mRNA_S-firma_F_contig11125.1491.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11125.1491.1
Unique NamemRNA_S-firma_F_contig11125.1491.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: A0A8H8A039_9FUNG (Putative ubiquitin-conjugating enzyme E2 n=1 Tax=Olpidium bornovanus TaxID=278681 RepID=A0A8H8A039_9FUNG)

HSP 1 Score: 64.3 bits (155), Expect = 7.960e-12
Identity = 28/61 (45.90%), Postives = 39/61 (63.93%), Query Frame = 1 
Query:    7 ETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKGAWPVFHAAARHLTLELPQVASS 189
            ETERL +DP PGI A+P EDNLRYF V++ GP  +P++G W       R + L +  + S+
Sbjct:    1 ETERLIADPAPGISATPHEDNLRYFDVVIAGPTQSPFEGLWAGVQVGIRTVLLSIQALLSA 61
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: UPI0008682975 (ubiquitin-conjugating enzyme E2 13 n=1 Tax=Saitoella complicata (strain BCRC 22490 / CBS 7301 / JCM 7358 / NBRC 10748 / NRRL Y-17804) TaxID=698492 RepID=UPI0008682975)

HSP 1 Score: 64.3 bits (155), Expect = 2.360e-11
Identity = 28/40 (70.00%), Postives = 34/40 (85.00%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKG 123
            +ETERL +DPVPGILA+P EDNLRYF V+V GP  +PY+G
Sbjct:    9 KETERLQADPVPGILATPHEDNLRYFDVLVLGPSQSPYEG 48
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: A0A1V2L200_CYBFA (Ubiquitin-conjugating enzyme E2 N n=2 Tax=Cyberlindnera fabianii TaxID=36022 RepID=A0A1V2L200_CYBFA)

HSP 1 Score: 63.2 bits (152), Expect = 8.060e-11
Identity = 27/41 (65.85%), Postives = 33/41 (80.49%), Query Frame = 1 
Query:    1 SQETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKG 123
            +QETERL SDPVPGI A P E+NLRYF V ++GP  +PY+G
Sbjct:   18 AQETERLVSDPVPGITAEPHEENLRYFDVTIQGPDQSPYEG 58
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: Q6FST1_CANGA (UBC core domain-containing protein n=2 Tax=Candida glabrata TaxID=5478 RepID=Q6FST1_CANGA)

HSP 1 Score: 62.8 bits (151), Expect = 9.530e-11
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPY-KGAWPVFHAAARHLTLELPQV 180
            +ETERL SDPVPGI A P EDNLRYF V +EGP  +PY KG + +         +E P+V
Sbjct:   10 KETERLVSDPVPGITAEPHEDNLRYFDVTIEGPSQSPYEKGIFKLELYLPEDYPMEAPKV 69
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: M9MFE1_PSEA3 (Transcription factor n=1 Tax=Pseudozyma antarctica (strain T-34) TaxID=1151754 RepID=M9MFE1_PSEA3)

HSP 1 Score: 64.3 bits (155), Expect = 9.840e-11
Identity = 34/69 (49.28%), Postives = 43/69 (62.32%), Query Frame = 1 
Query:    1 SQETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKGAWPVFHAAARHLTLELPQVASSTWSSSC 207
            +QETERL +DP PGI A+P EDNLRYF V++ GP  +P++   P   A+         Q ASS  SSSC
Sbjct:   33 TQETERLIADPAPGISATPHEDNLRYFDVVISGPTQSPFEVCDPCIPASLHPCN----QAASSVSSSSC 97
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: A0A1D2VLK8_9ASCO (Ubiquitin-conjugating enzyme n=1 Tax=Ascoidea rubescens DSM 1968 TaxID=1344418 RepID=A0A1D2VLK8_9ASCO)

HSP 1 Score: 62.8 bits (151), Expect = 9.920e-11
Identity = 27/40 (67.50%), Postives = 33/40 (82.50%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKG 123
            +ETERL SDPVPGI A P +DNLRYF V++EGP  +PY+G
Sbjct:    9 KETERLVSDPVPGISAIPHDDNLRYFDVLIEGPTQSPYEG 48
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: A0A8J2WSD8_9STRA (Hypothetical protein n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A8J2WSD8_9STRA)

