mRNA_S-firma_F_contig10116.212.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10116.212.1
Unique NamemRNA_S-firma_F_contig10116.212.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5K8N9_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K8N9_9PHAE)

HSP 1 Score: 363 bits (933), Expect = 1.360e-113
Identity = 181/308 (58.77%), Postives = 226/308 (73.38%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSA---ALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
            ++VSDF+  G++  AYF LFPHG+ G L KR   L LK+WAQILLRR D RFR+ RTFL+CVCALIFR+EAI+NARWKL GR+   VA+ +A      ++++  RA   E+   S+   ALA    +  L+K M  VH+G SW+I+NKR  R+ A S  +Q G P  W T+NP   NSPIV+ LAGV++D+ SRL+A FP+Y ++LR +A DPVASADFFH  IDAVLT LLRFGA DGDGGVL RVK Y GM EEQKRL LHCHLLVW++G+NDFASFR LMD+TP RY E+  ++D +IFNQIATL
Sbjct:  408 QMVSDFHNPGLFVGAYFDLFPHGVGGHLDKRTRPLDLKRWAQILLRRRDARFRKSRTFLYCVCALIFRREAISNARWKLRGRVPRDVASRIA-----GVTAQDLRAVAAEMETGSSGFSALADRPGIRDLIKNMEFVHAGASWTIYNKRSTRMIAISFIMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATL 710          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5L0L4_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L0L4_9PHAE)

HSP 1 Score: 368 bits (945), Expect = 2.140e-113
Identity = 183/308 (59.42%), Postives = 228/308 (74.03%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSA---ALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
            ++VSDF+  G++  AYF LFPHG+ G L KR   L LK+WAQILLRR D RFR+ RTFL+CVCALIFR+EAI+NARWKL GR+   VA+ +AR     ++++  RA   E+   S+   ALA    +  L+K M SVH+G SW+I+NKR  R+ A S  +Q G P  W T+NP   NSPIV+ LAGV++D+ SRL+A FP+Y ++LR +A DPVASADFFH  IDAVLT LLRFGA DGDGGVL RVK Y GM EEQKRL LHCHLLVW++G+NDFASFR LMD+TP RY E+  ++D +IFNQIATL
Sbjct:  488 QMVSDFHNPGLFVGAYFDLFPHGVGGHLDKRTRPLDLKRWAQILLRRRDARFRKSRTFLYCVCALIFRREAISNARWKLRGRVPRDVASRIAR-----VTAQDLRAVAAEMETGSSGFSALADRPGIRDLIKNMESVHAGASWTIYNKRSTRMIAISFIMQMGQPLFWLTINPADVNSPIVMVLAGVELDVTSRLKADFPAYADKLRFVANDPVASADFFHATIDAVLTCLLRFGACDGDGGVLGRVKGYVGMTEEQKRLTLHCHLLVWVYGYNDFASFRELMDKTPTRYFELAEYLDKVIFNQIATL 790          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5KIB1_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KIB1_9PHAE)

HSP 1 Score: 355 bits (911), Expect = 3.820e-108
Identity = 176/305 (57.70%), Postives = 227/305 (74.43%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
            +LVSDF E G++ AA++ LFPHG+ G L KR+  L  K+WA+ILL+R DPRFR+ RTFLFCVCALIFR+EAI NAR+KL G I++++A+ LA+     +S   + A  ME     ++L  +  + +L++ M SV SG SW+IHNKR  R+ A S  IQ G P IW T++P   NSPIV+KLAGVD+D+ S+L++ FP Y E+LR++A DPVASA F+H  I  VLT LLRFGA DGDGGVL RVK Y GM EEQKRL LH HLLVW++G+NDF SFR LMD+TP RY E+ R++D+I+FNQIATL
Sbjct:  556 KLVSDFSEPGLFIAAFYDLFPHGVGGPLDKRRRSLTFKRWARILLKRRDPRFRKHRTFLFCVCALIFRREAIENARFKLRGNISTRIASLLAKVTPADLS---QAAAEMEGSFDFSSL--NEGIRSLIRMMESVSSGASWTIHNKRCTRMIAISYMIQMGQPLIWLTISPADHNSPIVMKLAGVDIDVTSKLKSDFPDYTEKLRLVASDPVASAQFYHNTIQGVLTCLLRFGASDGDGGVLGRVKGYVGMTEEQKRLMLHAHLLVWIYGYNDFVSFRALMDKTPRRYTELARYLDNIVFNQIATL 855          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5KTA2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KTA2_9PHAE)

