mRNA_S-firma_F_contig10076.146.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10076.146.1
Unique NamemRNA_S-firma_F_contig10076.146.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10076.146.1 vs. uniprot
Match: A0A7S2CD11_9STRA (Hypothetical protein (Fragment) n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2CD11_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 5.970e-9
Identity = 28/58 (48.28%), Postives = 43/58 (74.14%), Query Frame = 1 
Query:    1 EFLKEEGRTAEELFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYHLMLAAA 174
            +FL+ EG ++ E ++  KDA E+NYTALFEEH++H FV ++L +M Y+ F+ +M  AA
Sbjct:   96 QFLEGEGCSSAEFYAQCKDAIEDNYTALFEEHQHHWFVDALLASMSYEHFFEMMTKAA 153
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BLAST of mRNA_S-firma_F_contig10076.146.1 vs. uniprot
Match: A0A7S4A6K5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A6K5_9STRA)

HSP 1 Score: 53.5 bits (127), Expect = 2.880e-7
Identity = 27/57 (47.37%), Postives = 39/57 (68.42%), Query Frame = 1 
Query:    4 FLKEEGRTAEELFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYHLMLAAA 174
            FL E+  + +E  + ++DA E+ Y ALFEEHE+HG+V S   A+ Y+ FY  M+AAA
Sbjct:   86 FLSEKAFSLQEFQAQLRDAVEDRYCALFEEHEHHGWVDSCFAAVSYEHFYRRMVAAA 142
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BLAST of mRNA_S-firma_F_contig10076.146.1 vs. uniprot
Match: A0A7S3JYZ2_9STRA (Hypothetical protein (Fragment) n=1 Tax=Aureoumbra lagunensis TaxID=44058 RepID=A0A7S3JYZ2_9STRA)

HSP 1 Score: 49.7 bits (117), Expect = 1.170e-5
Identity = 23/54 (42.59%), Postives = 36/54 (66.67%), Query Frame = 1 
Query:    1 EFLKEEGRTAEELFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYHLM 162
            +FL  +  +  +LF  M+DAK + YTALFEEH++H +V S+L  + ++ F  LM
Sbjct:   88 DFLHHQSLSMSQLFEQMEDAKLDRYTALFEEHQHHAWVDSILAVLSFEYFVQLM 141
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BLAST of mRNA_S-firma_F_contig10076.146.1 vs. uniprot
Match: A0A7S2SCS0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCS0_9STRA)

HSP 1 Score: 48.5 bits (114), Expect = 2.800e-5
Identity = 23/58 (39.66%), Postives = 38/58 (65.52%), Query Frame = 1 
Query:    1 EFLKEEGRTAEELFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSFYHLMLAAA 174
            +FL+ +G ++ + FS  +DA E+ +  LFEEH +H FV ++L +M Y+ F+  M  AA
Sbjct:   89 DFLRTQGCSSADFFSQCRDALEDRFVPLFEEHHHHWFVDALLSSMSYEHFFSSMCEAA 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10076.146.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
A0A7S2CD11_9STRA5.970e-948.28Hypothetical protein (Fragment) n=1 Tax=Florenciel... [more]
A0A7S4A6K5_9STRA2.880e-747.37Hypothetical protein (Fragment) n=1 Tax=Pelagomona... [more]
A0A7S3JYZ2_9STRA1.170e-542.59Hypothetical protein (Fragment) n=1 Tax=Aureoumbra... [more]
A0A7S2SCS0_9STRA2.800e-539.66Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10076contigS-firma_F_contig10076:2533..3248 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog325452.fgenesh_scip_prom.46568.1504
PFAMsARL2_Bind_BART
Max annot lvl4776|Peronosporales
Evalue1.93e-09
EggNOG OGs2C07X@1|root,2SBZW@2759|Eukaryota,3QFQF@4776|Peronosporales
DescriptionThe ARF-like 2 binding protein BART
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size192
Cds size192
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.5469413-CDS-S-firma_F_contig10076:2532..25861622815532.5469413-CDS-S-firma_F_contig10076:2532..2586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10076 2533..2586 +
1696949394.4592502-CDS-S-firma_F_contig10076:2532..25861696949394.4592502-CDS-S-firma_F_contig10076:2532..2586Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10076 2533..2586 +
1622815532.5612552-CDS-S-firma_F_contig10076:3110..32481622815532.5612552-CDS-S-firma_F_contig10076:3110..3248Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10076 3111..3248 +
1696949394.4787736-CDS-S-firma_F_contig10076:3110..32481696949394.4787736-CDS-S-firma_F_contig10076:3110..3248Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10076 3111..3248 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10076.146.1prot_S-firma_F_contig10076.146.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10076 2533..3248 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10076.146.1

