mRNA_S-firma_F_contig10079.151.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10079.151.1
Unique NamemRNA_S-firma_F_contig10079.151.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JPA3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA3_9PHAE)

HSP 1 Score: 283 bits (724), Expect = 3.250e-90
Identity = 169/313 (53.99%), Postives = 220/313 (70.29%), Query Frame = 1
Query:    1 MAGVVFSVVLSLSCLRSVLVLDAVS-SSNIVSRVTQAVSM-GTDEVARRRRISVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930
            MA   ++VVL+L+  R+ LVLDAV   S+ V+R+ +AV+  G  +V     ++  S +Q P +A G SR+R LHKRLLAMHFIA  +  AG A+YM  VS+ SCL T +A++ T+LLYDASLVLFL+ KTSVTNGNR LA WE CITWWSR Y W  L   A FLA     V + EG+ CLT   +E E   FSDT+GF+ NN +LI+QF LLLAMF+KP+++PQ  TQSGGAVYRR+V RN+ CT+ I FTY +TT++VV+  L ++    I+AA++AD  P  NI +TL LTEI+LPLG SSC K++ A T
Sbjct:    1 MATAAYAVVLALTATRTALVLDAVCFRSSPVARIARAVTARGLSQV-----LASTSPRQRPPSA-GGSRVRALHKRLLAMHFIAIANMSAGCAKYMPDVSELSCLATRRAMVATILLYDASLVLFLVGKTSVTNGNRALAIWEACITWWSRFYGWVVLTTGALFLAAQASSVPSLEGTFCLTLDLKEDEDVTFSDTLGFVINNGILIIQFALLLAMFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCLTEISLPLGFSSCVKAIKAET 306          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JPA0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPA0_9PHAE)

HSP 1 Score: 224 bits (572), Expect = 4.080e-68
Identity = 131/236 (55.51%), Postives = 158/236 (66.95%), Query Frame = 1
Query:  205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDAS----------LVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEI 879
            R LH+RLLAMH +A ++  AG A+YMLP SDTSC ++H+A I +LL YD S          LVLFLLAKTSVTNGNR L  WE  ITWWSR +AW YLP+S   L L  P   N EG+ C     +E E     D  GF  NN++L VQ+VLLLAMFIKPML+   +TQSGGAVYRRVV RNI+CT+ I   Y ITT+VVV+ALL S      +AA + D  P+INI +TL LTE+
Sbjct:    9 RTLHRRLLAMHVVASVNMGAGAAKYMLPPSDTSCRVSHRAWIASLLFYDVSAPQAVADGACLVLFLLAKTSVTNGNRTLTSWENGITWWSRFWAWIYLPVSGTVLGLSFPGEVNSEGTACFNSYGEETETREVGDVAGFAGNNVLLTVQYVLLLAMFIKPMLVSHGNTQSGGAVYRRVVIRNIVCTIGIACAYVITTVVVVLALLSSRPDTD-KAAAVGDIVPSINICVTLCLTEV 243          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LN54_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN54_ECTSI)

HSP 1 Score: 217 bits (553), Expect = 3.860e-66
Identity = 115/187 (61.50%), Postives = 137/187 (73.26%), Query Frame = 1
Query:  205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITT 762
            R LH+RLLAMH IA ++  AG A+YMLP+SDTSC ++H+A I +LL YDA LVLFLLAKT VTNGNR L  WE  ITWWSR +AW YLP+SA FL L  P   N EG+ C    R+E +     D  GF +NN++L VQ+VLLLAMFIKPML+ Q +TQSGGAVYRRVV RNI+CT+ I   Y ITT
Sbjct:    9 RTLHRRLLAMHVIASVNMSAGAAKYMLPLSDTSCRVSHRAWIASLLFYDACLVLFLLAKTGVTNGNRTLTCWEKGITWWSRFWAWIYLPVSATFLGLTFPGEVNSEGTACFNSYREETDTAEVGDVAGFASNNVLLTVQYVLLLAMFIKPMLVSQGNTQSGGAVYRRVVIRNIVCTIGIACAYVITT 195          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5K249_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K249_9PHAE)

