mRNA_S-firma_F_contig110.1333.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig110.1333.1
Unique NamemRNA_S-firma_F_contig110.1333.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Match: D8LL06_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LL06_ECTSI)

HSP 1 Score: 424 bits (1091), Expect = 6.460e-148
Identity = 209/241 (86.72%), Postives = 223/241 (92.53%), Query Frame = 1 
Query:   82 PAGPDEVPNDPNELQPDELQRLERDYYERAMRRNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPDDVTKRKTTLELDPAGDRMHLSFENRPDFEPLEGKFKDLISPLDSVWMLDE 804
            P+    +P DPNELQ     RLER+YYERA +RN RKRQEDIDRLT+LRHNLRDLP QRQCHRYRWTQTETTFDVEIPMLKAC DEDLYLVV++DQ+QVAIKTDESFGAITGVFPGDVDA SCS+RIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGE+ESPTIRFKGETPRYSWKQNAETIEL+IPVPDDVTKRKTTL+LDPAGDR+H+SF NRPDFEPLEGKFK LISPLDSVWML E
Sbjct:    2 PSQAQRIPEDPNELQ-----RLEREYYERAKKRNTRKRQEDIDRLTELRHNLRDLPMQRQCHRYRWTQTETTFDVEIPMLKACRDEDLYLVVEKDQMQVAIKTDESFGAITGVFPGDVDARSCSFRIHSRFNEPYIHLEIVKLTAPGMYEFWHELLQGEEESPTIRFKGETPRYSWKQNAETIELQIPVPDDVTKRKTTLDLDPAGDRIHVSFSNRPDFEPLEGKFKGLISPLDSVWMLGE 237
[Close]
BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Match: A0A836CLX2_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CLX2_9STRA)

HSP 1 Score: 158 bits (399), Expect = 7.410e-43
Identity = 85/238 (35.71%), Postives = 127/238 (53.36%), Query Frame = 1 
Query:  241 DLPKQRQCHRYRWTQTETTFDVEIPMLKACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSRFN-EPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNAETIELEIPVPDDVTKRKTTLELDPAGD--------------RMHLSFENRPDFEPLEGKFKDLISPLDSVWMLDENDDG-KMLALTVKKRRAARDRTAWWSGVLEGDDKW 906
            ++P QR+CH+YRW QT     VE+P+ +AC  EDL  V+    +Q++I++D +F  + G FPG VD  + +Y +HS  + + Y+ L + KL  PG  E W+ LL+GE  +PT+RF+G T  Y+W Q    I++   VP   T   T ++    G               R+ LS E  P+    E +F+  I   D  WMLDE+  G K L++ V KR +      WW G+ E +D W
Sbjct:   43 EVPTQRECHQYRWFQTNELISVEVPLYRACKAEDLSFVLSEGGMQISIRSDPTFAPLAGEFPGKVDTRASTYSLHSDGSGDHYLALVLRKLALPGTSELWYCLLEGETPAPTVRFRGATRLYAWTQRPRVIDVAFRVPPRTTAATTRVDFGEDGXXXXXXXXXXXXXXARLSLSVEGCPELTRFERRFQGAIDAADCFWMLDEDGKGGKELSIQVAKRPSGAG-VPWWGGLFEHEDGW 279
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig110.1333.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LL06_ECTSI6.460e-14886.72Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A836CLX2_9STRA7.410e-4335.71Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig110contigS-firma_F_contig110:23500..27103 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog5808.XP_002141127.1
PFAMsCS,Nudc_N
Max annot lvl5794|Apicomplexa
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005829,GO:0006457,GO:0006810,GO:0007097,GO:0008150,GO:0009987,GO:0012505,GO:0032502,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0046907,GO:0051082,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051647,GO:0051649,GO:0051656
Evalue1.26e-05
EggNOG OGsKOG2265@1|root,KOG2265@2759|Eukaryota,3YA13@5794|Apicomplexa,3YN6G@5796|Coccidia
DescriptionN-terminal conserved domain of Nudc.