HSP 1 Score: 62.4 bits (150), Expect = 1.400e-10
Identity = 25/39 (64.10%), Postives = 34/39 (87.18%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYK 120
            +ET+RL+ +PVPGI A PFEDN+RYF+VI+ GP D+PY+
Sbjct:    9 KETQRLTQEPVPGITAIPFEDNMRYFNVIISGPDDSPYE 47
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: A0A0A8L2T3_9SACH (WGS project CCBQ000000000 data, contig 00009 n=1 Tax=Kluyveromyces dobzhanskii CBS 2104 TaxID=1427455 RepID=A0A0A8L2T3_9SACH)

HSP 1 Score: 62.4 bits (150), Expect = 1.510e-10
Identity = 27/40 (67.50%), Postives = 32/40 (80.00%), Query Frame = 1 
Query:    1 SQETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYK 120
            +QETERL SDPVPGI A P +DNLRYF V +EGP  +PY+
Sbjct:    6 TQETERLVSDPVPGITAEPHDDNLRYFQVTIEGPQQSPYE 45
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: I0YRY8_COCSC (Binding protein n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YRY8_COCSC)

HSP 1 Score: 62.0 bits (149), Expect = 1.620e-10
Identity = 31/53 (58.49%), Postives = 38/53 (71.70%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKGAWPVFHAAARHLT 162
            +ET+RL S+P PGI ASP EDNLRYF+VI+ GP +TPY+G    F    R LT
Sbjct:   13 KETQRLMSEPAPGISASPCEDNLRYFNVIILGPHNTPYEGMQQ-FSCKVRFLT 64
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BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Match: H2AMT0_KAZAF (UBC core domain-containing protein n=1 Tax=Kazachstania africana (strain ATCC 22294 / BCRC 22015 / CBS 2517 / CECT 1963 / NBRC 1671 / NRRL Y-8276) TaxID=1071382 RepID=H2AMT0_KAZAF)

HSP 1 Score: 62.0 bits (149), Expect = 1.820e-10
Identity = 32/60 (53.33%), Postives = 39/60 (65.00%), Query Frame = 1 
Query:    4 QETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPY-KGAWPVFHAAARHLTLELPQV 180
            QETERL SDPVPGI A P +DNLRYF V +EGP  +PY KG + +         +E P+V
Sbjct:    6 QETERLISDPVPGITAEPHDDNLRYFKVSIEGPEQSPYEKGIFQLELYLPDDYPMEAPKV 65
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11125.1491.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A8H8A039_9FUNG7.960e-1245.90Putative ubiquitin-conjugating enzyme E2 n=1 Tax=O... [more]
UPI00086829752.360e-1170.00ubiquitin-conjugating enzyme E2 13 n=1 Tax=Saitoel... [more]
A0A1V2L200_CYBFA8.060e-1165.85Ubiquitin-conjugating enzyme E2 N n=2 Tax=Cyberlin... [more]
Q6FST1_CANGA9.530e-1153.33UBC core domain-containing protein n=2 Tax=Candida... [more]
M9MFE1_PSEA39.840e-1149.28Transcription factor n=1 Tax=Pseudozyma antarctica... [more]
A0A1D2VLK8_9ASCO9.920e-1167.50Ubiquitin-conjugating enzyme n=1 Tax=Ascoidea rube... [more]
A0A8J2WSD8_9STRA1.400e-1064.10Hypothetical protein n=1 Tax=Pelagomonas calceolat... [more]
A0A0A8L2T3_9SACH1.510e-1067.50WGS project CCBQ000000000 data, contig 00009 n=1 T... [more]
I0YRY8_COCSC1.620e-1058.49Binding protein n=1 Tax=Coccomyxa subellipsoidea (... [more]
H2AMT0_KAZAF1.820e-1053.33UBC core domain-containing protein n=1 Tax=Kazachs... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11125contigS-firma_F_contig11125:4635..4841 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4956.XP_002495450.1
PFAMsUQ_con
Max annot lvl4751|Fungi
KEGG koko:K10580
KEGG Pathwayko04120,ko04624,map04120,map04624
GOsGO:0000209,GO:0003674,GO:0003824,GO:0004842,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0006139,GO:0006259,GO:0006281,GO:0006301,GO:0006464,GO:0006513,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008104,GO:0008150,GO:0008152,GO:0009314,GO:0009411,GO:0009416,GO:0009628,GO:0009987,GO:0010992,GO:0010994,GO:0016043,GO:0016567,GO:0016740,GO:0019538,GO:0019725,GO:0019787,GO:0019899,GO:0022607,GO:0031371,GO:0031625,GO:0032446,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034613,GO:0034622,GO:0034641,GO:0034644,GO:0036211,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043412,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044389,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051179,GO:0051258,GO:0051641,GO:0051716,GO:0061630,GO:0061631,GO:0061650,GO:0061659,GO:0065003,GO:0065007,GO:0065008,GO:0070534,GO:0070647,GO:0070727,GO:0070914,GO:0071214,GO:0071478,GO:0071482,GO:0071704,GO:0071840,GO:0072665,GO:0090304,GO:0104004,GO:0120113,GO:0140096,GO:1901360,GO:1901564,GO:1902494,GO:1990234
Evalue8.17e-12
EggNOG OGsCOG5078@1|root,KOG0417@2759|Eukaryota,39ZUE@33154|Opisthokonta,3P1WC@4751|Fungi,3QQCZ@4890|Ascomycota,3RU8A@4891|Saccharomycetes,3S0D9@4893|Saccharomycetaceae
EC2.3.2.23
DescriptionBelongs to the ubiquitin-conjugating enzyme family
COG categoryO
BRITEko00000,ko00001,ko01000,ko03400,ko04121
Hectar predicted targeting categoryother localisation
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815662.3824663-CDS-S-firma_F_contig11125:4634..48411622815662.3824663-CDS-S-firma_F_contig11125:4634..4841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11125 4635..4841 +
1696949486.7701015-CDS-S-firma_F_contig11125:4634..48411696949486.7701015-CDS-S-firma_F_contig11125:4634..4841Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11125 4635..4841 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11125.1491.1prot_S-firma_F_contig11125.1491.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11125 4635..4841 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11125.1491.1