HSP 1 Score: 204 bits (520), Expect = 1.820e-61
Identity = 110/194 (56.70%), Postives = 139/194 (71.65%), Query Frame = 1
Query:  349 ASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930
            ASLVLFL+ K SVTNGNR LA WE CITWWSR Y W  L   AFFLA     V + EG+ CLT   QE E   FSD +GF+ NN +LI+QF LLLA+F+KP+++PQ  TQSGGAVYRR+V RN+ CT+ I FTY +TT++VV+  L ++    I+AA++AD  P  NI +TL LTE++LPLG SSC K++ A T
Sbjct:   13 ASLVLFLVGKASVTNGNRALAIWEACITWWSRFYGWVVLTTGAFFLAAQASSVPSLEGTFCLTLDLQEDEDVTFSDALGFVINNGILIIQFALLLAIFVKPLMIPQGHTQSGGAVYRRLVMRNVACTIAITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCLTELSLPLGFSSCVKAIKAET 205          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JY97_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JY97_9PHAE)

HSP 1 Score: 196 bits (499), Expect = 3.200e-56
Identity = 114/254 (44.88%), Postives = 163/254 (64.17%), Query Frame = 1
Query:  169 QAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSR---CLTGTRQEGERGNFSDTV-GFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKS 915
            +A T + G+ ++R LH  LL  HF++ I  +A + +Y LPV++ +C  THK ++  +LLYDASL+ FLLAK  VTNG+R+LA WET I W SR YAW YLP+ A  +        N+E S    C+ G   + +    +D V G+ +N   L++QFVLLL +F++P+L+    +QSG A+YR VV +NI CT+ +V  Y +TT+VV+ AL+  S      A+  AD TP +N  +TL LTEIALPLG SSC+K+
Sbjct:   70 RARTHSAGSPQVRFLHITLLVTHFVSVITGVAAVFKYTLPVTEANCTATHKVLVSMILLYDASLLTFLLAKVHVTNGHRKLAWWETVIVWISRGYAWIYLPIVAVVIPYQFRGGTNDEASVKTFCVNGYHMDDDTDEVNDNVLGYGSNMGSLVIQFVLLLILFVRPLLVRLEGSQSGEAMYRMVVIKNITCTIAVVTAYAVTTVVVIAALIRQSNDSN-TASLFADITPLVNQFVTLCLTEIALPLGFSSCWKA 322          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LG96_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG96_ECTSI)

HSP 1 Score: 171 bits (433), Expect = 7.120e-47
Identity = 116/318 (36.48%), Postives = 176/318 (55.35%), Query Frame = 1
Query:    4 AGVVFSVVLSLSCLRSVLVLDAVSS----SNIVSRVTQAVSM-----GTDEVARRRRI---SVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSCL-THKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTV-GFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKS 915
            A V+ S+ LSL   R++  +DA+       ++V R  +A         + +  RR  +      S  +A T + G+ ++R LH  LL  H ++ +  +A + +Y LPV+  +C  THK ++  LLLYDASL+ FLLAK  VTNG+R+LA WET I W SR YAW YLP+ A  +        N+E + C+ G   + +     + + G+ +N   LI+QFVLLL +F++P+L+    +QSG A+YRRVV +NI CT+ +V  Y +TT+VV+ ALL  +           D+              IALPLG +SC+K+
Sbjct:    3 AEVILSITLSLILARTLFAMDAIRDIRGYKSVVCRAAKAAHSLQQPSSSSQGGRRPSLPSNDAVSTPRARTHSAGSPQVRFLHITLLVTHVVSVMAVVAALFKYTLPVTVENCTATHKVLVSMLLLYDASLLTFLLAKVHVTNGHRKLAWWETAIVWISRGYAWIYLPIVAVAIPYQFRGGTNDERTFCINGYNMDDDADEVHENIRGYGSNMGSLIIQFVLLLILFVRPLLVRLEGSQSGEAIYRRVVIKNITCTIAVVTAYAVTTVVVIAALLRQNN----------DSNT------------IALPLGFTSCWKA 298          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LG97_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LG97_ECTSI)

