
TTGCCCATCGGACAATTGCAGAATAAACGTCTTTCTCCGAACTTGTTCTA
CTGTTATCTTGCTCCTCCTGTCTGACATGACGATGCTACTGAAACGTGAA
CGTGTATCCACACGTACCATCTACCTACTACGTGGTAGATGTGATTTCTT
CCTCTCTTTTTTTTTGGCCTCCTTGTTCTTTTCTCATCTGTTTGCCGTCC
GACCATCTTCGTTGTTTGAAAAAAGAGAGATGATGTACAGTTAGTTGCAG
ACCCGGGCTCCAATAAAAAAAAAATGCCATCCGACAGAGTAAAGACCTAG
ACCCAGGCTCAATTAACACAAAAACATCAATCGTTTGTAAAGTGATGGTA
TCGTCAGCATCAATACGCAGTGAACGTCCAAGCGCTGTGTACCGGATCAA
TTCGGTGGCGAATCGCGAAACAAAGCTCGCCTGCGAATTCTGGAGGTAAT
ACTTTCCGAAGCTACAGTAGTTGCGCCATGAAAAAAATCCCCCCTGCCTT
TTTTATCGTATCCCCGCTTATGGTTGGTGTAGACCAGGGGTGGGCGGGAA
GGACAAGAAGAAGGAAAAAAAAAACAGAAAACACTTGTTGGAGTTCCCCC
CGCTGCTGCTGTACATTCGTTTTAATCCGAATACTTGCGGCCGTTGTTTT
TGGTGTGGTAAAGGTGTTCGATTTACATATGTGGCTTGGGTGTTGATTGA
GCGCGCAACCGGCGTAATACCTCGTTTTTTAATATATTTTCTACATTCTC
CGTTTTTTGCCCTGTGGTTCCAGTTGTTCAACGACGAATTGAATGGAATT
TTTTGCAGTGAGGATTCATGTTGAATGAAGGTTTGCTTGGATTTATGTGG
AATTGTCCGATGGCAAATGAAATAATAATAATAATTCATGTTGACGAAGG
TCCCGTAGTCCAAGGCGCACGAAGCGAGCGAGCACCGGTCGACCGAGTTC
CACACGAGATGAAACGAGTGTTGTCGACGTCAACGATGTTTCATCTACTC
CTGTTGGTCTCGTTATTATTGCGAAATGAACCGTTTCAACCCTTATTTCA
ACATTTCAACGGATGCACGAAGTCTTCAGCGGTGCGCGCGGACCGGGGTA
AACGTGTAATATAGAAACAATTTCGCTTCTTTGCGCCAAGCTCTGTCATC
ATGCTGTTGTTATACTAGTATATCCAAAAACTTAAGATCAAAGACACATT
TTCTCCTATGTTACACCTCATTCTGGAGCGAATGCAAGTATGACGACAGA
AGCCTCTCCAACAGCTTCACAGCTTCCGAGCTTTTTGCTTGTGGAACCAA
AGTTCATTCGACGCACCACACAACCTCCACGCTGCAACAAAAACCAGCAA
TCGGTTCATTCATTGTCATCGTTCTTGTTGCGGCAAAAGATAGGCACGAG
CACGCACAGCATGTTTGCTCGATCGCGTGGATTCGAGGGGGAAATGGCGG
TGGTACCACTTGTTACTACTCAGTATTTCATACTCCGGAGTATAGTATAC
CATCCGACGAATTGATGGCAGATGAACTTTCACTCAACTTGTTTACTATC
TTGCTCCTTCCTGTCTGACACGACGATGCTATCCATATGTGCTCATGTAC
ACGTTGTATAGTTGTTTCCGTTGGTGATTCTCCCACGCCCTACCCCCCAA
CCACGTGCTGCACATGGCAGATGGTGGCGCCGAAGACGATGGTTCCTACG
CCTACCCCCCACCGTCCCCGTCTAGTTCTTTTTCCGTGCCCCTTGCGGGT
GGGCGAAAGTCGGTGAGCGACGAGGACGAGTTAGGAGGTGGATGCAAGAA
GCACTCTGCGGTGGCTGTAACCGCCACCTATTTTAGAACGAGTCGAAAAG
CAGCGCAATACCGGGAAGAATACTGGCTTCATCATAGACACATGATACAA
GCATTACCACCATGACTGGTGACTCTGGTTGTTGCGTTTGAAGCATTGCT
AGAAATGTAGTGTATACCTATGTCCGTTGCTTCTACCCTATCGACGATTT
CATTGCTCGAGCTATGATTTCCTGAGCGACGGAGTGAGGGGCTGAGTGAC
