mRNA_S-firma_F_contig11101.1464.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig11101.1464.1
Unique NamemRNA_S-firma_F_contig11101.1464.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig11101.1464.1 vs. uniprot
Match: A0A6H5L487_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L487_9PHAE)

HSP 1 Score: 87.0 bits (214), Expect = 3.990e-16
Identity = 61/111 (54.95%), Postives = 68/111 (61.26%), Query Frame = 3 
Query:  318 RWHTSSFSRPSXXXXXXXXXXXXDFSLNDIERELKRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSSPGLEEGDAFMEEQMALRKTLLKAHVLVYNQGQPEEGVYTLFVQ 650
            R HTSSFSRPS            DFS ND+EREL R XXXXXXX                       S GL+EG+AFMEEQM LRK LLKA+V+V+NQG+ EEGVYTLFVQ
Sbjct:   43 RQHTSSFSRPSSADSGSGSG---DFSFNDLERELSRRXXXXXXXTGGPAASSRPPPAANATGAVY--SRGLDEGEAFMEEQMVLRKKLLKAYVVVFNQGELEEGVYTLFVQ 148
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig11101.1464.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L487_9PHAE3.990e-1654.95Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig11101contigS-firma_F_contig11101:2230..4631 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorychloroplast
Exons4
Model size954
Cds size477
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig11101.1464.1prot_S-firma_F_contig11101.1464.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig11101 2412..4296 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.118916-UTR-S-firma_F_contig11101:2229..24111622815660.118916-UTR-S-firma_F_contig11101:2229..2411Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 2230..2411 +
1696949485.355684-UTR-S-firma_F_contig11101:2229..24111696949485.355684-UTR-S-firma_F_contig11101:2229..2411Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 2230..2411 +
1622815660.1534793-UTR-S-firma_F_contig11101:4296..42981622815660.1534793-UTR-S-firma_F_contig11101:4296..4298Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4297..4298 +
1696949485.3847408-UTR-S-firma_F_contig11101:4296..42981696949485.3847408-UTR-S-firma_F_contig11101:4296..4298Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4297..4298 +
1622815660.163033-UTR-S-firma_F_contig11101:4308..44081622815660.163033-UTR-S-firma_F_contig11101:4308..4408Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4309..4408 +
1696949485.3948946-UTR-S-firma_F_contig11101:4308..44081696949485.3948946-UTR-S-firma_F_contig11101:4308..4408Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4309..4408 +
1622815660.1774516-UTR-S-firma_F_contig11101:4438..46311622815660.1774516-UTR-S-firma_F_contig11101:4438..4631Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4439..4631 +