HSP 1 Score: 164 bits (414), Expect = 3.170e-44
Identity = 99/245 (40.41%), Postives = 147/245 (60.00%), Query Frame = 1
Query:   67 AVSSSNIVSRVTQAVSMGTDEVARRRRISVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEG----ERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALL 786
            A +SS ++     + S G      R  + +A R ++ + + G+ ++R LH  LL  H +A I   + + +Y LPV+ ++C  THK      +L+DASL+ FLL K  VTNG R+L+ WE  + W  R +AW YLPL++ F++   P   NEEG+ C  G +++     ER    +  G+   N ML+VQ+VLLL +F++P+++     QSGGAVYR VV RNI CTV +V +Y ITTIV V+ALL
Sbjct:   53 AANSSGLLGSQRSSSSQGRRSAPNRPPV-LAQRGRSASASAGSPKVRFLHIALLLEHIVALIAIASTVLKYALPVTASNCNATHKVSTAFAILFDASLLTFLLFKVDVTNGIRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGGTNEEGTFCENGFKRDEDVNYEREASDNAYGYAVTNAMLLVQYVLLLILFVRPLMVRLEGAQSGGAVYRSVVIRNISCTVAVVVSYIITTIVTVIALL 296          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5K6Y0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K6Y0_9PHAE)

HSP 1 Score: 146 bits (368), Expect = 2.460e-38
Identity = 78/145 (53.79%), Postives = 95/145 (65.52%), Query Frame = 1
Query:  205 RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDAS------LVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQ 618
            R LH+RLLAMH +A ++  AG A+YM P+SD SC ++H+A I +LLLYD S      LVLFLLAKTSVTNGNR L  WE  ITWWSR +AW YLP+SA  L L  P   N EG+ C     +E E     D  GF +NN++L VQ
Sbjct:    9 RTLHRRLLAMHVVASVNMSAGAAKYMFPLSDASCRVSHRAWIASLLLYDVSAPQAACLVLFLLAKTSVTNGNRTLTSWEKGITWWSRFWAWIYLPVSATVLGLRFPGEVNSEGTACFNSYGEETETREVGDVAGFASNNVLLTVQ 153          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: D8LN45_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LN45_ECTSI)

HSP 1 Score: 143 bits (360), Expect = 6.910e-38
Identity = 80/152 (52.63%), Postives = 109/152 (71.71%), Query Frame = 1
Query:  475 AFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVSSCFKSVVAST 930
            AF LA  +  V + EG+ CL    QE E   FSDT+GF+ NN +L++QFVLLLAMF+KP+++PQ   QSGGAVYRR+V RN+ CT+ I FTY +TT++VV+  L ++    I+AA++AD  P  NI +TL +TE++LPLG SSC KS+ A T
Sbjct:   25 AFILASQVSSVPSPEGNFCLALDLQENEDVTFSDTLGFVFNNGILVIQFVLLLAMFVKPLMIPQGHIQSGGAVYRRLVMRNVACTIGITFTYAVTTVIVVLGFLTTA-PGSIKAAQLADLLPTANIFVTLCVTEMSLPLGFSSCVKSIKAET 175          
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Match: A0A6H5JQ65_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ65_9PHAE)

HSP 1 Score: 144 bits (362), Expect = 2.870e-37
Identity = 86/210 (40.95%), Postives = 123/210 (58.57%), Query Frame = 1
Query:  175 PTTATGASRI-RMLHKRLLAMHFIACIHAIAGIAEYMLPVSDTSC-LTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVYAWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEG----ERGNFSDTVGFLTNNMMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTYTITTIVVVVALL 786
            P  A G     R LH  L+  H +A I   + + +Y LPV+ ++C  THK      +L+DASL+ FLL K  VTNG R+L+ WE  + W  R +AW YLPL++ F++   P     +G+ C     ++     ER    +  G+   N ML+VQ+VLLL +F++P+++     QSGGAVYR VV RN+ CT  +V +Y ITTIV V+ALL