TGAGTGAGTGCGGTTTGGTGAGCTTCAAGCAGGTTGCTACGTATATATGT
ACACGCATATCGCACCAACACATACATGTTCCGCGCCCCCGCGACGCAGG
ACGAGTCCATGACCCAGCTGGAGAGGTCAGCGCTCGAGCGGAAGGCGTAC
TACGAGGCGCATGCCGCACCTGCCGCCGCCGCCGTCACGGAAACCGCCCG
AACGGTCGCTACCGCCTCCGCAGTGAGGTGAGAGGCTAGCACAACGCACA
ACGTGATGATGTGGTGTAGGGTTGTGGGAGTTTCAGTTGGCGCGACCTTT
GCGGCCGCGTCGGGTTGGGTTGGGTTGGTCATAGTGCTGGGTTGTGTAGA
GTAGGGTTCGGTTGGCGTGGCCTTTTTGGCCGCGCTAGGTTGGGGTGGGT
TGGGTTTGTTGTAGTGTTTGTTGGGGGTTGTTGTAGTAGTGCTGGGGTTA
AACCCAATGGACTAGCTAGACCAGACATCCCGGTACAGTTTTCACCTTCT
TCCAAAGATACAACGCATGCACGCATGAATGCATGTACGCGTGCTGCGGT
GCAGTTCAGTACCGCCAAGAAGAAGCGGTGAGTGAGACGGAGCAAGGAGG
AGTAGAAGAGGAAGAATAAGAGTTTTTCTCTTGTCTTCTCAGCACCTGTT
GCAGGCGAGAGTATTTTTTTCTGACACCGCCCGCTGTTCGGTGAGAGGTT
AGCGCAAGAATGGGCCTTCCGCCGAAAAACCGTACCGGTGGCGCAGGCAG
GAGTGGCAGCTCAGACAACGCAATCATCACGGCCGCTTATTTTTCCCTTC
CCACAGGACGTACGTAAGCCGTAGACAGCCCTCCGACACACAAAGTGCAG
GCGGATTGTTCTTCAGCCAACCAACGCTTTCGTTCTCCCGAATGAATCTA
ATACTATTATTATTATTACTAATGTTATCATTTAAATTTAAATTTAAATC
CTAATGATCTCATTCCGAAAATGGGCCGGTTGAATTGGCGTTACGGTTTG
GTTCGCCCACCACAAGTTTCACCGCATTTGTTTCTCCGTGTGGGAGGGGA
CATTTGGTATTGTCCCCGGGAGGTGACAGAAAAAAAATCCCCGCGTCGTA
CAAGACATGGTATCTCCGAAAACAGGAAGATCTTCGGAGAAACCCGGGAA
CGCAAAATATTTTTCGTCCCCTCCCGGGGATGGTTGTACACATCCCCGTG
ACATCCCCGTGATATAACATATCATGCAGTGTAAACGTTTTGTTTTTCCT
CCTCACGTTTGTGAGTTCTGTCGTCTGCCCCACTGCCCCCCATCCTCCAC
TACGACTTGCTAGATGACCCACCCGGGGTCATACAGGAGGGGGCCTCCTA
CGGTACCTGCCTATGAAATTTGTATCGCGAGCAGAGTAGAGCACTCCCCA
CCCTCGTCTCAACAATGAAGTTCAAGTATTTACTAACGCAAGCGTTTTCA
ATTTTCAGGAACATGTATGTGAAAAATAAATGTGAAAAACAAACGTATGA
AAGTATATCAGCATGGGAATACCTCGAAAAACCAAAAACGGCGCTGCTAC
CCCCGTGAGAGACGCTCGCCGCACAGCGCTGAAAACGTGGGTTCAAACCT
CGGTCGTCGCCATATCAAAAAAGGCGGCAAAAAAACGGTTTCAACGCCAC
CCGCGAGGCATTCCCAATTTCCAGACGTGGATGGCGTTGTGCAGAGCGCG
ATTGATTCAAACCACAACCACCCTATTAGTTTTTATTTGCCATCCGACAA
CTGCAGACGTATCCAACAACATATTTTCTTCTTCCACCCCAAAGCCACCC
TGCCCGCCGTGATCACTGCGAGTATTGTCATGTAGGACGCAGACATTTCG
TACCATCCCATGTGGCAAAAGGGTCGTACGTAAAGGTATGTTGTGCCTTA
CCATGGAGTACACATGACGAGAAGAGGGCGAAAGTTTAGACGGCCTTTGC
TGCATCTATCTACTTGTATCTGCAACTTTCATACATGTGATACATCAAAC
