prot_S-firma_F_contig110.1333.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_S-firma_F_contig110.1333.1
Unique Name	prot_S-firma_F_contig110.1333.1
Type	polypeptide
Organism	Sphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length	259

Homology

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BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 396 bits (1017), Expect = 1.250e-137
Identity = 192/209 (91.87%), Postives = 202/209 (96.65%), Query Frame = 0

Query:    3 RNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPDDVTKRKTTLELDPAGDRMHLSFENRPDFEPLEGKFKDLISPLDSVWMLDE 211
            RN RKRQEDIDRLT+LRHNLRDLP QRQCHRYRWTQTETTFDVEIPMLKAC DEDLYLVV++DQ+QVAIKTDESFGAITGVFPGDVDA SCS+RIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGE+ESPTIRFKGETPRYSWKQNAETIEL+IPVPDDVTKRKTTL+LDPAGDR+H+SF NRPDFEPLEGKFK LISPLDSVWML E
Sbjct:   29 RNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237

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BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 1.330e-43
Identity = 85/238 (35.71%), Postives = 127/238 (53.36%), Query Frame = 0

Query:   24 DLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPDDVTKRKTTLELDPAGD--------------RMHLSFENRPDFEPLEGKFKDLISPLDSVWMLDENDDG-KMLALTVKKRRAARDRTAWWSGVLEGDDKW 245
            ++P QR+CH+YRW QT     VE+P+ +AC  EDL  V+    +Q++I++D +F  + G FPG VD  + +Y +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T ++    G               R+ LS E  P+    E +F+  I   D  WMLDE+  G K L++ V KR +      WW G+ E +D W
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAG-VPWWGGLFEHEDGW 279

The following BLAST results are available for this feature:

BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot

BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2


Match Name	E-value	Identity	Description
D8LL06_ECTSI	1.250e-137	91.87	Uncharacterized protein n=1 Tax=Ectocarpus silicul...	[more]
A0A836CLX2_9STRA	1.330e-43	35.71	Uncharacterized protein n=1 Tax=Tribonema minus Ta...	[more]

InterPro

Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007052	CS domain	PFAM	PF04969	CS	coord: 142..224 e-value: 1.2E-6 score: 29.4 coord: 33..99 e-value: 2.0E-4 score: 22.3
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 139..239 score: 12.634
IPR007052	CS domain	PROSITE	PS51203	CS	coord: 29..126 score: 8.903
IPR008978	HSP20-like chaperone	GENE3D	2.60.40.790		coord: 23..132 e-value: 7.4E-11 score: 44.0 coord: 133..253 e-value: 9.4E-18 score: 66.3
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 31..138
IPR008978	HSP20-like chaperone	SUPERFAMILY	49764	HSP20-like chaperones	coord: 133..249
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 132..248
IPR037898	NudC family	PANTHER	PTHR12356	NUCLEAR MOVEMENT PROTEIN NUDC	coord: 29..134
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 29..134
None	No IPR available	PANTHER	PTHR12356:SF3	NUCLEAR MIGRATION PROTEIN NUDC	coord: 132..248

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
S-firma_F_contig110	contig	S-firma_F_contig110:23930..27098 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female	2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90	2022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_S-firma_F_contig110.1333.1	mRNA_S-firma_F_contig110.1333.1	Sphaerotrichia firma ET2_F female	mRNA	S-firma_F_contig110 23500..27103 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_S-firma_F_contig110.1333.1 ID=prot_S-firma_F_contig110.1333.1|Name=mRNA_S-firma_F_contig110.1333.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=259bp
MRRNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPML
KACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSR
FNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNA
ETIELEIPVPDDVTKRKTTLELDPAGDRMHLSFENRPDFEPLEGKFKDLI
SPLDSVWMLDENDDGKMLALTVKKRRAARDRTAWWSGVLEGDDKWEPQQP
TSAERQQP*

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR037898	NudC_fam
IPR008978	HSP20-like_chaperone
IPR007052	CS_dom