mRNA_S-firma_F_contig10066.136.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10066.136.1
Unique NamemRNA_S-firma_F_contig10066.136.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A2U8E0D4_9BACT (Uncharacterized protein n=1 Tax=Ereboglobus luteus TaxID=1796921 RepID=A0A2U8E0D4_9BACT)

HSP 1 Score: 57.4 bits (137), Expect = 1.200e-7
Identity = 30/70 (42.86%), Postives = 46/70 (65.71%), Query Frame = 2 
Query:   47 VATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            +AT+ V+    S TF I    S+PSDNTP+KV+IT+ +L A  ++  +PA+  +A+L A V NT++Y  L
Sbjct:  368 IATASVDASTTSATFKILAATSIPSDNTPQKVSITVNKLDAKLQYQATPAMQETAFLSAYVTNTTEYPFL 437
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A0B7AAG8_9EUPU (Uncharacterized protein n=3 Tax=Arion vulgaris TaxID=1028688 RepID=A0A0B7AAG8_9EUPU)

HSP 1 Score: 56.6 bits (135), Expect = 2.250e-7
Identity = 35/76 (46.05%), Postives = 46/76 (60.53%), Query Frame = 2 
Query:   29 PAPTAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            P P   V   +V +   STT+ I R+++VPSD T  KVT+ I +L  T  + T P V   A+LQA V+NTS YTLL
Sbjct:  350 PVPIMPVPEVQVTESTTSTTYEIARLSTVPSDYTEHKVTVAIIDLKPTLTYVTVPKVVPHAFLQAKVINTSQYTLL 425
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: UPI00065B9BF0 (protein F37C4.5 isoform X1 n=2 Tax=Aplysia californica TaxID=6500 RepID=UPI00065B9BF0)

HSP 1 Score: 55.8 bits (133), Expect = 4.180e-7
Identity = 31/67 (46.27%), Postives = 44/67 (65.67%), Query Frame = 2 
Query:   59 RVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLP 259
            ++++   S ++ I R +S+PSDNT  KVT+ I EL  T  + + P V   A+LQA VVNTS +TLLP
Sbjct:  338 KIQETTVSASYEIVRQSSIPSDNTSHKVTVGIMELKPTMTYVSIPKVVPHAFLQAKVVNTSKFTLLP 404
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A139SQL2_9BACT (Uncharacterized protein n=2 Tax=Cephaloticoccus primus TaxID=1548207 RepID=A0A139SQL2_9BACT)

HSP 1 Score: 54.7 bits (130), Expect = 1.070e-6
Identity = 29/74 (39.19%), Postives = 49/74 (66.22%), Query Frame = 2 
Query:   38 TAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLP 259
            +A  A ++V++ A+  TF ++  A++PSDN+ KK+++T  +L A   +  +P    +A+L A+V NTSDY LLP
Sbjct:  346 SADYAEAQVDRSASVATFQVEAPATIPSDNSAKKISVTTLDLEAELAYRATPKRLPTAFLDASVRNTSDYPLLP 419
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A3E1E6D4_9BACT (Uncharacterized protein n=1 Tax=Verrucomicrobia bacterium TaxID=2026799 RepID=A0A3E1E6D4_9BACT)

HSP 1 Score: 54.3 bits (129), Expect = 1.460e-6
Identity = 34/72 (47.22%), Postives = 46/72 (63.89%), Query Frame = 2 
Query:   41 AGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            A +A + +E GA S +F I   ASVPSDN+P+KV I  + LAA   + T P    +A+L A VVNTS++ LL
Sbjct:  337 AEMAVAMIETGATSASFKIATSASVPSDNSPQKVPIMSERLAAKPEYLTVPKRLTTAFLTAKVVNTSEFPLL 408
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BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Match: A0A2U8E4K2_9BACT (Uncharacterized protein n=1 Tax=Ereboglobus luteus TaxID=1796921 RepID=A0A2U8E4K2_9BACT)