HSP 1 Score: 297 bits (761), Expect = 5.260e-88
Identity = 156/305 (51.15%), Postives = 203/305 (66.56%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSA-ALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIAT 912
            ++V DF E G+  AAYF LFPHG+ G L KR+  L   +WA+ LLRR DPRFR++RTF+FC+ A+IFR+EAI+NA WKLTGR++  VA  L       + +  R    +E    +A ALA       L++TM SV+   SW++ NKR +R+ A SM IQ G P  W T+NP   NSP+V+KLAGVD+D++SRL+   P Y +RL++IA DPVASA+FFH MIDAV+ TLLRFGA+DGDGGVL RVKAY GM EEQ+RL LHCHLLVW+                   Y E+  F+   IF+Q+A+
Sbjct: 2615 KMVEDFNEPGVMIAAYFDLFPHGVGGHLDKRQRPLNFTKWARCLLRRRDPRFRKNRTFVFCLAAIIFRREAISNAHWKLTGRVSRGVAQELDGITPDDLLAVARE---IEGGTSTAKALANRPAARQLIRTMQSVNGDASWTMFNKRTLRMKAISMIIQLGQPLFWMTINPADSNSPVVMKLAGVDLDVSSRLKTDLPQYVKRLQLIAADPVASAEFFHVMIDAVMKTLLRFGAKDGDGGVLGRVKAYVGMTEEQRRLTLHCHLLVWV-------------------YQELASFLSRTIFSQVAS 2897          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5K882_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K882_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 2.950e-85
Identity = 152/300 (50.67%), Postives = 205/300 (68.33%), Query Frame = 1
Query:   16 FYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMEL-PRVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIAT 912
            FY+EG++ AA+F LFPHG+ G L +R+  +  ++WA+ILLR+ DPRFR+ ++FLFCV ALIFR+EAI NARWKLTGR++ + A +LA T+ P+  +    A  ME    V +ALA  + V TLL TM SVH+G SW+I+NKR  R+ A S+ +Q G P  W T+ P    SPI                        RLR++A DPVASA  +H + DAVLT LLRF A+DGDGGVL RVK Y GM +EQ+RL LH H+LVW++GFNDF+SFR+LMD+ PE+Y ++ RF++ +IFNQ+ +
Sbjct:  230 FYDEGLFVAAFFDLFPHGIGGHLDERRRYMSFQEWAKILLRQRDPRFRKHKSFLFCVWALIFRREAIKNARWKLTGRMSRRTAETLA-TITPEDLA--AAAKEMEQGSSVWSALANRNAVRTLLTTMESVHAGSSWTIYNKRSTRMIAISLIMQIGQPLWWMTIGPADTKSPI------------------------RLRLVASDPVASALLYHSVTDAVLTCLLRFDARDGDGGVLERVKGYLGMTKEQRRLMLHFHVLVWVYGFNDFSSFRDLMDKRPEKYNKLARFLERVIFNQVVS 502          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5JN07_9PHAE (ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JN07_9PHAE)

