mRNA_S-firma_F_contig10075.144.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10075.144.1
Unique NamemRNA_S-firma_F_contig10075.144.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10075.144.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10075contigS-firma_F_contig10075:1290..2950 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size396
Cds size393
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815532.422051-CDS-S-firma_F_contig10075:1289..16041622815532.422051-CDS-S-firma_F_contig10075:1289..1604Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 1290..1604 +
1696949394.3756695-CDS-S-firma_F_contig10075:1289..16041696949394.3756695-CDS-S-firma_F_contig10075:1289..1604Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 1290..1604 +
1622815532.4354286-CDS-S-firma_F_contig10075:2871..29491622815532.4354286-CDS-S-firma_F_contig10075:2871..2949Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 2872..2949 +
1696949394.3851132-CDS-S-firma_F_contig10075:2871..29491696949394.3851132-CDS-S-firma_F_contig10075:2871..2949Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10075 2872..2949 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10075.144.1prot_S-firma_F_contig10075.144.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10075 1290..2949 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10075.144.1

>prot_S-firma_F_contig10075.144.1 ID=prot_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=131bp
KSYPLGFCGSLILPSFKGPRRQRPLFFHLRRRGLDISIKVVRANLSNKIT
PREGGGDQNPQETHPRRPSQREHRGIRSTNTCGDRHRQQHMSAPQLGGAI
PPDISNAEGIHRGTSAASAAGPPAKLAASLG
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mRNA from alignment at S-firma_F_contig10075:1290..2950+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10075.144.1 ID=mRNA_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1661bp|location=Sequence derived from alignment at S-firma_F_contig10075:1290..2950+ (Sphaerotrichia firma ET2_F female)
AAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAATCTTACCGAGCTTCAA
GGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACCTACGCCGCCGCGGTT
TGGACATATCAATCAAGGTCGTGCGAGCGAACCTAAGCAACAAGATAACT
CCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGAGACACACCCGAGGAG
ACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCACCAATACCTGTGGAG
ATAGACATCGGCAGCAGCACATGTCGGCGCCGCAGCTGGGAGGTGCTATT
CCGCCGGACATATCGGTGAGAGAGCCGTTCGGGTCGTGGTGAAACTCAGC
TGACTACGTAGCTGTGTGTGTTTTTACCGTGCGCGCGGCGGATCGACTCT
GCCTCACGAAGCCACCATCACTTGTACTGCTCTGTCGGTGATTCGTGGCC
GCGGATGTATCGTACACACCCAGGATTTCATTCACGGGGTGGTTCTGGCG
ACAGAGTGTTTCAAACGCGATTCCTTCGCACAGCGGGTTGCCGAATTCGG
AGTTTGGTAGCCGTCTCTGTGTGCCGCAGATCCCGTATAGGCAGAGCGCC
TCTAATTTATGTATCGCCGTAATCCTATCTTTAGTGTTTGTCTGCTACTG
CCGGTGTACAACCCCAGTTTGCTACTGTGTGCGTGAACACAAATGGGTGT
GCATGTAGTTGAGGGTTCCCTTGGGCATCTCATGCCAACCTCCCGATCTT
ACAGGATGCTCATGGCACTGTGTTCCCTGGGTTGGTGTTGGCGTTGAAAT
AAGAGTTGATCAGCCATGCGGGTGTTGGTTGTTTCTCGCGATTAAACCGA
CCCACCGAGGTATTTATGTATTTATACAAGCAGCAGCAGACGATTGGACT
TGATGGGTGGTTTGGGCGTCATGCCCGCATGAGAGACCGACATTCCACTT
CCGTGAGCCGCTTCAGTCAGCTGCCGACATGTTGTTGCCTTCACGCCGCA
GCCGCAGTTTCGTCACGCACTCATCCAACACATTCTGTGTCCAAGCTCGG
CTCCGGGATTGAAAAACACAAAACACAGCTCCGCGATGGTCCCTGAACTA
CATCCAGTTCGTGAACAGGCGCTCGAATGAACACTGATAACCCTGCGTGA
TTGACGCGAACACCTTCTGTCATGCCACGCATATGTAGCCTTGCGGCTGT
GCAAGGGGCACGTTCTAAGGTGGACTGAACGCCTACGGCGGCGGAGAGGC
TCCCCTGCACGAAAGCAAAAAGGCAACAAAGTACAATGTAGTGAAGTTGA
CTGCCTTGCGTATCCTTCGCATCATACGGTATATATAAATGGATGCTTCT
TTTTCGAAACAAATGGTTGGTTCGAGGATGGGGAAAAGCATTAAAACTCC
TCGGCGGGGTGGTTTTCTCAAGTTCCAGGCCGTCCTTTGTCTACAAGGTA
CCTGGCACAATCGACAGGCTACAGGCACGACGCCTAGAATACGCCTTGGC
GCCTTGACGCAAGCGCCAACTAACCATCATCCACCCGAATCATTGCTACT
GCTGTCGCTCGCGCACCCCCCGCTCCCCCCAGAACGCCGAAGGTATCCAT
CGAGGAACATCAGCCGCCTCTGCTGCCGGCCCCCCCGCCAAGCTAGCGGC
CTCTCTCGGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10075:1290..2950+

>mRNA_S-firma_F_contig10075.144.1 ID=mRNA_S-firma_F_contig10075.144.1|Name=mRNA_S-firma_F_contig10075.144.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=786bp|location=Sequence derived from alignment at S-firma_F_contig10075:1290..2950+ (Sphaerotrichia firma ET2_F female)
AAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAATCTTACCGAGCTTCAA
GGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACCTACGCCGCCGCGGTT
TGGACATATCAATCAAGGTCGTGCGAGCGAACCTAAGCAACAAGATAACT
CCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGAGACACACCCGAGGAG
ACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCACCAATACCTGTGGAG
ATAGACATCGGCAGCAGCACATGTCGGCGCCGCAGCTGGGAGGTGCTATT
CCGCCGGACATATCGAAATCGTATCCCCTAGGCTTTTGTGGCTCTCTAAT
CTTACCGAGCTTCAAGGGCCCGCGGCGCCAACGCCCGCTCTTTTTCCACC
TACGCCGCCGCGGTTTGGACATATCAATCAAGGTCGTGCGAGCGAACCTA
AGCAACAAGATAACTCCCCGTGAGGGAGGGGGAGACCAAAACCCACAAGA
GACACACCCGAGGAGACCAAGTCAGCGCGAGCACCGAGGGATACGCAGCA
CCAATACCTGTGGAGATAGACATCGGCAGCAGCACATGTCGGCGCCGCAG
CTGGGAGGTGCTATTCCGCCGGACATATCGAACGCCGAAGGTATCCATCG
AGGAACATCAGCCGCCTCTGCTGCCGGCCCCCCCGCCAAGCTAGCGGCCT
CTCTCGGCAACGCCGAAGGTATCCATCGAGGAACATCAGCCGCCTCTGCT
GCCGGCCCCCCCGCCAAGCTAGCGGCCTCTCTCGGC
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