mRNA_S-firma_F_contig10062.130.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10062.130.1
Unique NamemRNA_S-firma_F_contig10062.130.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: D7FN78_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FN78_ECTSI)

HSP 1 Score: 150 bits (379), Expect = 3.560e-41
Identity = 80/110 (72.73%), Postives = 93/110 (84.55%), Query Frame = 1
Query:    1 AVKKTRSKERARKTEYKAGREIVSKMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAAAAAA 330
            ++ K   +ERARK EYKAGRE+VSKMS+KD ARPKGPQSSYI+FYTEK+AS +AARP MSIT+I TAVGEAWR LSDE + PYTK+AE DR+RYE QLR IAR AA +AA
Sbjct:  328 SISKKLLEERARKAEYKAGRELVSKMSRKDSARPKGPQSSYIVFYTEKMASFKAARPGMSITDIATAVGEAWRRLSDEMKLPYTKKAEADRKRYEDQLRAIARSAATSAA 437          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: G8Y0V1_PICSO (Piso0_004944 protein n=2 Tax=Pichia sorbitophila (strain ATCC MYA-4447 / BCRC 22081 / CBS 7064 / NBRC 10061 / NRRL Y-12695) TaxID=559304 RepID=G8Y0V1_PICSO)

HSP 1 Score: 62.0 bits (149), Expect = 2.790e-10
Identity = 30/77 (38.96%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312
            KKDP  PK   S+Y+ F  E     RA  P +S  ++G  +GE W+ +S E ++PY  +AE D++RYE +    A+K
Sbjct:   13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGISFGQVGKLLGEKWKAMSSEDKTPYETKAEADKKRYEKEKAEYAKK 89          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A642UMP5_DIURU (HMG box domain-containing protein n=1 Tax=Diutina rugosa TaxID=5481 RepID=A0A642UMP5_DIURU)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-9
Identity = 29/79 (36.71%), Postives = 47/79 (59.49%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAA 318
            K+DP  PK   S+Y+ F  E     R+  P +S  ++G  +GE W+ L+ E+++PY  +AE D++RYE +    A+K A
Sbjct:   13 KRDPDAPKRSLSAYMFFANENRDVVRSENPGVSFGQVGKLLGEKWKALTSEEKTPYEAKAEADKKRYEKEKAEYAKKQA 91          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A367Y0M0_9ASCO (Non-histone chromosomal protein 6 n=1 Tax=Candida viswanathii TaxID=5486 RepID=A0A367Y0M0_9ASCO)

HSP 1 Score: 60.5 bits (145), Expect = 1.090e-9
Identity = 29/77 (37.66%), Postives = 45/77 (58.44%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312
            KKDP  PK   S+Y+ F  E     RA  P ++  ++G  +GE W+ L+ E ++PY  +AE D++RYE +    A+K
Sbjct:   13 KKDPDAPKRSLSAYMFFANENRDIVRAENPGITFGQVGKLLGEKWKALTPEDKTPYENKAEADKKRYEKEKSEYAKK 89          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1E3QVM9_9ASCO (HMG box domain-containing protein n=1 Tax=Babjeviella inositovora NRRL Y-12698 TaxID=984486 RepID=A0A1E3QVM9_9ASCO)

HSP 1 Score: 58.9 bits (141), Expect = 4.330e-9
Identity = 28/70 (40.00%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291
            KKDP  PK   S+Y+ F  E     RA  P ++  ++G  +GE W+ L+ E ++PY ++AE D++RYE Q
Sbjct:   10 KKDPNAPKRSLSAYMFFANENRDIVRAENPGVTFGQLGKLLGEKWKSLTPEDKTPYDQKAEKDKKRYEVQ 79          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1I8AHZ8_9BILA (Uncharacterized protein n=1 Tax=Steinernema glaseri TaxID=37863 RepID=A0A1I8AHZ8_9BILA)