HSP 1 Score: 282 bits (721), Expect = 1.160e-82
Identity = 145/305 (47.54%), Postives = 193/305 (63.28%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
             +VSDFY+EG++  AYF+LF HG+ G L  R+  +  K+WAQI LRR D RF +D+TF FCVCAL FR+EA  NARWK+ G + S  A +LA ++ P+           ++P  +  L   +                            +  S  +Q G P  W T +P   NSPIVL+LAGV +D+ SRL++ FP Y ERLR++A D V SA F+H +  AVLT  LRFGA DGDGGVL RVKA  GM EEQ+RL LHCHLLVW++G+NDF+ FR LMD++PE+Y ++ RF++ +IFNQ+ATL
Sbjct:  534 NMVSDFYDEGLFVVAYFNLFSHGIGGHLDVRRRPVSCKEWAQIFLRRRDGRFSKDKTFWFCVCALTFRREATNNARWKIKGGMPSDAAETLA-SISPE-----------DIPAAAKELEQGTG---------------------------SCDSFIMQMGQPLWWMTFSPADTNSPIVLQLAGVTIDVTSRLKSDFPDYVERLRLVACDHVTSAFFYHSVTKAVLTCWLRFGATDGDGGVLGRVKACVGMTEEQRRLMLHCHLLVWVYGYNDFSIFRELMDKSPEKYNKLARFLEQVIFNQVATL 799          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: D7G3U9_ECTSI (ATP-dependent DNA helicase n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3U9_ECTSI)

HSP 1 Score: 276 bits (705), Expect = 1.620e-80
Identity = 135/237 (56.96%), Postives = 174/237 (73.42%), Query Frame = 1
Query:  208 EAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELPRVSAALAGD-SDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
            EAI NARWKLTGRI+   + +L+      ++     A  ME  R + ++  D + +A L+KTM SVH+G SW+ HNKR  R+ A S  +Q G P IW T+NP   NSPIV+K+ GVD+D++S+L+A FP Y ++LR++A DPVASADFFH  ID VL+ LLRFGA DGDGG+L RVK Y GM EEQKRL LHCHLLVW+ G+NDFASFR+LMD TP RY E+ +++D+IIFNQ+ATL
Sbjct:  558 EAIENARWKLTGRISPADSRTLSAVTPEDLAD---AAAAMENGRGNGSVLSDRAGIAALIKTMESVHAGASWTPHNKRSTRMIAISYIMQMGQPLIWMTINPADVNSPIVVKMCGVDIDVSSKLKANFPDYVDKLRLVANDPVASADFFHNTIDGVLSCLLRFGASDGDGGILGRVKGYVGMTEEQKRLVLHCHLLVWVFGYNDFASFRDLMDRTPARYTELAQYLDNIIFNQVATL 791          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5K657_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K657_9PHAE)

HSP 1 Score: 221 bits (564), Expect = 5.270e-65
Identity = 125/297 (42.09%), Postives = 165/297 (55.56%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQ--LAKRKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELP---RVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVR 876
             ++ D      W     H FP G CG      RK  +   +W QILL R D  +R DR FLFCV A+ FR EA+AN R+KL+ +  S  A ++A      I+     A   EL    + SA L    ++ +LL+TM +V    +W+ H K   R TA SM I FG P  W TVNP   NSP V+   G D++++S      P + +RL II  DPVASA FFHE I+AVL  +LRF A DGDGG L  +KAY GM EEQ RL LH HL+VW+HGF      R  +  + +++AE+ +
Sbjct:  222 EILDDCNNNSAWVEGVMHAFPEG-CGSPLCPTRKRLVSFNRWIQILLNRRDSSWRIDRCFLFCVAAIRFRHEALANVRFKLSVQPNSANADAIA-----SITKEHLHAMAEELKSGKKTSAVLNNRPEIRSLLRTMQAVSGDATWTDHGKHRARTTAHSMFILFGQPFFWMTVNPSDLNSPFVMHYGGHDINLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHETIEAVLKYILRFQANDGDGGPLGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQDVGYSLKKHAELAK 512          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5K1H7_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1H7_9PHAE)