1696949485.405249-UTR-S-firma_F_contig11101:4438..46311696949485.405249-UTR-S-firma_F_contig11101:4438..4631Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig11101 4439..4631 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815660.1315725-CDS-S-firma_F_contig11101:2411..27921622815660.1315725-CDS-S-firma_F_contig11101:2411..2792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11101 2412..2792 +
1696949485.36414-CDS-S-firma_F_contig11101:2411..27921696949485.36414-CDS-S-firma_F_contig11101:2411..2792Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11101 2412..2792 +
1622815660.14357-CDS-S-firma_F_contig11101:4200..42961622815660.14357-CDS-S-firma_F_contig11101:4200..4296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11101 4201..4296 +
1696949485.3725011-CDS-S-firma_F_contig11101:4200..42961696949485.3725011-CDS-S-firma_F_contig11101:4200..4296Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig11101 4201..4296 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig11101.1464.1

>prot_S-firma_F_contig11101.1464.1 ID=prot_S-firma_F_contig11101.1464.1|Name=mRNA_S-firma_F_contig11101.1464.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=159bp
MRVATCCCCVLTSTLHVASTSLLRVSAFTPPPPSLFSSSGVSSPPRWHTS
SFSRPSSGDSSSNSNSSSDFSLNDIERELKRRRAEEAAGAKREAGAAADR
AAAAAAAVAAASSPGLEEGDAFMEEQMALRKTLLKAHVLVYNQGQPEEGV
YTLFVQVM*
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mRNA from alignment at S-firma_F_contig11101:2230..4631+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig11101.1464.1 ID=mRNA_S-firma_F_contig11101.1464.1|Name=mRNA_S-firma_F_contig11101.1464.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2402bp|location=Sequence derived from alignment at S-firma_F_contig11101:2230..4631+ (Sphaerotrichia firma ET2_F female)
CTTGTCTTCTCCTCTCTGTCTCTCCTCCTTGCCAGCGGCTTCGGCATTGC
TGCGCACGCGTGCTCGCAAGCTCGTGGACGAAGGTACTCGCTGGTAGCCG
GAAGCGGGAACAGGGCACCAAAAATCGACCGTCGAGCGGGCGGATTCGCT
GGTCCTGTCTCTGGTGTCGACAAACGAAAAACATGAGGGTCGCCACCTGC
TGCTGCTGTGTCTTGACCTCGACGCTGCATGTGGCGTCCACGTCCCTCCT
GCGGGTCTCCGCCTTCACCCCTCCCCCTCCCTCGCTCTTCAGCTCCTCCG
GCGTTTCCAGCCCCCCTCGGTGGCACACCTCATCGTTTTCCAGGCCATCA
TCGGGCGATAGCAGCAGCAACAGCAACAGCAGTAGTGACTTCTCGTTGAA
CGATATCGAGCGTGAGCTCAAGCGGAGACGGGCGGAGGAGGCAGCCGGAG
CTAAACGGGAGGCGGGGGCGGCAGCGGACAGGGCAGCGGCGGCGGCGGCG
GCGGTTGCGGCCGCGTCCTCTCCAGGCTTGGAAGAAGGAGATGCCTTCAT
GGAGGAGCAGATGGTGAGGGGCTGGGGAGAAAGAGAAAGAGACATGTTTC
CAATGAATAATGAGATACGCTCTCTTTCGTGTGGGGTGCGGTGGGAACAC
GGACTGCTACAAGTACCGCTGTGCGCACCATTGCACCATGCACCCTTCAT
TTGTGCGTGCCGCTGACTTGCGGGACGATTGGATTGAAGACTGCATGTGT
TCTACTCTGCATCCGCCATCTCTCTCTCTCTCTCTCTCTCCAGATTCCGA
GGCATCGCGCGAAAGGAAGCCTGGCTTCTGGTAGGCTTTGTTTGTCGCTG
CTCCAAAGCTCCAAAGCTCTCATGAACTCATGAACATGTTGTGTCGTGTG
GTTGAAGTCTGTCTCTCTTCGTGCCTCTACAAATTAGCTTGTTAGCGGCC
AAAAGACTGGCTGCTGTGTTACAGCCGTGTGTGTGTGTTCTTCCCATCTA
TTTTGGTGACAGCAGTCCCTCCGATCAAGGCGAGACGTGTACTTACACTT
TGCAGTGTATTCAAAGGACTAGACTACATACACCCTGGTAGGTTACAGAG
