mRNA_S-firma_F_contig1112.1482.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1112.1482.1
Unique NamemRNA_S-firma_F_contig1112.1482.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1112.1482.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1112contigS-firma_F_contig1112:8752..9531 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size781
Cds size780
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815661.747991-CDS-S-firma_F_contig1112:8751..95311622815661.747991-CDS-S-firma_F_contig1112:8751..9531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 8752..9531 +
1696949486.4105215-CDS-S-firma_F_contig1112:8751..95311696949486.4105215-CDS-S-firma_F_contig1112:8751..9531Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1112 8752..9531 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1112.1482.1prot_S-firma_F_contig1112.1482.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1112 8752..9531 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1112.1482.1

>prot_S-firma_F_contig1112.1482.1 ID=prot_S-firma_F_contig1112.1482.1|Name=mRNA_S-firma_F_contig1112.1482.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=260bp
QQQQQSENDFQQTWDGGDEEVASSSASGAAVGAGAGSAVWSRLGPRAAGN
GHGSNNNNASSPAFVHGRAVRRQNIGGGNQEWSDWAAQSMNGVPANAAPP
TVLAAALRVAAGAATAVAGNGDGYNNGGFSNGGFSNGGFSNGGFNNGEED
LGLVSSHDNTAGHQQQEDDGGGDQASAYPANTAGAWSGAPGSRGAGRGGR
FGRGGGRNQTWVREGLRETGRGRGAAGRGRGEPAAASAMGTAAEATPAVA
ATPAAGGRGA
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mRNA from alignment at S-firma_F_contig1112:8752..9531+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1112.1482.1 ID=mRNA_S-firma_F_contig1112.1482.1|Name=mRNA_S-firma_F_contig1112.1482.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=780bp|location=Sequence derived from alignment at S-firma_F_contig1112:8752..9531+ (Sphaerotrichia firma ET2_F female)
CAGCAGCAGCAGCAGTCGGAAAACGATTTCCAACAGACATGGGACGGCGG
GGACGAAGAGGTCGCCTCCTCTAGTGCCTCAGGCGCGGCGGTGGGGGCGG
GGGCGGGGTCTGCTGTCTGGAGTCGTCTTGGCCCGCGCGCCGCGGGTAAC
GGCCACGGCAGCAACAACAACAATGCCAGCAGCCCTGCGTTTGTTCATGG
GCGTGCCGTCCGCCGCCAGAACATCGGCGGCGGCAACCAGGAGTGGTCTG
ACTGGGCGGCCCAGTCCATGAACGGAGTCCCGGCTAATGCGGCCCCCCCG
ACGGTCCTGGCCGCCGCCCTGCGGGTCGCGGCCGGCGCGGCGACGGCTGT
TGCCGGGAACGGCGACGGCTACAACAACGGCGGTTTCAGCAACGGCGGTT
TCAGCAACGGCGGTTTCAGCAACGGCGGTTTCAACAATGGCGAGGAAGAC
CTGGGCCTGGTGTCGAGCCATGACAACACCGCCGGGCATCAGCAACAGGA