Sbjct:   41 PLVARGVQNASRSLHVALVVEHIVALIAIASTVLKYALPVTASNCNATHKISTAFAILFDASLLTFLLFKVDVTNGMRKLSCWEKGVIWICRAFAWIYLPLASIFVSATYPGANIYQGTFCENSFNRDEDVNYEREASDNAFGYAVTNAMLLVQYVLLLILFVRPLMVRLEGVQSGGAVYRSVVVRNVSCTAAVVVSYIITTIVTVIALL 250          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10079.151.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 15
Match NameE-valueIdentityDescription
A0A6H5JPA3_9PHAE3.250e-9053.99Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JPA0_9PHAE4.080e-6855.51Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN54_ECTSI3.860e-6661.50Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K249_9PHAE1.820e-6156.70Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JY97_9PHAE3.200e-5644.88Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LG96_ECTSI7.120e-4736.48Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D8LG97_ECTSI3.170e-4440.41Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K6Y0_9PHAE2.460e-3853.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LN45_ECTSI6.910e-3852.63Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JQ65_9PHAE2.870e-3740.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10079contigS-firma_F_contig10079:1201..4878 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-05_003440.1
Exons8
Model size1038
Cds size1038
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10079.151.1prot_S-firma_F_contig10079.151.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10079 1201..4878 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.9647288-CDS-S-firma_F_contig10079:1200..13621622815532.9647288-CDS-S-firma_F_contig10079:1200..1362Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 1201..1362 -
1696949394.7631302-CDS-S-firma_F_contig10079:1200..13621696949394.7631302-CDS-S-firma_F_contig10079:1200..1362Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 1201..1362 -
1622815532.9762542-CDS-S-firma_F_contig10079:1818..18811622815532.9762542-CDS-S-firma_F_contig10079:1818..1881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 1819..1881 -
1696949394.7718556-CDS-S-firma_F_contig10079:1818..18811696949394.7718556-CDS-S-firma_F_contig10079:1818..1881Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 1819..1881 -
1622815532.9921489-CDS-S-firma_F_contig10079:2086..22811622815532.9921489-CDS-S-firma_F_contig10079:2086..2281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 2087..2281 -
1696949394.7818766-CDS-S-firma_F_contig10079:2086..22811696949394.7818766-CDS-S-firma_F_contig10079:2086..2281Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 2087..2281 -
1622815533.0030553-CDS-S-firma_F_contig10079:2673..27721622815533.0030553-CDS-S-firma_F_contig10079:2673..2772Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 2674..2772 -
