mRNA_S-firma_F_contig10155.262.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10155.262.1
Unique NamemRNA_S-firma_F_contig10155.262.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: A0A6H5JX21_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JX21_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 4.140e-50
Identity = 88/157 (56.05%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:    1 LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNGNIVECE 471
            +++  RQ R DKRVSGG  KLHRCTGAVI    K  +GCPVL RACK     W+VT V LDH ACTGQ+G  ++R +R+ V  E  ALV+ N  I+  AL+KTLKAT G D  ERTA RMR D+LGK K  IA++YQ L SY + L   NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: D7FZQ7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZQ7_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 2.510e-49
Identity = 85/157 (54.14%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:    1 LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNGNIVECE 471
            ++++ RQ R DKRVSGG  KLHRCTGA+I    K  +GCPV  R CKQ    W+VT V LDH ACTGQ+G  ++R +R+ V  E  ALV+ NH I+  +L KTLKAT G D  ER+A+RMR D+LGK K  IA++YQ L S  + L   NGNIVEC+
Sbjct:    1 MISQSRQCRLDKRVSGGRGKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEGEAAALVSANHSITCPSLVKTLKATSGVDVSERSASRMRADILGKGKDAIAKEYQLLQSSCDLLGRDNGNIVECQ 155
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BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: A0A6H5L4I0_9PHAE (SWIM-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4I0_9PHAE)

HSP 1 Score: 169 bits (427), Expect = 2.470e-46
Identity = 88/157 (56.05%), Postives = 107/157 (68.15%), Query Frame = 1 
Query:    1 LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNGNIVECE 471
            +++  RQ R DKRVSGG  KLHRCTGAVI    K  +GCPVL RACK     W+VT V LDH ACTGQ+G  ++R +R+ V  E  ALV+ N  I+  AL+KTLKAT G D  ERTA RMR D+LGK K  IA++YQ L SY + L   NGN+VEC+
Sbjct:   47 MISTSRQCRLDKRVSGGRGKLHRCTGAVING--KATSGCPVLARACKLHDGTWKVTEVVLDHVACTGQAGNKKQRINRRCVEEEAAALVSSNRSITCPALAKTLKATSGVDISERTAGRMRADILGKGKDTIAKEYQLLQSYCDLLGRDNGNVVECK 201
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BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: A0A6H5KQC0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KQC0_9PHAE)

HSP 1 Score: 158 bits (399), Expect = 6.730e-45
Identity = 81/156 (51.92%), Postives = 103/156 (66.03%), Query Frame = 1 
Query:    1 LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNGNIVEC 468
            ++++ RQ R DKR SGG +KLHRCTGA+I    K  +GCPV  R CKQ    W+VT   LDH ACTGQ+G  ++  +R+ V  +  ALV+ NH I+  +L KTLKAT G D  ERTA RMR D+LGK    IA++YQ L +Y + L   NGNIVEC
Sbjct:    1 MISQSRQCRLDKRDSGGRSKLHRCTGAIING--KATSGCPVRARGCKQTDGTWKVTEAVLDHVACTGQAGNKKQGINRRCVEKQAAALVSANHSITCPSLVKTLKATSGVDISERTAGRMRVDILGKGNDAIAKEYQLLQNYCDLLGRDNGNIVEC 154
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BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: A0A6H5J5Y0_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5J5Y0_9PHAE)

HSP 1 Score: 154 bits (390), Expect = 1.660e-43
Identity = 80/151 (52.98%), Postives = 101/151 (66.89%), Query Frame = 1 
Query:    1 LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNG 453
            ++A+ RQ R DKR+ GG  KLHRCTGA++    K  +GCPVL R CKQ    W+VT V LDH ACTGQ+   ++R +R+ V  E  ALV+ NH I+  +L KTLKAT G D  ERTA+RMR D+LGK K  IA++YQ L SY + L   NG
Sbjct:  155 MIAQSRQCRLDKRIIGGRGKLHRCTGAIVNG--KATSGCPVLARGCKQTDGTWKVTEVVLDHVACTGQASNKKQRINRRCVEREAAALVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYCDLLGRDNG 303
[Close]
BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Match: A0A6H5L768_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L768_9PHAE)

HSP 1 Score: 129 bits (323), Expect = 2.160e-33
Identity = 70/139 (50.36%), Postives = 88/139 (63.31%), Query Frame = 1 
Query:   55 AKLHRCTGAVIVDKVKGATGCPVLIRACKQKTKEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAALSKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTNGNIVECE 471
            A  H CTGA++    K  +GCPV  R CKQ    W+V  V LDH A TGQ+G  ++R +R+ V  E   LV+ NH I+  +L KTLKAT G D  ERTA+RMR D+LGK K  IA++YQ L SY + L   N NIVEC+
Sbjct:   16 AARHYCTGAIVNG--KATSGCPVRARGCKQTDGTWKVMDVVLDHVARTGQAGNKKQRINRRCVEGEATGLVSANHRITCPSLVKTLKATSGVDVSERTASRMRADILGKGKDAIAKEYQLLQSYGDLLGRDNRNIVECK 152
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10155.262.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A6H5JX21_9PHAE4.140e-5056.05Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FZQ7_ECTSI2.510e-4954.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L4I0_9PHAE2.470e-4656.05SWIM-type domain-containing protein n=1 Tax=Ectoca... [more]
A0A6H5KQC0_9PHAE6.730e-4551.92Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5J5Y0_9PHAE1.660e-4352.98Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
A0A6H5L768_9PHAE2.160e-3350.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10155contigS-firma_F_contig10155:534..1004 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog65071.PYU1_T002286
Max annot lvl121069|Pythiales
Evalue4.6e-07
EggNOG OGs2D5T0@1|root,2SZJ1@2759|Eukaryota,1MHKI@121069|Pythiales
DescriptionSource PGD
COG categoryS
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-13_000020.1
Exons1
Model size471
Cds size471
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815543.9148965-CDS-S-firma_F_contig10155:533..10041622815543.9148965-CDS-S-firma_F_contig10155:533..1004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10155 534..1004 +
1696949404.6032505-CDS-S-firma_F_contig10155:533..10041696949404.6032505-CDS-S-firma_F_contig10155:533..1004Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10155 534..1004 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10155.262.1prot_S-firma_F_contig10155.262.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10155 534..1004 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10155.262.1

