mRNA_S-firma_F_contig10111.208.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10111.208.1
Unique NamemRNA_S-firma_F_contig10111.208.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10111.208.1 vs. uniprot
Match: UPI001C4B070C (protein tyrosine phosphatase domain-containing protein 1 isoform X1 n=2 Tax=Sceloporus undulatus TaxID=8520 RepID=UPI001C4B070C)

HSP 1 Score: 61.6 bits (148), Expect = 1.110e-7
Identity = 50/181 (27.62%), Postives = 92/181 (50.83%), Query Frame = 1 
Query:    1 VLFFNFAWAENTLPDMDTMFSVCKTVVGILEDGHKVALHAHGYGGRASLAAACCLVFRTGMKPAEAVVRMRRAAPKAL-SKPSIGFLRAFAAAAADAKAVFSALPSPMAAA-----LTRQRKALVVSSSTRDLYHVPRVVHAVCHALNAVDPDRAV---DGILGVDWSTSLETQLRRLKSA 516
            + F+NF W +  +  + T+  + K +   L++G +VA+H H   GR  +  AC LVF T M   +A++ +R   P ++ ++  +  +R F+      + VF++    + A      L RQR  L+    +R+L HVP+++H VC  L  +  +R +   + +   D S  +E  + +L SA
Sbjct:  196 IYFYNFGWKDYGVASLTTILDMVKVMTFALQEG-RVAIHCHAGLGRTGVLIACYLVFATRMTADQAILFVRAKRPNSIQTRGQLLCVREFSQFLIPLRNVFASCEPKVHAVTLSQYLIRQRH-LLHGYESRNLKHVPKLIHLVCKLLLDLAENRQMIEQELVDLPDLSAEIEETVSQLSSA 374
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10111.208.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
UPI001C4B070C1.110e-727.62protein tyrosine phosphatase domain-containing pro... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10111contigS-firma_F_contig10111:100..690 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog31033.ENSTRUP00000021814
Preferred namePTPDC1
PFAMsDSPc
Max annot lvl33208|Metazoa
KEGG koko:K18078
GOsGO:0003674,GO:0003824,GO:0004721,GO:0004725,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005737,GO:0006464,GO:0006470,GO:0006793,GO:0006796,GO:0006807,GO:0006996,GO:0007154,GO:0007165,GO:0007166,GO:0007224,GO:0008150,GO:0008152,GO:0009987,GO:0016043,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0019538,GO:0022607,GO:0023052,GO:0030030,GO:0030031,GO:0031974,GO:0031981,GO:0035335,GO:0036211,GO:0042578,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043412,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0044782,GO:0050789,GO:0050794,GO:0050896,GO:0051716,GO:0060271,GO:0065007,GO:0070013,GO:0070925,GO:0071704,GO:0071840,GO:0120031,GO:0120036,GO:0140096,GO:1901564
Evalue3.36e-10
EggNOG OGsCOG2453@1|root,KOG1720@2759|Eukaryota,39I9A@33154|Opisthokonta,3BF9V@33208|Metazoa,3CXSY@33213|Bilateria,48BSJ@7711|Chordata,49AJG@7742|Vertebrata,4A1MZ@7898|Actinopterygii
DescriptionProtein tyrosine phosphatase
COG categoryV
BRITEko00000,ko01000,ko01009
Hectar predicted targeting categoryother localisation
Exons1
Model size591
Cds size591
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815538.6922722-CDS-S-firma_F_contig10111:99..6901622815538.6922722-CDS-S-firma_F_contig10111:99..690Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10111 100..690 +
1696949400.1024706-CDS-S-firma_F_contig10111:99..6901696949400.1024706-CDS-S-firma_F_contig10111:99..690Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10111 100..690 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10111.208.1prot_S-firma_F_contig10111.208.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10111 100..690 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10111.208.1