COG categoryT
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionHSP20-like chaperone
Ec32 orthologEc-11_006260.1
Exons6
Model size953
Cds size777
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig110.1333.1prot_S-firma_F_contig110.1333.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig110 23930..27098 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.1060078-UTR-S-firma_F_contig110:23499..236401622815647.1060078-UTR-S-firma_F_contig110:23499..23640Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 23500..23640 +
1696949476.8393364-UTR-S-firma_F_contig110:23499..236401696949476.8393364-UTR-S-firma_F_contig110:23499..23640Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 23500..23640 +
1622815647.1189249-UTR-S-firma_F_contig110:23899..239291622815647.1189249-UTR-S-firma_F_contig110:23899..23929Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 23900..23929 +
1696949476.8560755-UTR-S-firma_F_contig110:23899..239291696949476.8560755-UTR-S-firma_F_contig110:23899..23929Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 23900..23929 +
1622815647.2019556-UTR-S-firma_F_contig110:27098..271031622815647.2019556-UTR-S-firma_F_contig110:27098..27103Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 27099..27103 +
1696949476.9983952-UTR-S-firma_F_contig110:27098..271031696949476.9983952-UTR-S-firma_F_contig110:27098..27103Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig110 27099..27103 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815647.1363418-CDS-S-firma_F_contig110:23929..241721622815647.1363418-CDS-S-firma_F_contig110:23929..24172Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 23930..24172 +
1696949476.8660734-CDS-S-firma_F_contig110:23929..241721696949476.8660734-CDS-S-firma_F_contig110:23929..24172Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 23930..24172 +
1622815647.1512487-CDS-S-firma_F_contig110:25196..253021622815647.1512487-CDS-S-firma_F_contig110:25196..25302Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 25197..25302 +
1696949476.878154-CDS-S-firma_F_contig110:25196..253021696949476.878154-CDS-S-firma_F_contig110:25196..25302Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 25197..25302 +
1622815647.1643977-CDS-S-firma_F_contig110:25855..259681622815647.1643977-CDS-S-firma_F_contig110:25855..25968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 25856..25968 +