GAAGCAACCAAACCATTACTACATCGTTTACCATCCGACAATATATACAT
TTCTATGGCAGATCGTTCTACCACGTGCTCGATCCAAATGCTTGATCCAA
AACTAAAGGTAATTAATTGCAATATACTGACCTGACAAGCAAGATCAAGA
TAATCGACGCAACCCACCAATAAATACCCCCAATAATCTCCAAATTGCTT
TGCGTTGGACATGTCCCTCCCTATTCGTACTTAGCAAGGACCTTGTGTTC
CAATCCTCACGTTCTTAAAGCAATGACGTGTTTTGTTCATCTAGGAGTTT
CGCATCGTCCTGTTGAAAGAAAGTTTTGTTGGGTTCATCTGCAATTGTCG
GACGGAGAAATAAAGAAATGATCACTTTTTTTTTTTCTTTGTTCTTCCGT
CCAGAACCCCCAGCAACGCCGGTTCCGAGCTGCAGCCGACGTCGAGCGTA
CCCAGCGGAAGCACGGG
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Coding sequence (CDS) from alignment at S-firma_F_contig10188:187..5353+

>mRNA_S-firma_F_contig10188.292.1 ID=mRNA_S-firma_F_contig10188.292.1|Name=mRNA_S-firma_F_contig10188.292.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1122bp|location=Sequence derived from alignment at S-firma_F_contig10188:187..5353+ (Sphaerotrichia firma ET2_F female)
GGAGACGGCAGCGGGGGTGAGGTGTGGTCCGACGGGACCGGCGGCGGCAG
CGGCGGCACGTCGCTGTACTCCGACCAGGAGAGCGGACGCGGGAGACGGC
AGCGGGGGTGAGGTGTGGTCCGACGGGACCGGCGGCGGCAGCGGCGGCAC
GTCGCTGTACTCCGACCAGGAGAGCGGACGCGGGGATCTCTCCACGCCGT
CCTCGAAGTCTTCCATGTCCACCGGGTACGAGTCTTCTGCGATGGGGAAG
CCTCCTTCCACCGCCGCCGACAGCAACCGCGGCGATTCGGCGTGGGAACG
GGGCTCCGAGCGCCAAAAGAGCATGGGCGTGGGACCCGCGCCGGCGGCGG
CAGATGATTCGCCATCGCAAGGGGATCTCTCCACGCCGTCCTCGAAGTCT
TCCATGTCCACCGGGTACGAGTCTTCTGCGATGGGGAAGCCTCCTTCCAC
CGCCGCCGACAGCAACCGCGGCGATTCGGCGTGGGAACGGGGCTCCGAGC
GCCAAAAGAGCATGGGCGTGGGACCCGCGCCGGCGGCGGCAGATGATTCG
CCATCGCAAGATGGTGGCGCCGAAGACGATGGTTCCTACGCCTACCCCCC
ACCGTCCCCGTCTAGTTCTTTTTCCGTGCCCCTTGCGGGTGGGCGAAAGT
CGATGGTGGCGCCGAAGACGATGGTTCCTACGCCTACCCCCCACCGTCCC
CGTCTAGTTCTTTTTCCGTGCCCCTTGCGGGTGGGCGAAAGTCGGACGAG
TCCATGACCCAGCTGGAGAGGTCAGCGCTCGAGCGGAAGGCGTACTACGA
GGCGCATGCCGCACCTGCCGCCGCCGCCGTCACGGAAACCGCCCGAACGG
TCGCTACCGCCTCCGCAGTGAGGACGAGTCCATGACCCAGCTGGAGAGGT
CAGCGCTCGAGCGGAAGGCGTACTACGAGGCGCATGCCGCACCTGCCGCC
GCCGCCGTCACGGAAACCGCCCGAACGGTCGCTACCGCCTCCGCAGTGAG
AACCCCCAGCAACGCCGGTTCCGAGCTGCAGCCGACGTCGAGCGTACCCA
GCGGAAGCACGAACCCCCAGCAACGCCGGTTCCGAGCTGCAGCCGACGTC
GAGCGTACCCAGCGGAAGCACG
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