>prot_S-firma_F_contig10111.208.1 ID=prot_S-firma_F_contig10111.208.1|Name=mRNA_S-firma_F_contig10111.208.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=197bp
VLFFNFAWAENTLPDMDTMFSVCKTVVGILEDGHKVALHAHGYGGRASLA
AACCLVFRTGMKPAEAVVRMRRAAPKALSKPSIGFLRAFAAAAADAKAVF
SALPSPMAAALTRQRKALVVSSSTRDLYHVPRVVHAVCHALNAVDPDRAV
DGILGVDWSTSLETQLRRLKSAVNDGQWGALNAAATALQAQLLLDWL
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mRNA from alignment at S-firma_F_contig10111:100..690+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10111.208.1 ID=mRNA_S-firma_F_contig10111.208.1|Name=mRNA_S-firma_F_contig10111.208.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=591bp|location=Sequence derived from alignment at S-firma_F_contig10111:100..690+ (Sphaerotrichia firma ET2_F female)
GTCCTCTTCTTCAACTTTGCCTGGGCGGAGAACACCCTGCCCGACATGGA
CACCATGTTCAGCGTGTGCAAAACGGTGGTGGGCATCCTGGAAGACGGCC
ACAAAGTTGCCTTGCACGCTCACGGGTACGGCGGGCGGGCCAGCCTTGCC
GCCGCCTGCTGCCTGGTGTTCCGCACCGGGATGAAGCCCGCAGAGGCTGT
GGTGCGGATGAGGCGCGCGGCGCCCAAGGCCTTGTCCAAGCCCAGCATTG
GGTTCTTGCGGGCGTTTGCTGCGGCCGCTGCTGACGCCAAGGCCGTCTTT
TCAGCGCTGCCGTCCCCCATGGCCGCCGCCCTCACCCGCCAGCGCAAGGC
CCTTGTGGTGTCCAGCTCCACCCGTGACCTGTACCACGTCCCCCGGGTGG
TGCACGCCGTTTGCCACGCGTTGAACGCGGTGGACCCGGACCGGGCTGTC
GACGGCATTCTGGGCGTCGACTGGTCGACGTCGTTGGAAACCCAGCTCCG
GCGCCTCAAGTCCGCCGTCAACGACGGGCAGTGGGGGGCCTTGAACGCCG
CGGCGACCGCCCTCCAGGCCCAGCTCCTCCTGGACTGGCTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10111:100..690+

>mRNA_S-firma_F_contig10111.208.1 ID=mRNA_S-firma_F_contig10111.208.1|Name=mRNA_S-firma_F_contig10111.208.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1182bp|location=Sequence derived from alignment at S-firma_F_contig10111:100..690+ (Sphaerotrichia firma ET2_F female)
GTCCTCTTCTTCAACTTTGCCTGGGCGGAGAACACCCTGCCCGACATGGA
CACCATGTTCAGCGTGTGCAAAACGGTGGTGGGCATCCTGGAAGACGGCC
ACAAAGTTGCCTTGCACGCTCACGGGTACGGCGGGCGGGCCAGCCTTGCC
GCCGCCTGCTGCCTGGTGTTCCGCACCGGGATGAAGCCCGCAGAGGCTGT
GGTGCGGATGAGGCGCGCGGCGCCCAAGGCCTTGTCCAAGCCCAGCATTG
GGTTCTTGCGGGCGTTTGCTGCGGCCGCTGCTGACGCCAAGGCCGTCTTT
TCAGCGCTGCCGTCCCCCATGGCCGCCGCCCTCACCCGCCAGCGCAAGGC
CCTTGTGGTGTCCAGCTCCACCCGTGACCTGTACCACGTCCCCCGGGTGG
TGCACGCCGTTTGCCACGCGTTGAACGCGGTGGACCCGGACCGGGCTGTC
GACGGCATTCTGGGCGTCGACTGGTCGACGTCGTTGGAAACCCAGCTCCG
GCGCCTCAAGTCCGCCGTCAACGACGGGCAGTGGGGGGCCTTGAACGCCG
CGGCGACCGCCCTCCAGGCCCAGCTCCTCCTGGACTGGCTGGTCCTCTTC
TTCAACTTTGCCTGGGCGGAGAACACCCTGCCCGACATGGACACCATGTT
CAGCGTGTGCAAAACGGTGGTGGGCATCCTGGAAGACGGCCACAAAGTTG
CCTTGCACGCTCACGGGTACGGCGGGCGGGCCAGCCTTGCCGCCGCCTGC
TGCCTGGTGTTCCGCACCGGGATGAAGCCCGCAGAGGCTGTGGTGCGGAT
GAGGCGCGCGGCGCCCAAGGCCTTGTCCAAGCCCAGCATTGGGTTCTTGC
GGGCGTTTGCTGCGGCCGCTGCTGACGCCAAGGCCGTCTTTTCAGCGCTG
CCGTCCCCCATGGCCGCCGCCCTCACCCGCCAGCGCAAGGCCCTTGTGGT
GTCCAGCTCCACCCGTGACCTGTACCACGTCCCCCGGGTGGTGCACGCCG
TTTGCCACGCGTTGAACGCGGTGGACCCGGACCGGGCTGTCGACGGCATT
CTGGGCGTCGACTGGTCGACGTCGTTGGAAACCCAGCTCCGGCGCCTCAA
GTCCGCCGTCAACGACGGGCAGTGGGGGGCCTTGAACGCCGCGGCGACCG
CCCTCCAGGCCCAGCTCCTCCTGGACTGGCTG
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