1696949394.7980661-CDS-S-firma_F_contig10079:2673..27721696949394.7980661-CDS-S-firma_F_contig10079:2673..2772Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 2674..2772 -
1622815533.013621-CDS-S-firma_F_contig10079:3060..31151622815533.013621-CDS-S-firma_F_contig10079:3060..3115Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 3061..3115 -
1696949394.808231-CDS-S-firma_F_contig10079:3060..31151696949394.808231-CDS-S-firma_F_contig10079:3060..3115Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 3061..3115 -
1622815533.026337-CDS-S-firma_F_contig10079:3539..36551622815533.026337-CDS-S-firma_F_contig10079:3539..3655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 3540..3655 -
1696949394.8173325-CDS-S-firma_F_contig10079:3539..36551696949394.8173325-CDS-S-firma_F_contig10079:3539..3655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 3540..3655 -
1622815533.0398133-CDS-S-firma_F_contig10079:4020..41621622815533.0398133-CDS-S-firma_F_contig10079:4020..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 4021..4162 -
1696949394.8260415-CDS-S-firma_F_contig10079:4020..41621696949394.8260415-CDS-S-firma_F_contig10079:4020..4162Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 4021..4162 -
1622815533.054935-CDS-S-firma_F_contig10079:4672..48781622815533.054935-CDS-S-firma_F_contig10079:4672..4878Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 4673..4878 -
1696949394.8406978-CDS-S-firma_F_contig10079:4672..48781696949394.8406978-CDS-S-firma_F_contig10079:4672..4878Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10079 4673..4878 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10079.151.1

>prot_S-firma_F_contig10079.151.1 ID=prot_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=346bp
MAGVVFSVVLSLSCLRSVLVLDAVSSSNIVSRVTQAVSMGTDEVARRRRI
SVASRQQAPTTATGASRIRMLHKRLLAMHFIACIHAIAGIAEYMLPVSDT
SCLTHKAVIGTLLLYDASLVLFLLAKTSVTNGNRELAGWETCITWWSRVY
AWGYLPLSAFFLALFLPVVANEEGSRCLTGTRQEGERGNFSDTVGFLTNN
MMLIVQFVLLLAMFIKPMLLPQSSTQSGGAVYRRVVNRNILCTVCIVFTY
TITTIVVVVALLGSSFTVRIEAAEIADATPAINIILTLFLTEIALPLGVS
SCFKSVVASTKPTSGGLTTVRQPNSTLARGKTQAPINRNTGPTIIV
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mRNA from alignment at S-firma_F_contig10079:1201..4878-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10079.151.1 ID=mRNA_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3678bp|location=Sequence derived from alignment at S-firma_F_contig10079:1201..4878- (Sphaerotrichia firma ET2_F female)
ATGGCTGGAGTAGTGTTCTCGGTGGTATTGAGCCTCAGCTGCCTCCGGAG CGTGTTGGTGCTCGATGCGGTGTCTTCTTCGAATATCGTGTCGCGAGTCA CCCAAGCTGTCTCAATGGGAACGGATGAGGTGGCGCGGAGAAGGAGAATT TCAGTCGCCTCACGACAACAAGCGCCCACCACCGCCACTGGTGCATCGCG AATCAGGTTGGTTGTGGACATCTGGTGTCGCCACGTTTTGGAAAATCTGG TAAGAAACTGGAAACAAAATCCGACTGCCGCTAGACTACTGTAGAGAGAG TAGCGTCACGGGCGCGATTTCTACGTTGACATGCGCATCGTGGCAGCGCA AGAAGGGTGGAATCAGGCGTCTAGTCGCTTGTCTAGTCACTTGCCTAGTG CTGAACGTAAGTGACGGGGACTTTACGTTCCACACTGCCGTAGCGACTGA AGGCTAGATACGTAGGCTGGACTAGACTACGTAGTGGTGTGGCCATGTTG