1696949476.9003046-CDS-S-firma_F_contig110:25855..259681696949476.9003046-CDS-S-firma_F_contig110:25855..25968Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 25856..25968 +
1622815647.179658-CDS-S-firma_F_contig110:26220..263861622815647.179658-CDS-S-firma_F_contig110:26220..26386Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 26221..26386 +
1696949476.9546847-CDS-S-firma_F_contig110:26220..263861696949476.9546847-CDS-S-firma_F_contig110:26220..26386Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 26221..26386 +
1622815647.1914716-CDS-S-firma_F_contig110:26949..270981622815647.1914716-CDS-S-firma_F_contig110:26949..27098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 26950..27098 +
1696949476.971806-CDS-S-firma_F_contig110:26949..270981696949476.971806-CDS-S-firma_F_contig110:26949..27098Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig110 26950..27098 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig110.1333.1

>prot_S-firma_F_contig110.1333.1 ID=prot_S-firma_F_contig110.1333.1|Name=mRNA_S-firma_F_contig110.1333.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=259bp
MRRNKRKRQEDIDRLTKLRHNLRDLPKQRQCHRYRWTQTETTFDVEIPML
KACTDEDLYLVVDRDQLQVAIKTDESFGAITGVFPGDVDATSCSYRIHSR
FNEPYIHLEIVKLTAPGMYEFWHELLQGEKESPTIRFKGETPRYSWKQNA
ETIELEIPVPDDVTKRKTTLELDPAGDRMHLSFENRPDFEPLEGKFKDLI
SPLDSVWMLDENDDGKMLALTVKKRRAARDRTAWWSGVLEGDDKWEPQQP
TSAERQQP*
back to top

mRNA from alignment at S-firma_F_contig110:23500..27103+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig110.1333.1 ID=mRNA_S-firma_F_contig110.1333.1|Name=mRNA_S-firma_F_contig110.1333.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=3604bp|location=Sequence derived from alignment at S-firma_F_contig110:23500..27103+ (Sphaerotrichia firma ET2_F female)
GCACGGGGAGCACCCCGAAGTTCACAGTCCCGCGTGGGGGCTGCTGCTCC
GGAGGCGGACGCAGCCGGCGACTCATGGGCACCCGCCGGGCCCGACGAGG
TTCCCAACGATCCTAACGAACTGCAGCCCGATGAACTACAGGTGGGTGAC
ATGTGAACGCGTTTTCCTCGGGGGGAGAAGCATACGCACAACATGTGTAC
TTGCATCTGGCGGACAACAAGGGTTGACGTGCTGTAGGCGTTTGACCTTG
AACGTCAACTTGGCGACTGATTGCGGCAGCGATCGGCACTGATGCCACCA
GTACTGCGGCGCTGCTTGGTCTGCGTTGCATGTCGTCTCTGACGCACATA
TCGACGGCCATTCCCCTCCTCCGCGAATCCCATGCCATGCGTATTGCCAG
CGGTTGGAGCGCGACTACTACGAAAGGGCCATGAGACGCAACAAGCGGAA
GCGTCAGGAGGACATCGACCGGCTCACGAAGCTGAGGCACAACCTCAGAG
ACCTGCCCAAGCAGCGCCAGTGCCACCGCTACCGATGGACGCAGACGGAG
ACCACCTTCGACGTCGAGATACCCATGCTCAAGGCCTGCACAGACGAGGA
CCTGTACCTCGTGGTGGACAGGGACCAGCTGCAGGTTGCCATCAAGACGG
ACGAGTCGTTCGGGGCCATCACGGTGGGTTGGTTTCATGTTTGTTCTCTC