>prot_S-firma_F_contig10076.146.1 ID=prot_S-firma_F_contig10076.146.1|Name=mRNA_S-firma_F_contig10076.146.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=64bp
EFLKEEGRTAEELFSDMKDAKENNYTALFEEHEYHGFVQSVLDAMEYKSF
YHLMLAAAATTARE
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mRNA from alignment at S-firma_F_contig10076:2533..3248+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10076.146.1 ID=mRNA_S-firma_F_contig10076.146.1|Name=mRNA_S-firma_F_contig10076.146.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=716bp|location=Sequence derived from alignment at S-firma_F_contig10076:2533..3248+ (Sphaerotrichia firma ET2_F female)
GAGTTTTTGAAAGAGGAGGGACGTACGGCCGAGGAACTGTTCTCTGACAT
GAAGGTACACCCCGTACTTTGTAGCTCTGCCCTCCTTTGTCATATGGAAA
ATGCAAACATACTTGGTGCGCTCGCCACTTGTGGTACGGTACCAAGGAGG
CGTCGGCATCTCGCTTGATTGCCGTATTGGTTAGTATTTGCTCTGACCGT
ACTGGGCGTCCGGTTTCGCTGCAAGATATGAGCTCCGAATGCTTGAAGTT
TTCAGCAGTGAGTGGAGATGCAGTTTGGCCTCAAACACGCGCATGGTTGC
ATGCAGATCGTGAATCGACGCAAATAGCCAGGACCCTGGGTAAATCCGCA
GTTGCCCGCCCAGTCCAGGCGTTTGCTCTGAAGAAGGGCCTCCTCAGCAA
AGAGCAGCTGGGATCTGTGTACCCGTTACACGATGGGTGAAATAGCAACG
AACACCCTTCTCGGCACGACTCGCGCTGACCTCTTACTCGGCCAAGACGA
AATTGCAGCACCAAGTCATTGGGCCATGGAGAATCGTAGTGTTGCCGCTC
GTTGCCGATGTCGCCTCTTTCTTTGCAGGACGCGAAAGAGAACAATTACA
CTGCCCTCTTTGAAGAGCACGAATACCACGGGTTCGTGCAGAGCGTCCTC
GATGCGATGGAGTACAAATCTTTCTACCACCTCATGCTGGCAGCGGCCGC
TACAACTGCGCGAGAA
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Coding sequence (CDS) from alignment at S-firma_F_contig10076:2533..3248+

>mRNA_S-firma_F_contig10076.146.1 ID=mRNA_S-firma_F_contig10076.146.1|Name=mRNA_S-firma_F_contig10076.146.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=384bp|location=Sequence derived from alignment at S-firma_F_contig10076:2533..3248+ (Sphaerotrichia firma ET2_F female)
GAGTTTTTGAAAGAGGAGGGACGTACGGCCGAGGAACTGTTCTCTGACAT
GAAGGAGTTTTTGAAAGAGGAGGGACGTACGGCCGAGGAACTGTTCTCTG
ACATGAAGGACGCGAAAGAGAACAATTACACTGCCCTCTTTGAAGAGCAC
GAATACCACGGGTTCGTGCAGAGCGTCCTCGATGCGATGGAGTACAAATC
TTTCTACCACCTCATGCTGGCAGCGGCCGCTACAACTGCGCGAGAAGACG
CGAAAGAGAACAATTACACTGCCCTCTTTGAAGAGCACGAATACCACGGG
TTCGTGCAGAGCGTCCTCGATGCGATGGAGTACAAATCTTTCTACCACCT
CATGCTGGCAGCGGCCGCTACAACTGCGCGAGAA
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