>prot_S-firma_F_contig11125.1491.1 ID=prot_S-firma_F_contig11125.1491.1|Name=mRNA_S-firma_F_contig11125.1491.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
SQETERLSSDPVPGILASPFEDNLRYFSVIVEGPPDTPYKGAWPVFHAAA
RHLTLELPQVASSTWSSSC
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mRNA from alignment at S-firma_F_contig11125:4635..4841+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11125.1491.1 ID=mRNA_S-firma_F_contig11125.1491.1|Name=mRNA_S-firma_F_contig11125.1491.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=207bp|location=Sequence derived from alignment at S-firma_F_contig11125:4635..4841+ (Sphaerotrichia firma ET2_F female)
TCTCAGGAAACGGAGCGCCTGTCGTCGGACCCGGTGCCAGGCATTTTGGC
GTCCCCGTTCGAGGACAACCTGCGGTACTTTTCTGTGATTGTTGAGGGGC
CGCCGGACACACCGTACAAGGGTGCGTGGCCTGTGTTCCATGCTGCTGCT
CGCCACTTAACCCTGGAACTCCCTCAGGTGGCGTCTTCCACATGGAGCTC
TTCCTGC
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Coding sequence (CDS) from alignment at S-firma_F_contig11125:4635..4841+

>mRNA_S-firma_F_contig11125.1491.1 ID=mRNA_S-firma_F_contig11125.1491.1|Name=mRNA_S-firma_F_contig11125.1491.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig11125:4635..4841+ (Sphaerotrichia firma ET2_F female)
TCTCAGGAAACGGAGCGCCTGTCGTCGGACCCGGTGCCAGGCATTTTGGC
GTCCCCGTTCGAGGACAACCTGCGGTACTTTTCTGTGATTGTTGAGGGGC
CGCCGGACACACCGTACAAGGGTGCGTGGCCTGTGTTCCATGCTGCTGCT
CGCCACTTAACCCTGGAACTCCCTCAGGTGGCGTCTTCCACATGGAGCTC
TTCCTGCTCTCAGGAAACGGAGCGCCTGTCGTCGGACCCGGTGCCAGGCA
TTTTGGCGTCCCCGTTCGAGGACAACCTGCGGTACTTTTCTGTGATTGTT
GAGGGGCCGCCGGACACACCGTACAAGGGTGCGTGGCCTGTGTTCCATGC
TGCTGCTCGCCACTTAACCCTGGAACTCCCTCAGGTGGCGTCTTCCACAT
GGAGCTCTTCCTGC
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