CTCTCTTCCCATTATTGGCTTGTTCGTCGTCTGCCCCACTGGCCCCTATC
CTGCTCCACTACGACTAGCTAGACGGCCCAACCGGGGCCACACAGGAGGG
GGGGGTTGGACCCCCTCCTGCGGTGCATGTGTATGATATGTGCGGTACAA
AGGGCTCCGCCGAGGGCGGAATGCCATGTCAAGTGGTCTAGAATAGAAGC
AGCCTTTTTTTTTCGGAAGGCTCGCAAAGGGTGACGTCACAGAACCGGTC
GAAGACTCGAGTTCGCGCCCTCGCTGCAGCCACGCCACGGCCGCCCCAAC
CCCGAGCGCACACCGGCAAGGCAAGGCCCTCGCCACGTAGGGCTACCGGT
AGTCGCAAGTCTCGCGGCGATTCGAGGTCTAAGGGCGGAGAAATCGCAAA
AACAGAGCTCTCGAGCGCTCACAGCGCATCTCGCAAGTATGAAAGTCTGT
ATGGTTATGTTTATGCTGGTGCAAGAAAACAACAATAGCAACAACTACTA
TGCTGTAGTAGAGTGCGAAGGACTGGTGAAGGGTCGGGAGTTCGTAACTC
GATGTATGATGTATGGGTGCATGTACTCGGGGGAAATGTAACAGCTGCTA
CCTGGTGTTGCTGTAGGTTCTAGTGGCGGTCTTAGAAGCTCAGATGTGAA
CAGGGGATGATACGCGTGCTTGCTTGTAGTCCTGCATGTATTTTCTCATC
TCTACAAAAGCAAGTACTCAGTCTCAACACAAAAAAAGTAGCCCTTGCTT
GTAAACAATGTAACACCTCTCATCCCTCTGTGTTGTGTTGCTAGTTTTTA
GTTGTATTATGGCCGCACAGATAGCGCCGTACAGCGGTGCCGCTCACCTG
CCTCCGGTTTTGTGCCTGTTTCTTCAGGTTGCCGATTACGATATTGCCAG
CTACCGTATTACCATACTACCACATTGCATTTGCCCCCAACGACACAAGT
AACCTATCTAATACGAAGTAATAATGCAAAATATATTATATTTGCAGGGC
GTTTTCCCGGGTGACGTGGATGCCACAAGTTGCAGCTATCGGATCCACAG
TCGTTTCAACGAGCCCTACATCCACCTAGAAATCGTCAAGCTGACCGCCC
CAGGTGAGTTACAACGAACGGCTGGTGCGTCGTTGTTCGCTTCAAAGCTC
CTGGTGCTGCTGCTGATATATGGGGTTTGTGCCGAGGAAAAGAATGCGCT
CACGCGCACGGCTTTCTTTTCTCCAACAAGGGTTGTTGGCGCCTCTCTTC
TCGTTTTCGCTTCGTCTTCTTGGCCGGTACGATTTAGGTTATTAGCGCCG
AGATTCACGATGGTGCGTTCTTTCTTGTGTTGGTGTCCGTGAAGGATTGG
GCTGTTTAGCGGCGCACAATTGGGCAGCACGCAGAGCAGTACTGCATTCG
CACATGTCGAGTCATCGAATGTTCCAACTGCGTTTTGATACTCTGTTTCC
GAAACGCTCGCACAATCGAATGCATACCAACGTACGCAGGTATGTTGTTT
AGTCATGGCATGCCATGGACTCGTGGTCGTGTTTCACGCCAAATGGCTGT
CTTCTATCTGCGGCCCGACCTGTACTGATTTGTAGCCCTCAATCAACGGC
AGCGTCGCTTCCTTGCGGGTTGGTACTTGTAATCCTCTCAACTTGACTAC
AACTAGGGATGTACGAGTTCTGGCACGAGCTGCTACAGGGCGAGAAAGAG
AGTCCTACCATCCGTTTCAAGGGAGAGACGCCGCGCTACAGCTGGAAGCA
GAACGCCGAGACAATAGAGGTCAGCCGGTGCCGGCGCCCGCTTCGCCGCG
AAAGGGTTGATTGATTGCCCGTGCTGCTGTCCCTATGCCGCAGACCTGAA
CTCCGTTTTTGTGTACGCTGATGTTGCTGTCAACATTAACATTCGCGCAC
GAGAGTGTTGAACTGACGCCCAAACACTGCAGGACAACCGCGTGTGACAC
TATCGGTACCGCTGGCTTTCGTTTTCTATGATATGAACAATCTTACCGGT
ACTGTATCGATTTCCGTTCAGTTGGAGATTCCCGTGCCGGATGACGTGAC
GAAGCGAAAAACGACGCTCGAGCTGGACCCGGCGGGAGACCGGATGCACC
TCTCCTTCGAAAACAGGCCGGACTTCGAGCCTCTGGAGGGGAAGTTTAAG
GATCTCATCAGCCCGCTTGACTCCGTGTGGATGCTGGGTGAGCGCAGGCC
TGCTCGTAGCCGCCACAACGACGCATCTCTCTATTTCCAAGCGCCAGTAT
AGCTTACCGCTACTTCGTGGTCGACCCCGTTGCTTTGGATTGCTCCTGTC
GTCTAGATGACCACGTTCGGCACCGGCGAAAAGCGCAGATAGCAGATAGC
ATTGTTGAAGACGCGGTTCATATCCCTAAAATGTAGCTAAGGCGCGCGTA
