mRNA_S-firma_F_contig10064.134.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10064.134.1
Unique NamemRNA_S-firma_F_contig10064.134.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A5J4YQK9_PORPP (Chromodomain-helicase-DNA-binding protein 4 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4YQK9_PORPP)

HSP 1 Score: 68.2 bits (165), Expect = 5.470e-12
Identity = 26/47 (55.32%), Postives = 31/47 (65.96%), Query Frame = 1 
Query:   25 IHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            +H+S CY C +GGRL+CC+ C  V HL C QPPL A P  DW C  C
Sbjct:  365 LHDSCCYMCNEGGRLLCCNGCSHVVHLGCVQPPLPATPRGDWYCSDC 411
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A2G8LE03_STIJA (Putative nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Stichopus japonicus TaxID=307972 RepID=A0A2G8LE03_STIJA)

HSP 1 Score: 67.0 bits (162), Expect = 1.400e-11
Identity = 27/52 (51.92%), Postives = 35/52 (67.31%), Query Frame = 1 
Query:   10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            S+ A  ++  C +C   G LICC +C  V HLEC +PPL AVP+DDW+C VC
Sbjct:  140 SEGAITYDDHCRSCHRLGDLICCETCSAVYHLECVEPPLKAVPEDDWLCSVC 191
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A3B3SLR2_9TELE (DNA helicase n=4 Tax=Paramormyrops kingsleyae TaxID=1676925 RepID=A0A3B3SLR2_9TELE)

HSP 1 Score: 66.2 bits (160), Expect = 2.620e-11
Identity = 26/51 (50.98%), Postives = 32/51 (62.75%), Query Frame = 1 
Query:   13 QDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            Q+   H  FC  C+DGG L+CC SC    HL C  PPLA++PD +WVC  C
Sbjct:  359 QEDDNHMEFCRVCKDGGELLCCDSCPSSYHLRCLNPPLASIPDGEWVCPRC 409
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI00145592FB (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Asterias rubens TaxID=7604 RepID=UPI00145592FB)

HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            S+ A  ++  C AC   G L+CC +C  V HLEC  PPL  VP+DDW+C VC
Sbjct:  385 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 436
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A8B7XHH5_ACAPL (nucleosome-remodeling factor subunit BPTF-like isoform X1 n=2 Tax=Acanthaster planci TaxID=133434 RepID=A0A8B7XHH5_ACAPL)

HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            S+ A  ++  C AC   G L+CC +C  V HLEC  PPL  VP+DDW+C VC
Sbjct:  444 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 495
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI0018D63C23 (nucleosome-remodeling factor subunit BPTF-like isoform X1 n=2 Tax=Patiria miniata TaxID=46514 RepID=UPI0018D63C23)

HSP 1 Score: 66.2 bits (160), Expect = 2.630e-11
Identity = 26/52 (50.00%), Postives = 33/52 (63.46%), Query Frame = 1 
Query:   10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            S+ A  ++  C AC   G L+CC +C  V HLEC  PPL  VP+DDW+C VC
Sbjct:  442 SEGAITYDDHCRACHKLGDLLCCETCTAVYHLECVDPPLTEVPEDDWLCSVC 493
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI0003F0B9BA (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Saccoglossus kowalevskii TaxID=10224 RepID=UPI0003F0B9BA)

HSP 1 Score: 63.2 bits (152), Expect = 3.190e-10
Identity = 24/53 (45.28%), Postives = 33/53 (62.26%), Query Frame = 1 
Query:   10 SQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVCA 168
            ++ A  ++  C  C   G L+CC +C  V HLEC  PPL  VP++DWVC +CA
Sbjct:  307 NEGAITYDDHCRNCHKMGDLLCCETCSAVYHLECVNPPLEEVPEEDWVCEICA 359
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: A0A7R9A7M3_9CRUS (Hypothetical protein n=1 Tax=Darwinula stevensoni TaxID=69355 RepID=A0A7R9A7M3_9CRUS)

HSP 1 Score: 62.0 bits (149), Expect = 8.180e-10
Identity = 24/47 (51.06%), Postives = 29/47 (61.70%), Query Frame = 1 
Query:   25 IHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            IHE  C  C   G L+CC +C  V HL+C  PPL  VPD+DW C +C
Sbjct:  324 IHEDHCRVCHRLGDLLCCETCSGVYHLQCMDPPLEDVPDEDWQCQIC 370
[Close]
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: UPI001B8877C6 (nucleosome-remodeling factor subunit BPTF-like n=1 Tax=Gigantopelta aegis TaxID=1735272 RepID=UPI001B8877C6)

HSP 1 Score: 61.2 bits (147), Expect = 1.530e-9
Identity = 24/53 (45.28%), Postives = 32/53 (60.38%), Query Frame = 1 
Query:    7 TSQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            T +    ++  C AC   G L+CC +C  V HL C  PP+A VP+DDW+C VC
Sbjct:  315 TDEGNIHYDDHCRACHKLGDLLCCETCSAVYHLACVDPPMAEVPEDDWLCSVC 367
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BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Match: H0WSN5_OTOGA (DNA helicase n=139 Tax=Eutheria TaxID=9347 RepID=H0WSN5_OTOGA)