AGACGACGGCGGCGGCGACCAGGCATCAGCATACCCCGCGAACACGGCGG
GCGCGTGGTCCGGCGCCCCCGGGAGCAGGGGGGCCGGCAGAGGGGGACGT
TTCGGGCGCGGTGGCGGCCGGAATCAAACCTGGGTCCGCGAGGGGCTGAG
GGAGACCGGGAGAGGAAGAGGAGCGGCGGGGCGGGGACGAGGGGAGCCGG
CCGCCGCGTCTGCGATGGGGACGGCGGCGGAGGCAACGCCAGCGGTTGCC
GCAACACCGGCCGCTGGTGGACGAGGGGCC
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Coding sequence (CDS) from alignment at S-firma_F_contig1112:8752..9531+

>mRNA_S-firma_F_contig1112.1482.1 ID=mRNA_S-firma_F_contig1112.1482.1|Name=mRNA_S-firma_F_contig1112.1482.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1560bp|location=Sequence derived from alignment at S-firma_F_contig1112:8752..9531+ (Sphaerotrichia firma ET2_F female)
CAGCAGCAGCAGCAGTCGGAAAACGATTTCCAACAGACATGGGACGGCGG
GGACGAAGAGGTCGCCTCCTCTAGTGCCTCAGGCGCGGCGGTGGGGGCGG
GGGCGGGGTCTGCTGTCTGGAGTCGTCTTGGCCCGCGCGCCGCGGGTAAC
GGCCACGGCAGCAACAACAACAATGCCAGCAGCCCTGCGTTTGTTCATGG
GCGTGCCGTCCGCCGCCAGAACATCGGCGGCGGCAACCAGGAGTGGTCTG
ACTGGGCGGCCCAGTCCATGAACGGAGTCCCGGCTAATGCGGCCCCCCCG
ACGGTCCTGGCCGCCGCCCTGCGGGTCGCGGCCGGCGCGGCGACGGCTGT
TGCCGGGAACGGCGACGGCTACAACAACGGCGGTTTCAGCAACGGCGGTT
TCAGCAACGGCGGTTTCAGCAACGGCGGTTTCAACAATGGCGAGGAAGAC
CTGGGCCTGGTGTCGAGCCATGACAACACCGCCGGGCATCAGCAACAGGA
AGACGACGGCGGCGGCGACCAGGCATCAGCATACCCCGCGAACACGGCGG
GCGCGTGGTCCGGCGCCCCCGGGAGCAGGGGGGCCGGCAGAGGGGGACGT
TTCGGGCGCGGTGGCGGCCGGAATCAAACCTGGGTCCGCGAGGGGCTGAG
GGAGACCGGGAGAGGAAGAGGAGCGGCGGGGCGGGGACGAGGGGAGCCGG
CCGCCGCGTCTGCGATGGGGACGGCGGCGGAGGCAACGCCAGCGGTTGCC
GCAACACCGGCCGCTGGTGGACGAGGGGCCCAGCAGCAGCAGCAGTCGGA
AAACGATTTCCAACAGACATGGGACGGCGGGGACGAAGAGGTCGCCTCCT
CTAGTGCCTCAGGCGCGGCGGTGGGGGCGGGGGCGGGGTCTGCTGTCTGG
AGTCGTCTTGGCCCGCGCGCCGCGGGTAACGGCCACGGCAGCAACAACAA
CAATGCCAGCAGCCCTGCGTTTGTTCATGGGCGTGCCGTCCGCCGCCAGA
ACATCGGCGGCGGCAACCAGGAGTGGTCTGACTGGGCGGCCCAGTCCATG
AACGGAGTCCCGGCTAATGCGGCCCCCCCGACGGTCCTGGCCGCCGCCCT
GCGGGTCGCGGCCGGCGCGGCGACGGCTGTTGCCGGGAACGGCGACGGCT
ACAACAACGGCGGTTTCAGCAACGGCGGTTTCAGCAACGGCGGTTTCAGC
AACGGCGGTTTCAACAATGGCGAGGAAGACCTGGGCCTGGTGTCGAGCCA
TGACAACACCGCCGGGCATCAGCAACAGGAAGACGACGGCGGCGGCGACC
AGGCATCAGCATACCCCGCGAACACGGCGGGCGCGTGGTCCGGCGCCCCC
GGGAGCAGGGGGGCCGGCAGAGGGGGACGTTTCGGGCGCGGTGGCGGCCG
GAATCAAACCTGGGTCCGCGAGGGGCTGAGGGAGACCGGGAGAGGAAGAG
GAGCGGCGGGGCGGGGACGAGGGGAGCCGGCCGCCGCGTCTGCGATGGGG
ACGGCGGCGGAGGCAACGCCAGCGGTTGCCGCAACACCGGCCGCTGGTGG
ACGAGGGGCC
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