HSP 1 Score: 214 bits (545), Expect = 2.530e-59
Identity = 117/269 (43.49%), Postives = 159/269 (59.11%), Query Frame = 1
Query:  118 WAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELP---RVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFNQIATL 915
            W QILL R D  +R DR FLFC  A+ FR EAIAN R+KL+ +  S  A ++A      I+     A   EL    + SAA     ++ +LL+TM +V    +W+ H K   R TA SM++ FG P  W TVNP   NSP V+   G D+D++S      P + +RL II  DPVASA FFH  I+AVL  +LRF A  GDGG L  +KAY GM EEQ RL LH HL+VW+HGF      R  +  + +++AE+ +++  II+NQ+ ++
Sbjct:  306 WIQILLNRRDSSWRIDRCFLFCAAAIRFRHEAIANMRFKLSVQPNSANADAIA-----SITKEHLHAMAEELKSGKKTSAAFNNRPEIRSLLRTMQAVSGDATWTDHGKHRARTTAHSMSMLFGQPFFWMTVNPSDLNSPFVMHYGGHDIDLSSTCHEQMPDFRKRLDIIVNDPVASAIFFHGTIEAVLKYILRFQANYGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTSREQLRQGVGYSLKKHAELAKYIGRIIYNQVMSV 569          
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Match: A0A6H5K355_9PHAE (Helitron_like_N domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K355_9PHAE)

HSP 1 Score: 198 bits (503), Expect = 6.430e-55
Identity = 119/315 (37.78%), Postives = 164/315 (52.06%), Query Frame = 1
Query:    1 RLVSDFYEEGIWPAAYFHLFPHGLCGQLAK-RKTKLGLKQWAQILLRRLDPRFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKISSRWRRAWRMELP---RVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRLTASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYPERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGMVEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVR------FVDSIIFNQIATL 915
             ++ D      W   + H FP G  G L   R+  +   +W QILL R D  +R DR FL C  A+ FR EAI+N R+KL+ R  S  A ++A      I+         EL    R SA      ++  L +   +V    +W+ H K  V  TA SM IQFGLP  W T NP   NSP V++                  Y +RL I   DPVASA FFHE ++AV+  +LRFGA+DGDGG L  +KAY GM EEQ RL LH HL+VW+HGF      R+ +  + +++A++ R      ++  +I+NQ+ +L
Sbjct:  175 EILDDSNNNSAWVEGFMHAFPGGCGGPLCPTRRNPVSFNRWIQILLNRGDIAWRVDRCFLCCAAAIRFRHEAISNVRFKLSVRPNSTDANAIA-----SITKEDLHGMADELKSGKRTSALKNNRPEIRALFRKTQAVSGDATWTDHGKHRVLATAHSMFIQFGLPFFWMTANPSDVNSPCVMQCG---------------EYRKRLDITVNDPVASATFFHETMEAVVKYILRFGAKDGDGGALGNIKAYIGMTEEQHRLMLHGHLMVWVHGFTS-RELRDDIGRSLKKHAKLARVQEVLYYIGRLIYNQVMSL 468          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10116.212.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5K8N9_9PHAE1.360e-11358.77Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5L0L4_9PHAE2.140e-11359.42Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5KIB1_9PHAE3.820e-10857.70ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5KTA2_9PHAE5.260e-8851.15Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K882_9PHAE2.950e-8550.67ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
A0A6H5JN07_9PHAE1.160e-8247.54ATP-dependent DNA helicase n=1 Tax=Ectocarpus sp. ... [more]
D7G3U9_ECTSI1.620e-8056.96ATP-dependent DNA helicase n=2 Tax=Ectocarpus sili... [more]
A0A6H5K657_9PHAE5.270e-6542.09Helitron_like_N domain-containing protein n=1 Tax=... [more]
A0A6H5K1H7_9PHAE2.530e-5943.49Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K355_9PHAE6.430e-5537.78Helitron_like_N domain-containing protein n=1 Tax=... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10116contigS-firma_F_contig10116:3385..4299 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FSK0
PFAMsHelitron_like_N,PIF1
Max annot lvl2759|Eukaryota
KEGG koko:K15255,ko:K20647
Evalue2.49e-109
EggNOG OGsCOG0507@1|root,KOG0987@2759|Eukaryota
EC3.6.4.12
DescriptionG-quadruplex DNA unwinding
COG categoryL
BRITEko00000,ko01000,ko03029,ko03032,ko04131
Hectar predicted targeting categoryother localisation
Exons1
Model size915
Cds size915
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815539.049558-CDS-S-firma_F_contig10116:3384..42991622815539.049558-CDS-S-firma_F_contig10116:3384..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10116 3385..4299 +
1696949400.3148396-CDS-S-firma_F_contig10116:3384..42991696949400.3148396-CDS-S-firma_F_contig10116:3384..4299Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10116 3385..4299 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10116.212.1prot_S-firma_F_contig10116.212.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10116 3385..4299 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10116.212.1