>prot_S-firma_F_contig10155.262.1 ID=prot_S-firma_F_contig10155.262.1|Name=mRNA_S-firma_F_contig10155.262.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=157bp
LLAEGRQSRADKRVSGGSAKLHRCTGAVIVDKVKGATGCPVLIRACKQKT
KEWRVTAVCLDHTACTGQSGATQRRPSRKVVAAEYGALVNGNHDISSAAL
SKTLKATGGGDFPERTANRMRHDVLGKSKKQIAEQYQYLHSYLESLKGTN
GNIVECE
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mRNA from alignment at S-firma_F_contig10155:534..1004+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10155.262.1 ID=mRNA_S-firma_F_contig10155.262.1|Name=mRNA_S-firma_F_contig10155.262.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=471bp|location=Sequence derived from alignment at S-firma_F_contig10155:534..1004+ (Sphaerotrichia firma ET2_F female)
CTCCTCGCCGAGGGAAGGCAGTCCCGCGCCGACAAGAGAGTGTCTGGAGG
GAGCGCGAAGCTGCATCGTTGCACCGGAGCGGTCATCGTCGACAAAGTCA
AGGGGGCAACGGGCTGCCCAGTGCTGATTCGCGCGTGCAAGCAAAAGACG
AAGGAATGGCGTGTGACCGCGGTCTGCCTGGATCACACAGCGTGCACCGG
GCAGTCAGGGGCCACACAAAGGCGCCCGTCCCGCAAGGTGGTGGCTGCCG
AGTATGGTGCGCTGGTCAACGGCAACCACGACATCTCATCGGCAGCGCTC
TCGAAGACACTGAAGGCAACGGGCGGTGGAGACTTCCCAGAGCGCACGGC
GAACCGCATGCGCCATGACGTTCTCGGGAAAAGCAAGAAGCAGATCGCAG
AACAGTACCAATACCTGCACAGCTACCTCGAATCACTCAAGGGAACCAAC
GGCAACATCGTCGAGTGTGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10155:534..1004+

>mRNA_S-firma_F_contig10155.262.1 ID=mRNA_S-firma_F_contig10155.262.1|Name=mRNA_S-firma_F_contig10155.262.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=942bp|location=Sequence derived from alignment at S-firma_F_contig10155:534..1004+ (Sphaerotrichia firma ET2_F female)
CTCCTCGCCGAGGGAAGGCAGTCCCGCGCCGACAAGAGAGTGTCTGGAGG
GAGCGCGAAGCTGCATCGTTGCACCGGAGCGGTCATCGTCGACAAAGTCA
AGGGGGCAACGGGCTGCCCAGTGCTGATTCGCGCGTGCAAGCAAAAGACG
AAGGAATGGCGTGTGACCGCGGTCTGCCTGGATCACACAGCGTGCACCGG
GCAGTCAGGGGCCACACAAAGGCGCCCGTCCCGCAAGGTGGTGGCTGCCG
AGTATGGTGCGCTGGTCAACGGCAACCACGACATCTCATCGGCAGCGCTC
TCGAAGACACTGAAGGCAACGGGCGGTGGAGACTTCCCAGAGCGCACGGC
GAACCGCATGCGCCATGACGTTCTCGGGAAAAGCAAGAAGCAGATCGCAG
AACAGTACCAATACCTGCACAGCTACCTCGAATCACTCAAGGGAACCAAC
GGCAACATCGTCGAGTGTGAGCTCCTCGCCGAGGGAAGGCAGTCCCGCGC
CGACAAGAGAGTGTCTGGAGGGAGCGCGAAGCTGCATCGTTGCACCGGAG
CGGTCATCGTCGACAAAGTCAAGGGGGCAACGGGCTGCCCAGTGCTGATT
CGCGCGTGCAAGCAAAAGACGAAGGAATGGCGTGTGACCGCGGTCTGCCT
GGATCACACAGCGTGCACCGGGCAGTCAGGGGCCACACAAAGGCGCCCGT
CCCGCAAGGTGGTGGCTGCCGAGTATGGTGCGCTGGTCAACGGCAACCAC
GACATCTCATCGGCAGCGCTCTCGAAGACACTGAAGGCAACGGGCGGTGG
AGACTTCCCAGAGCGCACGGCGAACCGCATGCGCCATGACGTTCTCGGGA
AAAGCAAGAAGCAGATCGCAGAACAGTACCAATACCTGCACAGCTACCTC
GAATCACTCAAGGGAACCAACGGCAACATCGTCGAGTGTGAG
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