HSP 1 Score: 60.8 bits (146), Expect = 2.090e-9
Identity = 22/46 (47.83%), Postives = 29/46 (63.04%), Query Frame = 1 
Query:   28 HESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDWVCHVC 165
            H  FC  C+DGG L+CC +C    HL C  PPLA +P+ +W+C  C
Sbjct:  414 HMEFCRVCKDGGELLCCDACPSSYHLHCLNPPLAEIPNGEWLCPRC 459
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10064.134.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A5J4YQK9_PORPP5.470e-1255.32Chromodomain-helicase-DNA-binding protein 4 n=1 Ta... [more]
A0A2G8LE03_STIJA1.400e-1151.92Putative nucleosome-remodeling factor subunit BPTF... [more]
A0A3B3SLR2_9TELE2.620e-1150.98DNA helicase n=4 Tax=Paramormyrops kingsleyae TaxI... [more]
UPI00145592FB2.630e-1150.00nucleosome-remodeling factor subunit BPTF-like n=1... [more]
A0A8B7XHH5_ACAPL2.630e-1150.00nucleosome-remodeling factor subunit BPTF-like iso... [more]
UPI0018D63C232.630e-1150.00nucleosome-remodeling factor subunit BPTF-like iso... [more]
UPI0003F0B9BA3.190e-1045.28nucleosome-remodeling factor subunit BPTF-like n=1... [more]
A0A7R9A7M3_9CRUS8.180e-1051.06Hypothetical protein n=1 Tax=Darwinula stevensoni ... [more]
UPI001B8877C61.530e-945.28nucleosome-remodeling factor subunit BPTF-like n=1... [more]
H0WSN5_OTOGA2.090e-947.83DNA helicase n=139 Tax=Eutheria TaxID=9347 RepID=H... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10064contigS-firma_F_contig10064:422..589 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog7668.SPU_023296-tr
Preferred nameCHD5
PFAMsCHDCT2,CHDNT,Chromo,DUF1086,DUF1087,Helicase_C,PHD,SNF2_N
Max annot lvl33208|Metazoa
KEGG koko:K11642,ko:K11643,ko:K14435
KEGG Pathwayko05165,ko05203,map05165,map05203
GOsGO:0000003,GO:0000118,GO:0000122,GO:0000226,GO:0000228,GO:0000785,GO:0000790,GO:0000792,GO:0001085,GO:0001103,GO:0001709,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003682,GO:0003824,GO:0004003,GO:0004386,GO:0004407,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005694,GO:0005700,GO:0005730,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0006139,GO:0006323,GO:0006325,GO:0006333,GO:0006338,GO:0006351,GO:0006355,GO:0006357,GO:0006366,GO:0006464,GO:0006473,GO:0006475,GO:0006476,GO:0006479,GO:0006725,GO:0006807,GO:0006996,GO:0006997,GO:0007010,GO:0007017,GO:0007049,GO:0007051,GO:0007063,GO:0007098,GO:0007275,GO:0007276,GO:0007281,GO:0007283,GO:0007286,GO:0007289,GO:0007399,GO:0007417,GO:0007420,GO:0008026,GO:0008094,GO:0008134,GO:0008150,GO:0008152,GO:0008213,GO:0008270,GO:0008285,GO:0009058,GO:0009059,GO:0009653,GO:0009790,GO:0009887,GO:0009889,GO:0009890,GO:0009892,GO:0009966,GO:0009967,GO:0009968,GO:0009987,GO:0010467,GO:0010468,GO:0010556,GO:0010558,GO:0010564,GO:0010605,GO:0010629,GO:0010639,GO:0010646,GO:0010647,GO:0010648,GO:0010948,GO:0015630,GO:0016043,GO:0016070,GO:0016462,GO:0016569,GO:0016570,GO:0016571,GO:0016573,GO:0016575,GO:0016581,GO:0016604,GO:0016607,GO:0016787,GO:0016810,GO:0016811,GO:0016817,GO:0016818,GO:0016887,GO:0017053,GO:0017111,GO:0018022,GO:0018130,GO:0018193,GO:0018205,GO:0018393,GO:0018394,GO:0019213,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0019899,GO:0019953,GO:0021895,GO:0021953,GO:0022008,GO:0022402,GO:0022412,GO:0022414,GO:0023051,GO:0023056,GO:0023057,GO:0030154,GO:0030182,GO:0030261,GO:0030900,GO:0031023,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031491,GO:0031974,GO:0031981,GO:0032259,GO:0032392,GO:0032501,GO:0032502,GO:0032504,GO:0032508,GO:0032774,GO:0032879,GO:0032880,GO:0032991,GO:0032993,GO:0033043,GO:0033044,GO:0033045,GO:0033046,GO:0033558,GO:0034641,GO:0034645,GO:0034654,GO:0034728,GO:0034968,GO:0035064,GO:0035092,GO:0035093,GO:0035239,GO:0035295,GO:0035327,GO:0035601,GO:0036211,GO:0040027,GO:0040028,GO:0042127,GO:0042393,GO:0042623,GO:0042766,GO:0042826,GO:0043044,GO:0043167,GO:0043169,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043412,GO:0043414,GO:0043486,GO:0043543,GO:0043933,GO:0043967,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044430,GO:0044444,GO:0044446,GO:0044451,GO:0044454,GO:0044464,GO:0044703,GO:0044877,GO:0045165,GO:0045595,GO:0045786,GO:0045875,GO:0045892,GO:0045934,GO:0046483,GO:0046578,GO:0046580,GO:0046872,GO:0046914,GO:0048232,GO:0048468,GO:0048513,GO:0048515,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0048546,GO:0048557,GO:0048562,GO:0048565,GO:0048566,GO:0048568,GO:0048580,GO:0048581,GO:0048583,GO:0048584,GO:0048585,GO:0048598,GO:0048609,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050789,GO:0050793,GO:0050794,GO:0050808,GO:0051056,GO:0051058,GO:0051093,GO:0051098,GO:0051101,GO:0051128,GO:0051129,GO:0051171,GO:0051172,GO:0051239,GO:0051241,GO:0051252,GO:0051253,GO:0051276,GO:0051312,GO:0051704,GO:0051726,GO:0051983,GO:0051985,GO:0055123,GO:0060255,GO:0060322,GO:0060341,GO:0060850,GO:0061062,GO:0061064,GO:0061628,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070491,GO:0070603,GO:0070615,GO:0070734,GO:0071103,GO:0071704,GO:0071824,GO:0071840,GO:0071922,GO:0071923,GO:0072553,GO:0080090,GO:0090304,GO:0090545,GO:0090568,GO:0090571,GO:0097159,GO:0097659,GO:0098532,GO:0098732,GO:0099172,GO:0140030,GO:0140034,GO:0140096,GO:0140097,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901796,GO:1901798,GO:1902494,GO:1902531,GO:1902532,GO:1902533,GO:1902679,GO:1903506,GO:1903507,GO:1903827,GO:1903828,GO:1904949,GO:1905634,GO:2000026,GO:2000112,GO:2000113,GO:2001141,GO:2001251
Evalue8.04e-12
EggNOG OGsCOG0553@1|root,KOG0383@2759|Eukaryota,38BGB@33154|Opisthokonta,3B940@33208|Metazoa,3CVFP@33213|Bilateria
EC3.6.4.12
DescriptionH3K27me3 modified histone binding
COG categoryKL
BRITEko00000,ko00001,ko01000,ko03036
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size168
Cds size168
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.373933-CDS-S-firma_F_contig10064:421..5891622815531.373933-CDS-S-firma_F_contig10064:421..589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10064 422..589 +
1696949393.5097218-CDS-S-firma_F_contig10064:421..5891696949393.5097218-CDS-S-firma_F_contig10064:421..589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10064 422..589 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10064.134.1prot_S-firma_F_contig10064.134.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10064 422..589 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10064.134.1

