mRNA_S-firma_F_contig10158.267.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10158.267.1
Unique NamemRNA_S-firma_F_contig10158.267.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10158.267.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10158contigS-firma_F_contig10158:4619..4951 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size334
Cds size333
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815544.2135532-CDS-S-firma_F_contig10158:4618..49511622815544.2135532-CDS-S-firma_F_contig10158:4618..4951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10158 4619..4951 +
1696949404.6991327-CDS-S-firma_F_contig10158:4618..49511696949404.6991327-CDS-S-firma_F_contig10158:4618..4951Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10158 4619..4951 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10158.267.1prot_S-firma_F_contig10158.267.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10158 4619..4951 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10158.267.1

>prot_S-firma_F_contig10158.267.1 ID=prot_S-firma_F_contig10158.267.1|Name=mRNA_S-firma_F_contig10158.267.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=111bp
SSPRRAARGGGRRCGGGGGPCRAAGRRSGGAGGTGRRAHTSSTSSSSRSS
RSRSPTGRGRRARSHRRRPPPGSRSRSRSRSGTSGGRRRRPGSRGNGAAG
PHAPRRASGFL
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mRNA from alignment at S-firma_F_contig10158:4619..4951+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10158.267.1 ID=mRNA_S-firma_F_contig10158.267.1|Name=mRNA_S-firma_F_contig10158.267.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=333bp|location=Sequence derived from alignment at S-firma_F_contig10158:4619..4951+ (Sphaerotrichia firma ET2_F female)
AGCAGCCCGCGCAGAGCGGCGCGGGGGGGTGGCCGGAGATGCGGCGGCGG
CGGTGGACCGTGCAGAGCGGCGGGTCGCAGAAGCGGCGGGGCGGGAGGCA
CGGGCCGGCGAGCCCACACCAGCAGCACCAGCAGTAGCAGCAGGAGTAGC
CGCAGCAGGAGCCCTACCGGCCGAGGGAGACGTGCCCGGAGCCACCGCCG
GCGTCCCCCCCCCGGCAGCAGGAGCAGGAGCAGGAGCAGGAGCGGCACCA
GCGGCGGCCGCAGGAGACGCCCCGGCAGCCGGGGTAACGGCGCCGCCGGC
CCCCACGCCCCCCGCAGAGCCTCCGGCTTCCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10158:4619..4951+

>mRNA_S-firma_F_contig10158.267.1 ID=mRNA_S-firma_F_contig10158.267.1|Name=mRNA_S-firma_F_contig10158.267.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=666bp|location=Sequence derived from alignment at S-firma_F_contig10158:4619..4951+ (Sphaerotrichia firma ET2_F female)
AGCAGCCCGCGCAGAGCGGCGCGGGGGGGTGGCCGGAGATGCGGCGGCGG
CGGTGGACCGTGCAGAGCGGCGGGTCGCAGAAGCGGCGGGGCGGGAGGCA
CGGGCCGGCGAGCCCACACCAGCAGCACCAGCAGTAGCAGCAGGAGTAGC
CGCAGCAGGAGCCCTACCGGCCGAGGGAGACGTGCCCGGAGCCACCGCCG
GCGTCCCCCCCCCGGCAGCAGGAGCAGGAGCAGGAGCAGGAGCGGCACCA
GCGGCGGCCGCAGGAGACGCCCCGGCAGCCGGGGTAACGGCGCCGCCGGC
CCCCACGCCCCCCGCAGAGCCTCCGGCTTCCTGAGCAGCCCGCGCAGAGC
GGCGCGGGGGGGTGGCCGGAGATGCGGCGGCGGCGGTGGACCGTGCAGAG
CGGCGGGTCGCAGAAGCGGCGGGGCGGGAGGCACGGGCCGGCGAGCCCAC
ACCAGCAGCACCAGCAGTAGCAGCAGGAGTAGCCGCAGCAGGAGCCCTAC
CGGCCGAGGGAGACGTGCCCGGAGCCACCGCCGGCGTCCCCCCCCCGGCA
GCAGGAGCAGGAGCAGGAGCAGGAGCGGCACCAGCGGCGGCCGCAGGAGA
CGCCCCGGCAGCCGGGGTAACGGCGCCGCCGGCCCCCACGCCCCCCGCAG
AGCCTCCGGCTTCCTG
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