mRNA_S-firma_F_contig11127.1493.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11127.1493.1
Unique NamemRNA_S-firma_F_contig11127.1493.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11127.1493.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11127contigS-firma_F_contig11127:3016..3387 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size374
Cds size324
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.4790394-UTR-S-firma_F_contig11127:3015..30631622815662.4790394-UTR-S-firma_F_contig11127:3015..3063Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11127 3016..3063 -
1696949486.812641-UTR-S-firma_F_contig11127:3015..30631696949486.812641-UTR-S-firma_F_contig11127:3015..3063Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11127 3016..3063 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.4900055-CDS-S-firma_F_contig11127:3063..33871622815662.4900055-CDS-S-firma_F_contig11127:3063..3387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11127 3064..3387 -
1696949486.8210351-CDS-S-firma_F_contig11127:3063..33871696949486.8210351-CDS-S-firma_F_contig11127:3063..3387Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11127 3064..3387 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11127.1493.1prot_S-firma_F_contig11127.1493.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11127 3064..3387 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11127.1493.1

>prot_S-firma_F_contig11127.1493.1 ID=prot_S-firma_F_contig11127.1493.1|Name=mRNA_S-firma_F_contig11127.1493.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=108bp
SRPRSSYFAAVGGRISAARAAAATAGGFGAESGAVVAKAGSRKEGTRKRA
NKTWRCLYIAKPRGSAFSGDRRLLLIDAWRLENVGKVSKRVAHVDCRKER
EGIIEQA*
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mRNA from alignment at S-firma_F_contig11127:3016..3387-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11127.1493.1 ID=mRNA_S-firma_F_contig11127.1493.1|Name=mRNA_S-firma_F_contig11127.1493.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=372bp|location=Sequence derived from alignment at S-firma_F_contig11127:3016..3387- (Sphaerotrichia firma ET2_F female)
AGCAGGCCCAGATCCTCTTACTTCGCGGCGGTTGGGGGTAGAATAAGTGC
CGCGCGTGCCGCCGCTGCCACCGCCGGAGGGTTCGGAGCGGAGTCGGGAG
CTGTAGTAGCGAAAGCAGGATCACGGAAGGAAGGAACAAGGAAAAGGGCA
AACAAGACGTGGCGCTGCCTGTACATAGCCAAACCTCGCGGCAGCGCGTT
TAGTGGCGATAGAAGATTGTTGCTCATAGACGCGTGGCGGCTGGAAAATG
TTGGAAAAGTTTCAAAACGCGTCGCGCACGTCGATTGCCGAAAAGAGAGG
GAGGGCATCATAGAACAGGCCTGAGCCTACTCGGGAGGGCCCAACAAGCA
AAACCCTGTTCACGACCCCGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig11127:3016..3387-

>mRNA_S-firma_F_contig11127.1493.1 ID=mRNA_S-firma_F_contig11127.1493.1|Name=mRNA_S-firma_F_contig11127.1493.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=648bp|location=Sequence derived from alignment at S-firma_F_contig11127:3016..3387- (Sphaerotrichia firma ET2_F female)
AGCAGGCCCAGATCCTCTTACTTCGCGGCGGTTGGGGGTAGAATAAGTGC
CGCGCGTGCCGCCGCTGCCACCGCCGGAGGGTTCGGAGCGGAGTCGGGAG
CTGTAGTAGCGAAAGCAGGATCACGGAAGGAAGGAACAAGGAAAAGGGCA
AACAAGACGTGGCGCTGCCTGTACATAGCCAAACCTCGCGGCAGCGCGTT
TAGTGGCGATAGAAGATTGTTGCTCATAGACGCGTGGCGGCTGGAAAATG
TTGGAAAAGTTTCAAAACGCGTCGCGCACGTCGATTGCCGAAAAGAGAGG
GAGGGCATCATAGAACAGGCCTGAAGCAGGCCCAGATCCTCTTACTTCGC
GGCGGTTGGGGGTAGAATAAGTGCCGCGCGTGCCGCCGCTGCCACCGCCG
GAGGGTTCGGAGCGGAGTCGGGAGCTGTAGTAGCGAAAGCAGGATCACGG
AAGGAAGGAACAAGGAAAAGGGCAAACAAGACGTGGCGCTGCCTGTACAT
AGCCAAACCTCGCGGCAGCGCGTTTAGTGGCGATAGAAGATTGTTGCTCA
TAGACGCGTGGCGGCTGGAAAATGTTGGAAAAGTTTCAAAACGCGTCGCG
CACGTCGATTGCCGAAAAGAGAGGGAGGGCATCATAGAACAGGCCTGA
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