TTGCTGGAGTCGAGCAACTTTGCAGAAAGATCTACAGGAGGAGTAGACTG CTTCGGTTTTCCTTCGCGCCAAAGTAGATGTTTGAATATGATATGGTGTG CTTTGTCGAATGGGAAGAGAGAAAATGGGAGGTGATCTCGATATTATTCC GAAGAAGGCAAGATCGCCACACCGCCCTATCTTCCGTTCCGACGATTTGT GGTGCATGTACGTCAGGATGCTTCACAAGAGGCTCCTGGCGATGCACTTC ATAGCGTGCATTCATGCGATTGCTGGCATCGCGGAGTACATGCTGCCGGT ATCGGATACGTCGTGCCTGACCCACAAGGCCGTCATTGGGACACTCTTGC TGTACGATGTGAGTTTGGGTCGCAATACGGCATGAGTTGGGACATGATGA GCTCTCTCGTCATAGATCGAAGAGTCAGGATGGCGGTCAAAGAATTATCA GCTTTGGGGAACGCTTTCTATCACGGTTGTTCTCTAGTCTCGTTCCGACA GTTGCGATATTCTTGTGGCTGCTCCTTTCGAACAAAACGATGGTAAGCAT GTTTATCAGTGACATCTCGCAAATCGAATGCTGTCTGTTCCGTGCAAACT ATTGCCCCATTCGCGTGCGATTGACACGAAACTCAGGCCTGTGCCTCCGA CCTGGTTTCTCCAGAGCGAGAACAAACGCGCTCCACTGCACACTGTACTT TTCTGTGTGCTCTTTATGGACAGGCAAGCTTGGTGCTCTTTCTCCTCGCA AAGACAAGCGTCACGAACGGGAATAGAGAGCTTGCCGGGTGGGAAACTTG TATCACCTGGTGGTCGCGCGTCTATGCCTGGGGGTACTTGTGAGTGTGAT CAGCCGCGTCGGATGTGTTTGTATAAATTGCTTGTCTTTCTTCAGAAGCC AGCTCGTCCGTGTCGTAGTGTTGCTGGATGAAACGAGGCTTCATTTCAAC CGTACTGTAGTACGAGCCGGGAGTATGGAAGGTTTAGCACCATAACACAT GTACACATCGACTATCTCTAATCACCGCGCACCTCATCTTTATCTCCACA GTAGTAGTCTTGATGTTTTTGTTTTTGCTGTTGTTGTTGTTGTTGTTGTT GTTGTTGTTGTTGTTGTTGTCCAGGGCCAAGCTATGCTTATCCCATTTTG TCGCCGCGTTGGTCATTCTAGATGATTTCTTTTACATGCCCCTTGACCGA GAGCCCTACCATGGGCCAACCTATGAACCGCCACGGAACCGTGCCTCTCG TTGGTCTCAACAGGCCCTTGTCTGCGTTTTTCCTGGCCCTTTTTCTTCCC GTCGTTGCCAACGAAGAGGTGAGTTCTCCTTGTTGATTCCAGTAGTTAAC TGTCCTCGAACACCATTAACTCCGTTGTCGTCGCCGAAAACTTGCAGTCG AGTCGTCAAGCCCTTTCGAGAGTTGACAAAGCAACACTCACTCCTGGTCA ATACTTCGTTTGCAATGCGATCACTACAGAAAAGCTCTACAACAATAGTC CTCATTGATACTCGAGTGCAACCTGAACATGCTGAAAAGTTCCATTATTC TCTACACTAGTCTTACCATCATTGCTGGTGTACTGAAACGTTTGCTTTTG TACTAGGGGTCCCGCTGTCTTACTGGCACGAGACAAGAGGGCGAGCGCGG CAACTTTTCGGATACTGTCGGGTTTCTCACCAACAACATGATGTTGATAG TCCAGGTGATCGGGTGCAGCATGAAACCAACGGAAGGATGTGCGAATCTA TTACTCCGTATGACTATTATGTTGGCCATCCGACAATGTGCGAATCTATC ACAGTCTTACACACGTTGCTTCTATTTACACGAGGGAAGTTTTAAAGAGG GGAGCGTGGCGAGGCGCCGCATTGGCAGCGGTTCATCTTGCTATGTGTGT CCCCGAACCGAACATGCCGGTTGCCAACTTTAGTAGTTCGTGAGCGGGTG AGGTTGTTGCGGGCATTAAAAGGTGTTTTGGAATAACAAGCTTGTTTCTT GCCACCTGCCGACATCAACCACAATGTTTCCTACCGTCGCTTACCACCTC CTCCCCTCGCCCGCCTTGCCCGGTCCAACGTTGACATTTCCATCCAGTTC GTGCTGCTGCTGGCGATGTTCATCAAGCCCATGCTTCTTCCGCAAAGCAG CACGCAGTCCGGAGGAGCCGTCTACCGTCGGGTGGTGAACAGGAACATCT TGTGCACCGTCTGCATCGTCTTCACGTATACCATCACTACGATCGTTGTC GTCGTCGCCCTGCTAGGTTCTTCATTCACGGTGAGGATAGAAGTACAAAC AATACAACGGCGGTGACGTGTAGTCTAGTTTAACCTCTTCACGTCAAACC CCGCCCGAAAACACGACGAAGACGCAAAAAGGTATACGTACAAACAATCC GCCCACCCTCCCATTCGCCGCGGTGGCTTGAAGCTTCGCGTGTTGTTGTG TAATGTCATGGAACGTACGTTGCTCAACCGTCGGATTTCCGCTGCAGGCG GCCGAAATCGCAGACGCCACGCCAGCGATAAATATCATCCTGACGCTGTT CTTGACGGAGGTGGGAATTGGTATTATATCATTCCGTTTCTCAACGTGCT GGGAATCAAGGCTTCGTATCTGCTAGTCAGTGGTGAACTCCTGTTTGTGG ATGGACTTTATCGATAAGCCATCAAGGACATACCACACAGCACGTTAGCA CCGACGCACTCATTGATTTTTTTGACAGTTGTAGTCTCACCCGCTGGTAG ATAATACAGTGCTACAACACCTTGTTCGTGGGATACACGTGTTTCGAGAT