>prot_S-firma_F_contig10064.134.1 ID=prot_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=56bp
MGTSQDAAIHESFCYACQDGGRLICCSSCVRVSHLECAQPPLAAVPDDDW
VCHVCA
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mRNA from alignment at S-firma_F_contig10064:422..589+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10064.134.1 ID=mRNA_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=168bp|location=Sequence derived from alignment at S-firma_F_contig10064:422..589+ (Sphaerotrichia firma ET2_F female)
ATGGGGACCTCACAGGACGCGGCCATCCACGAAAGCTTTTGCTACGCTTG
CCAGGACGGGGGCCGCCTGATTTGCTGCAGCTCATGTGTCCGGGTGTCGC
ACTTGGAGTGTGCCCAGCCGCCGCTGGCGGCTGTCCCAGACGATGACTGG
GTGTGCCACGTTTGCGCG
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Coding sequence (CDS) from alignment at S-firma_F_contig10064:422..589+

>mRNA_S-firma_F_contig10064.134.1 ID=mRNA_S-firma_F_contig10064.134.1|Name=mRNA_S-firma_F_contig10064.134.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=336bp|location=Sequence derived from alignment at S-firma_F_contig10064:422..589+ (Sphaerotrichia firma ET2_F female)
ATGGGGACCTCACAGGACGCGGCCATCCACGAAAGCTTTTGCTACGCTTG
CCAGGACGGGGGCCGCCTGATTTGCTGCAGCTCATGTGTCCGGGTGTCGC
ACTTGGAGTGTGCCCAGCCGCCGCTGGCGGCTGTCCCAGACGATGACTGG
GTGTGCCACGTTTGCGCGATGGGGACCTCACAGGACGCGGCCATCCACGA
AAGCTTTTGCTACGCTTGCCAGGACGGGGGCCGCCTGATTTGCTGCAGCT
CATGTGTCCGGGTGTCGCACTTGGAGTGTGCCCAGCCGCCGCTGGCGGCT
GTCCCAGACGATGACTGGGTGTGCCACGTTTGCGCG
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