HSP 1 Score: 52.4 bits (124), Expect = 7.000e-6
Identity = 29/73 (39.73%), Postives = 47/73 (64.38%), Query Frame = 2 
Query:   38 TAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTITIQELAATFRFSTSPAVAASAYLQANVVNTSDYTLL 256
            T+  A ++V+    S +F I    S+PSDNTP+KV+IT  +L A  ++ + PA+  +AYL A V N++++ LL
Sbjct:  378 TSDYAVAKVDNTTTSASFKIAAATSIPSDNTPQKVSITTAKLGAKLQYQSLPALQETAYLSAYVDNSTEFPLL 450
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10066.136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A2U8E0D4_9BACT1.200e-742.86Uncharacterized protein n=1 Tax=Ereboglobus luteus... [more]
A0A0B7AAG8_9EUPU2.250e-746.05Uncharacterized protein n=3 Tax=Arion vulgaris Tax... [more]
UPI00065B9BF04.180e-746.27protein F37C4.5 isoform X1 n=2 Tax=Aplysia califor... [more]
A0A139SQL2_9BACT1.070e-639.19Uncharacterized protein n=2 Tax=Cephaloticoccus pr... [more]
A0A3E1E6D4_9BACT1.460e-647.22Uncharacterized protein n=1 Tax=Verrucomicrobia ba... [more]
A0A2U8E4K2_9BACT7.000e-639.73Uncharacterized protein n=1 Tax=Ereboglobus luteus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10066contigS-firma_F_contig10066:3825..4140 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog6500.XP_005097215.1
PFAMsDUF4139,DUF4140
Max annot lvl33208|Metazoa
GOsGO:0003674,GO:0005488,GO:0005515
Evalue1.28e-07
EggNOG OGs28Q1A@1|root,2QWQ0@2759|Eukaryota,39YYB@33154|Opisthokonta,3BJDT@33208|Metazoa,3D721@33213|Bilateria
DescriptionN-terminal domain of unknown function (DUF4140)
COG categoryS
Hectar predicted targeting categoryother localisation
Exons2
Model size264
Cds size261
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10066.136.1prot_S-firma_F_contig10066.136.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10066 3826..4140 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.5504303-UTR-S-firma_F_contig10066:3824..38251622815531.5504303-UTR-S-firma_F_contig10066:3824..3825Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10066 3825..3825 +
1696949393.5958595-UTR-S-firma_F_contig10066:3824..38251696949393.5958595-UTR-S-firma_F_contig10066:3824..3825Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10066 3825..3825 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.5613523-CDS-S-firma_F_contig10066:3825..40311622815531.5613523-CDS-S-firma_F_contig10066:3825..4031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10066 3826..4031 +
1696949393.6063454-CDS-S-firma_F_contig10066:3825..40311696949393.6063454-CDS-S-firma_F_contig10066:3825..4031Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10066 3826..4031 +
1622815531.57194-CDS-S-firma_F_contig10066:4085..41401622815531.57194-CDS-S-firma_F_contig10066:4085..4140Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10066 4086..4140 +
1696949393.6164265-CDS-S-firma_F_contig10066:4085..41401696949393.6164265-CDS-S-firma_F_contig10066:4085..4140Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10066 4086..4140 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10066.136.1

>prot_S-firma_F_contig10066.136.1 ID=prot_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=87bp
MPPGAPRPPPAPTAGVATSRVEKGAASTTFLIDRVASVPSDNTPKKVTIT
IQELAATFRFSTSPAVAASAYLQANVVNTSDYTLLPS
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mRNA from alignment at S-firma_F_contig10066:3825..4140+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10066.136.1 ID=mRNA_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=316bp|location=Sequence derived from alignment at S-firma_F_contig10066:3825..4140+ (Sphaerotrichia firma ET2_F female)
CATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGGCGTGG
CCACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCATTGAC
CGTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACGATTAC
CATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGCTGTCG
CCGCCAGGTGCGTGTTTGCTTTGTGGCCCTCGCCGCACGCCCACCCTCTT
GTGTGTTGCAGCGCGTACCTGCAGGCCAACGTCGTCAACACGTCGGATTA
CACCCTGCTGCCGTCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10066:3825..4140+

>mRNA_S-firma_F_contig10066.136.1 ID=mRNA_S-firma_F_contig10066.136.1|Name=mRNA_S-firma_F_contig10066.136.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=522bp|location=Sequence derived from alignment at S-firma_F_contig10066:3825..4140+ (Sphaerotrichia firma ET2_F female)
ATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGGCGTGGC
CACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCATTGACC
GTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACGATTACC
ATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGCTGTCGC
CGCCAGATGCCGCCGGGTGCCCCCCGCCCTCCGCCGGCCCCCACCGCGGG
CGTGGCCACCAGCCGCGTTGAGAAGGGTGCCGCCAGCACCACTTTCCTCA
TTGACCGTGTGGCCAGCGTGCCGTCGGACAACACCCCCAAGAAGGTCACG
ATTACCATCCAGGAGCTTGCCGCGACGTTCCGGTTTTCGACGTCGCCGGC
TGTCGCCGCCAGCGCGTACCTGCAGGCCAACGTCGTCAACACGTCGGATT
ACACCCTGCTGCCGTCGCGCGTACCTGCAGGCCAACGTCGTCAACACGTC
GGATTACACCCTGCTGCCGTCG
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