>prot_S-firma_F_contig10116.212.1 ID=prot_S-firma_F_contig10116.212.1|Name=mRNA_S-firma_F_contig10116.212.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=305bp
RLVSDFYEEGIWPAAYFHLFPHGLCGQLAKRKTKLGLKQWAQILLRRLDP
RFREDRTFLFCVCALIFRQEAIANARWKLTGRITSQVAASLARTLLPKIS
SRWRRAWRMELPRVSAALAGDSDVATLLKTMASVHSGGSWSIHNKRHVRL
TASSMNIQFGLPAIWFTVNPGGGNSPIVLKLAGVDVDINSRLRAGFPSYP
ERLRIIARDPVASADFFHEMIDAVLTTLLRFGAQDGDGGVLSRVKAYAGM
VEEQKRLALHCHLLVWLHGFNDFASFRNLMDETPERYAEMVRFVDSIIFN
QIATL
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mRNA from alignment at S-firma_F_contig10116:3385..4299+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10116.212.1 ID=mRNA_S-firma_F_contig10116.212.1|Name=mRNA_S-firma_F_contig10116.212.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=915bp|location=Sequence derived from alignment at S-firma_F_contig10116:3385..4299+ (Sphaerotrichia firma ET2_F female)
CGGCTCGTGTCAGACTTCTACGAGGAAGGGATTTGGCCTGCAGCTTACTT TCACCTGTTCCCGCATGGCCTGTGCGGTCAACTAGCTAAGCGAAAGACCA AGCTCGGGCTGAAGCAATGGGCGCAGATTTTGCTTCGGCGCCTCGACCCC AGATTTCGAGAGGACAGGACCTTCTTGTTCTGCGTGTGTGCCCTGATATT CAGGCAGGAAGCCATCGCCAATGCCCGTTGGAAACTCACGGGCCGCATCA CGAGCCAGGTTGCCGCGTCGTTGGCCCGCACATTACTCCCGAAGATCTCG TCACGATGGCGCAGGGCATGGAGGATGGAACTTCCACGAGTGAGTGCTGC TCTAGCGGGGGATAGTGATGTGGCTACACTTCTCAAGACGATGGCATCGG TTCACTCCGGGGGGTCATGGTCGATTCACAACAAGAGGCATGTAAGGTTG ACGGCAAGCTCGATGAACATCCAGTTCGGATTGCCGGCGATCTGGTTTAC GGTGAACCCTGGCGGTGGCAACAGTCCGATTGTCTTGAAGTTGGCTGGTG TCGACGTAGACATCAACAGCCGTCTCCGAGCTGGTTTCCCTAGCTATCCC GAGAGGTTGCGCATCATTGCCCGTGATCCGGTTGCCTCCGCCGACTTCTT TCACGAGATGATCGATGCGGTGCTGACGACTTTGCTTCGCTTTGGTGCCC AAGACGGCGACGGAGGGGTACTCTCGAGGGTGAAAGCGTATGCAGGCATG GTAGAGGAACAGAAGCGCTTGGCTCTCCACTGTCATCTCTTGGTGTGGCT GCATGGGTTCAACGATTTCGCTTCCTTCCGGAACCTAATGGATGAGACCC CGGAGCGATACGCGGAGATGGTGCGGTTTGTGGACAGCATCATCTTCAAC CAAATCGCTACGTTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10116:3385..4299+