AATTTAGCTCCTTCGTCGTATCATATCTTACTCTTATCTTTCCTTGCGTG
TCTGTCTTTCGAGGGGGGGTGTCATCCGTCCATTGCCGTTGCTGCCGTTA
CGACATTTTTATCTAGGTAAAAACACGTCGGTTTGATTCCACAGGCTACA
GCAGGTCACCCCGCCGCCCGACTTGTGTCCGATAGCTCGAAGGTGCTCTT
CGAAACACGTAGACTCCGAGATTTTTTGGTTCGGTTGCTTGTCTTCGAGA
CATGGTTCGACCCCTTCACGGGGCTGACTCGCCATCGCGTGGCGGCCGCA
CCGCACACCCCTTTCTACCCGAACGCCAACAACAACCTTTCGGTTTTCAG
ATGAGAACGACGACGGCAAGATGCTGGCGCTGACCGTGAAGAAGAGGAGA
GCTGCTCGCGACAGGACTGCTTGGTGGAGCGGCGTGCTGGAGGGGGACGA
CAAGTGGGAGCCACAGCAGCCGACGAGCGCAGAACGGCAGCAGCCCTGAG
CCTC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig110:23500..27103+

>mRNA_S-firma_F_contig110.1333.1 ID=mRNA_S-firma_F_contig110.1333.1|Name=mRNA_S-firma_F_contig110.1333.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1554bp|location=Sequence derived from alignment at S-firma_F_contig110:23500..27103+ (Sphaerotrichia firma ET2_F female)
ATGAGACGCAACAAGCGGAAGCGTCAGGAGGACATCGACCGGCTCACGAA
GCTGAGGCACAACCTCAGAGACCTGCCCAAGCAGCGCCAGTGCCACCGCT
ACCGATGGACGCAGACGGAGACCACCTTCGACGTCGAGATACCCATGCTC
AAGGCCTGCACAGACGAGGACCTGTACCTCGTGGTGGACAGGGACCAGCT
GCAGGTTGCCATCAAGACGGACGAGTCGTTCGGGGCCATCACGATGAGAC
GCAACAAGCGGAAGCGTCAGGAGGACATCGACCGGCTCACGAAGCTGAGG
CACAACCTCAGAGACCTGCCCAAGCAGCGCCAGTGCCACCGCTACCGATG
GACGCAGACGGAGACCACCTTCGACGTCGAGATACCCATGCTCAAGGCCT
GCACAGACGAGGACCTGTACCTCGTGGTGGACAGGGACCAGCTGCAGGTT
GCCATCAAGACGGACGAGTCGTTCGGGGCCATCACGGGCGTTTTCCCGGG
TGACGTGGATGCCACAAGTTGCAGCTATCGGATCCACAGTCGTTTCAACG
AGCCCTACATCCACCTAGAAATCGTCAAGCTGACCGCCCCAGGGCGTTTT
CCCGGGTGACGTGGATGCCACAAGTTGCAGCTATCGGATCCACAGTCGTT
TCAACGAGCCCTACATCCACCTAGAAATCGTCAAGCTGACCGCCCCAGGG
ATGTACGAGTTCTGGCACGAGCTGCTACAGGGCGAGAAAGAGAGTCCTAC
CATCCGTTTCAAGGGAGAGACGCCGCGCTACAGCTGGAAGCAGAACGCCG
AGACAATAGAGGGATGTACGAGTTCTGGCACGAGCTGCTACAGGGCGAGA
AAGAGAGTCCTACCATCCGTTTCAAGGGAGAGACGCCGCGCTACAGCTGG
AAGCAGAACGCCGAGACAATAGAGTTGGAGATTCCCGTGCCGGATGACGT
GACGAAGCGAAAAACGACGCTCGAGCTGGACCCGGCGGGAGACCGGATGC
ACCTCTCCTTCGAAAACAGGCCGGACTTCGAGCCTCTGGAGGGGAAGTTT
AAGGATCTCATCAGCCCGCTTGACTCCGTGTGGATGCTGGTTGGAGATTC
CCGTGCCGGATGACGTGACGAAGCGAAAAACGACGCTCGAGCTGGACCCG
GCGGGAGACCGGATGCACCTCTCCTTCGAAAACAGGCCGGACTTCGAGCC
TCTGGAGGGGAAGTTTAAGGATCTCATCAGCCCGCTTGACTCCGTGTGGA
TGCTGGATGAGAACGACGACGGCAAGATGCTGGCGCTGACCGTGAAGAAG
AGGAGAGCTGCTCGCGACAGGACTGCTTGGTGGAGCGGCGTGCTGGAGGG
GGACGACAAGTGGGAGCCACAGCAGCCGACGAGCGCAGAACGGCAGCAGC
CCTGAATGAGAACGACGACGGCAAGATGCTGGCGCTGACCGTGAAGAAGA
GGAGAGCTGCTCGCGACAGGACTGCTTGGTGGAGCGGCGTGCTGGAGGGG
GACGACAAGTGGGAGCCACAGCAGCCGACGAGCGCAGAACGGCAGCAGCC
CTGA
back to top