TCAGAAGCGGGGGCTTAGCACTTTTGTACTCGTTTTTGGGCTCGACAACA ACCGATCCAGACCTTGCATCTTGGAAACTGTGCTTGTAACTTGATGTTGC AAACCCTGACGAAAATGGACAGGCAAGCAGTCGACGTTTGGTTCTGACGT CAAGCGCCCCTTGAAACCACTCAAAAATGCGCAACAATGTTCCGTTTTCG ACTTCCTCCCCGTCAGATTGCGCTGCCCTTGGGGGTATCGAGCTGCTTCA AATCCGTTGTCGCCAGCACAAAGCCTACCAGTGGCGGCCTAACGACCGTG CGGCAACCGAACTCAACGCTTGCAAGGGGCAAGACGCAGGCACCAATCAA CCGCAATACCGGACCTACAATTATTGTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10079:1201..4878-

>mRNA_S-firma_F_contig10079.151.1 ID=mRNA_S-firma_F_contig10079.151.1|Name=mRNA_S-firma_F_contig10079.151.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=2076bp|location=Sequence derived from alignment at S-firma_F_contig10079:1201..4878- (Sphaerotrichia firma ET2_F female)
ATGGCTGGAGTAGTGTTCTCGGTGGTATTGAGCCTCAGCTGCCTCCGGAG
CGTGTTGGTGCTCGATGCGGTGTCTTCTTCGAATATCGTGTCGCGAGTCA
CCCAAGCTGTCTCAATGGGAACGGATGAGGTGGCGCGGAGAAGGAGAATT
TCAGTCGCCTCACGACAACAAGCGCCCACCACCGCCACTGGTGCATCGCG
AATCAGATGGCTGGAGTAGTGTTCTCGGTGGTATTGAGCCTCAGCTGCCT
CCGGAGCGTGTTGGTGCTCGATGCGGTGTCTTCTTCGAATATCGTGTCGC
GAGTCACCCAAGCTGTCTCAATGGGAACGGATGAGGTGGCGCGGAGAAGG
AGAATTTCAGTCGCCTCACGACAACAAGCGCCCACCACCGCCACTGGTGC
ATCGCGAATCAGGATGCTTCACAAGAGGCTCCTGGCGATGCACTTCATAG
CGTGCATTCATGCGATTGCTGGCATCGCGGAGTACATGCTGCCGGTATCG
GATACGTCGTGCCTGACCCACAAGGCCGTCATTGGGACACTCTTGCTGTA
CGATGATGCTTCACAAGAGGCTCCTGGCGATGCACTTCATAGCGTGCATT
CATGCGATTGCTGGCATCGCGGAGTACATGCTGCCGGTATCGGATACGTC
GTGCCTGACCCACAAGGCCGTCATTGGGACACTCTTGCTGTACGATGCAA
GCTTGGTGCTCTTTCTCCTCGCAAAGACAAGCGTCACGAACGGGAATAGA
GAGCTTGCCGGGTGGGAAACTTGTATCACCTGGTGGTCGCGCGTCTATGC
CTGGGGGTACTTGCAAGCTTGGTGCTCTTTCTCCTCGCAAAGACAAGCGT
CACGAACGGGAATAGAGAGCTTGCCGGGTGGGAAACTTGTATCACCTGGT
GGTCGCGCGTCTATGCCTGGGGGTACTTGCCCTTGTCTGCGTTTTTCCTG
GCCCTTTTTCTTCCCGTCGTTGCCAACGAAGAGGCCCTTGTCTGCGTTTT
TCCTGGCCCTTTTTCTTCCCGTCGTTGCCAACGAAGAGGGGTCCCGCTGT
CTTACTGGCACGAGACAAGAGGGCGAGCGCGGCAACTTTTCGGATACTGT
CGGGTTTCTCACCAACAACATGATGTTGATAGTCCAGGGGTCCCGCTGTC
TTACTGGCACGAGACAAGAGGGCGAGCGCGGCAACTTTTCGGATACTGTC
GGGTTTCTCACCAACAACATGATGTTGATAGTCCAGTTCGTGCTGCTGCT
GGCGATGTTCATCAAGCCCATGCTTCTTCCGCAAAGCAGCACGCAGTCCG
GAGGAGCCGTCTACCGTCGGGTGGTGAACAGGAACATCTTGTGCACCGTC
TGCATCGTCTTCACGTATACCATCACTACGATCGTTGTCGTCGTCGCCCT
GCTAGGTTCTTCATTCACGGTGAGGATAGAATTCGTGCTGCTGCTGGCGA
TGTTCATCAAGCCCATGCTTCTTCCGCAAAGCAGCACGCAGTCCGGAGGA
GCCGTCTACCGTCGGGTGGTGAACAGGAACATCTTGTGCACCGTCTGCAT
CGTCTTCACGTATACCATCACTACGATCGTTGTCGTCGTCGCCCTGCTAG
GTTCTTCATTCACGGTGAGGATAGAAGCGGCCGAAATCGCAGACGCCACG
CCAGCGATAAATATCATCCTGACGCTGTTCTTGACGGAGGCGGCCGAAAT
CGCAGACGCCACGCCAGCGATAAATATCATCCTGACGCTGTTCTTGACGG
AGATTGCGCTGCCCTTGGGGGTATCGAGCTGCTTCAAATCCGTTGTCGCC
AGCACAAAGCCTACCAGTGGCGGCCTAACGACCGTGCGGCAACCGAACTC
AACGCTTGCAAGGGGCAAGACGCAGGCACCAATCAACCGCAATACCGGAC
CTACAATTATTGTCATTGCGCTGCCCTTGGGGGTATCGAGCTGCTTCAAA
TCCGTTGTCGCCAGCACAAAGCCTACCAGTGGCGGCCTAACGACCGTGCG
GCAACCGAACTCAACGCTTGCAAGGGGCAAGACGCAGGCACCAATCAACC
GCAATACCGGACCTACAATTATTGTC
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