TAGGTGACGACAGGTAAAAGAGTAAAAAAGCAGTATCGTGAGTAATGATC
TAGGATTGCTGTAGTTTTTTCTAGCAGAGCTGTTATTGTAGCTCCCCGTC
CTCTTTGGTTCTTGCAGGGGGGGGCGTGTCGTGGTACTGTATGATATCAT
AGGAGGTTTTTTATTTTGTCGCACTCCACTTCCTAACCCACCTCACACCT
CACACCCGAACTGCGAACTGCCTTGTGCGTCGCAACCAGGTATTATATCG
ATAGACTATTTTGTCGATTGTGGAGAAGTCGACCCTCCTGTTTCTTCGTG
TTTCGTTCTTCCGTCCGGTGTCCGGTGTCCGGTGTCTGCGAGTGTTCGAC
GACGACGGCTGCTGCTACTGCTGTACGGGTTTTGAACCGTACCGGGTGTC
TGTCCGTATCGCTCCCGCTCCATTTGCGTAAAAAAGATATCCGCACCACC
TACAGGGTTCTCTTCAACACACCAATCCAATTCCAGTCTGCGGCATCGTC
GATAACTCAAGACCGCTGCATCCTTTTTTGAAAGACAAAACACTGGAATC
ACGATTACAGAGCTGCTGCTGTACGATAATTTTACACAGCTAATGTTCTG
GCTGTTATGTACTTCATATGCATGGTAGGCGGGGCCCGGCATAGTATAGC
ATAGTACAGGGGGGGGGTGTTCCTTTTAAAGGTCTACTGTACCAATACGG
CTCTCCGAACGCCTACCCTACGGCTGTGTGCATGGCTACAGCCTACCTTG
AACTCGGCTCTCCAACCGTCTACCCTACGGCTGTGTGCATGGCTACAGTC
TACCTTTTACTTCGGCTCTCCAACCGTCTACCCTACGGCTGTGTGCATCG
CTGCCGCTCTGACCGCTCCAGGCGCTTCGGAAGACGTTGCTGAAGGCGCA
CGTGCTCGTTTACAATCAGGGACAGCCCGAGGAAGGGGTGTACACCCTCT
TCGTACAGGTAATGTAATAGCTAGACTAGACTAGACTAGACTAGACTAGA
CCATGTGATGTGCGGACGTTTCTCGGGCTAGTCGGCCAATCAATCGTCGA
TGTCACGGAGAGGAACCTGCTTGTGTGTGTGTGTGTGTGTGTGTGTGTGT
GTGTGTGTATGTGTGTGTTCCCATCTACATCTATTTTGGTGACAGCAGTC
CCTCTAGTCAAGGCGAGACGTATACTTACTTCACTTTCTGTGGAAGGGTT
TAGCCTCCTACAGGTTGTTACAAGCGCAGTTCCCTTTGGTGAGGTGTTTG
ATGGAGAGGATCCACCAGGGTTGTGTAGGGGCGAGCCAGCTGGGCTGTAC
TC
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Coding sequence (CDS) from alignment at S-firma_F_contig11101:2230..4631+

>mRNA_S-firma_F_contig11101.1464.1 ID=mRNA_S-firma_F_contig11101.1464.1|Name=mRNA_S-firma_F_contig11101.1464.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=954bp|location=Sequence derived from alignment at S-firma_F_contig11101:2230..4631+ (Sphaerotrichia firma ET2_F female)
ATGAGGGTCGCCACCTGCTGCTGCTGTGTCTTGACCTCGACGCTGCATGT
GGCGTCCACGTCCCTCCTGCGGGTCTCCGCCTTCACCCCTCCCCCTCCCT
CGCTCTTCAGCTCCTCCGGCGTTTCCAGCCCCCCTCGGTGGCACACCTCA
TCGTTTTCCAGGCCATCATCGGGCGATAGCAGCAGCAACAGCAACAGCAG
TAGTGACTTCTCGTTGAACGATATCGAGCGTGAGCTCAAGCGGAGACGGG
CGGAGGAGGCAGCCGGAGCTAAACGGGAGGCGGGGGCGGCAGCGGACAGG
GCAGCGGCGGCGGCGGCGGCGGTTGCGGCCGCGTCCTCTCCAGGCTTGGA
AGAAGGAGATGCCTTCATGGAGGAGCAGATGATGAGGGTCGCCACCTGCT
GCTGCTGTGTCTTGACCTCGACGCTGCATGTGGCGTCCACGTCCCTCCTG
CGGGTCTCCGCCTTCACCCCTCCCCCTCCCTCGCTCTTCAGCTCCTCCGG
CGTTTCCAGCCCCCCTCGGTGGCACACCTCATCGTTTTCCAGGCCATCAT
CGGGCGATAGCAGCAGCAACAGCAACAGCAGTAGTGACTTCTCGTTGAAC
GATATCGAGCGTGAGCTCAAGCGGAGACGGGCGGAGGAGGCAGCCGGAGC
TAAACGGGAGGCGGGGGCGGCAGCGGACAGGGCAGCGGCGGCGGCGGCGG
CGGTTGCGGCCGCGTCCTCTCCAGGCTTGGAAGAAGGAGATGCCTTCATG
GAGGAGCAGATGGCGCTTCGGAAGACGTTGCTGAAGGCGCACGTGCTCGT
TTACAATCAGGGACAGCCCGAGGAAGGGGTGTACACCCTCTTCGTACAGG
TAATGTAAGCGCTTCGGAAGACGTTGCTGAAGGCGCACGTGCTCGTTTAC
AATCAGGGACAGCCCGAGGAAGGGGTGTACACCCTCTTCGTACAGGTAAT
GTAA
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