>mRNA_S-firma_F_contig10116.212.1 ID=mRNA_S-firma_F_contig10116.212.1|Name=mRNA_S-firma_F_contig10116.212.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1830bp|location=Sequence derived from alignment at S-firma_F_contig10116:3385..4299+ (Sphaerotrichia firma ET2_F female)
CGGCTCGTGTCAGACTTCTACGAGGAAGGGATTTGGCCTGCAGCTTACTT
TCACCTGTTCCCGCATGGCCTGTGCGGTCAACTAGCTAAGCGAAAGACCA
AGCTCGGGCTGAAGCAATGGGCGCAGATTTTGCTTCGGCGCCTCGACCCC
AGATTTCGAGAGGACAGGACCTTCTTGTTCTGCGTGTGTGCCCTGATATT
CAGGCAGGAAGCCATCGCCAATGCCCGTTGGAAACTCACGGGCCGCATCA
CGAGCCAGGTTGCCGCGTCGTTGGCCCGCACATTACTCCCGAAGATCTCG
TCACGATGGCGCAGGGCATGGAGGATGGAACTTCCACGAGTGAGTGCTGC
TCTAGCGGGGGATAGTGATGTGGCTACACTTCTCAAGACGATGGCATCGG
TTCACTCCGGGGGGTCATGGTCGATTCACAACAAGAGGCATGTAAGGTTG
ACGGCAAGCTCGATGAACATCCAGTTCGGATTGCCGGCGATCTGGTTTAC
GGTGAACCCTGGCGGTGGCAACAGTCCGATTGTCTTGAAGTTGGCTGGTG
TCGACGTAGACATCAACAGCCGTCTCCGAGCTGGTTTCCCTAGCTATCCC
GAGAGGTTGCGCATCATTGCCCGTGATCCGGTTGCCTCCGCCGACTTCTT
TCACGAGATGATCGATGCGGTGCTGACGACTTTGCTTCGCTTTGGTGCCC
AAGACGGCGACGGAGGGGTACTCTCGAGGGTGAAAGCGTATGCAGGCATG
GTAGAGGAACAGAAGCGCTTGGCTCTCCACTGTCATCTCTTGGTGTGGCT
GCATGGGTTCAACGATTTCGCTTCCTTCCGGAACCTAATGGATGAGACCC
CGGAGCGATACGCGGAGATGGTGCGGTTTGTGGACAGCATCATCTTCAAC
CAAATCGCTACGTTGCGGCTCGTGTCAGACTTCTACGAGGAAGGGATTTG
GCCTGCAGCTTACTTTCACCTGTTCCCGCATGGCCTGTGCGGTCAACTAG
CTAAGCGAAAGACCAAGCTCGGGCTGAAGCAATGGGCGCAGATTTTGCTT
CGGCGCCTCGACCCCAGATTTCGAGAGGACAGGACCTTCTTGTTCTGCGT
GTGTGCCCTGATATTCAGGCAGGAAGCCATCGCCAATGCCCGTTGGAAAC
TCACGGGCCGCATCACGAGCCAGGTTGCCGCGTCGTTGGCCCGCACATTA
CTCCCGAAGATCTCGTCACGATGGCGCAGGGCATGGAGGATGGAACTTCC
ACGAGTGAGTGCTGCTCTAGCGGGGGATAGTGATGTGGCTACACTTCTCA
AGACGATGGCATCGGTTCACTCCGGGGGGTCATGGTCGATTCACAACAAG
AGGCATGTAAGGTTGACGGCAAGCTCGATGAACATCCAGTTCGGATTGCC
GGCGATCTGGTTTACGGTGAACCCTGGCGGTGGCAACAGTCCGATTGTCT
TGAAGTTGGCTGGTGTCGACGTAGACATCAACAGCCGTCTCCGAGCTGGT
TTCCCTAGCTATCCCGAGAGGTTGCGCATCATTGCCCGTGATCCGGTTGC
CTCCGCCGACTTCTTTCACGAGATGATCGATGCGGTGCTGACGACTTTGC
TTCGCTTTGGTGCCCAAGACGGCGACGGAGGGGTACTCTCGAGGGTGAAA
GCGTATGCAGGCATGGTAGAGGAACAGAAGCGCTTGGCTCTCCACTGTCA
TCTCTTGGTGTGGCTGCATGGGTTCAACGATTTCGCTTCCTTCCGGAACC
TAATGGATGAGACCCCGGAGCGATACGCGGAGATGGTGCGGTTTGTGGAC
AGCATCATCTTCAACCAAATCGCTACGTTG
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