HSP 1 Score: 60.8 bits (146), Expect = 6.560e-9
Identity = 29/76 (38.16%), Postives = 46/76 (60.53%), Query Frame = 1
Query:   73 KMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRT 300
            K +KKDP  PK   S++  F  +K +  +A  PD  + ++   +G+ W+GLS+E RS Y K+A  D+ RY  ++RT
Sbjct:   87 KRTKKDPNAPKRALSAFFFFSHDKRSEVQAKHPDWKVGQVAQELGKFWKGLSEEDRSIYEKKAAEDKERYAEEMRT 162          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: NHP6_YARLI (Non-histone chromosomal protein 6 n=4 Tax=Yarrowia TaxID=4951 RepID=NHP6_YARLI)

HSP 1 Score: 57.8 bits (138), Expect = 1.620e-8
Identity = 26/70 (37.14%), Postives = 44/70 (62.86%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291
            KKDP  PK   S+Y+ F  +   + RA  P ++  ++G A+GE W+ L+D ++ PY ++A  D++RYE +
Sbjct:   19 KKDPNAPKRALSAYMFFANDNRDAIRADNPGIAFGQVGKALGEKWKTLTDAEKVPYEEKATADKKRYEDE 88          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A6G1G513_9PEZI (Nucleosome binding protein n=1 Tax=Eremomyces bilateralis CBS 781.70 TaxID=1392243 RepID=A0A6G1G513_9PEZI)

HSP 1 Score: 57.8 bits (138), Expect = 1.700e-8
Identity = 26/70 (37.14%), Postives = 43/70 (61.43%), Query Frame = 1
Query:   82 KKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQ 291
            KKDP  PK   S+Y+ F  +     R   P +   ++G A+GE W+ L+D+ ++PY  +A+VD++RYE +
Sbjct:   20 KKDPNAPKRGLSAYMFFANDNRDKVREDNPGIKFGDVGKALGEKWKELTDKDKAPYEAKAKVDKKRYEDE 89          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1J1GM50_PLAGA (HMG box domain-containing protein n=27 Tax=Plasmodiidae TaxID=1639119 RepID=A0A1J1GM50_PLAGA)

HSP 1 Score: 55.8 bits (133), Expect = 8.260e-8
Identity = 27/83 (32.53%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   70 SKMSKKDPARPKGPQSSYILFYTEKVASARAARPDMS--ITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARK 312
            +K  KKDP  PK   S+Y+ +  +K       +P+++  + ++G  +GEAW  LS  ++SPY K+A++D+ RY  ++    +K
Sbjct:   14 NKKKKKDPLAPKRALSAYMFYVKDKRLEIIKEKPELAKDVAQVGKLIGEAWGKLSAAQKSPYEKKAQLDKARYSKEIEEYRKK 96          
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Match: A0A1I8CM22_9BILA (Uncharacterized protein n=1 Tax=Rhabditophanes sp. KR3021 TaxID=114890 RepID=A0A1I8CM22_9BILA)

HSP 1 Score: 57.8 bits (138), Expect = 9.840e-8
Identity = 29/83 (34.94%), Postives = 49/83 (59.04%), Query Frame = 1
Query:   73 KMSKKDPARPKGPQSSYILFYTEKVASARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRTIARKAAA 321
            K +KKDP  PK   S++  F  E+    + A  D  + ++   +G+ W+GLS+E+RS Y KRA  D+ RY  ++++   +A+A
Sbjct:   87 KRAKKDPNAPKRALSAFFFFSNERRPEVQRAHTDWKVGQVAQELGKFWKGLSEEERSIYEKRASDDKERYAEEMKSFRGEASA 169          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10062.130.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FN78_ECTSI3.560e-4172.73Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
G8Y0V1_PICSO2.790e-1038.96Piso0_004944 protein n=2 Tax=Pichia sorbitophila (... [more]
A0A642UMP5_DIURU1.090e-936.71HMG box domain-containing protein n=1 Tax=Diutina ... [more]
A0A367Y0M0_9ASCO1.090e-937.66Non-histone chromosomal protein 6 n=1 Tax=Candida ... [more]
A0A1E3QVM9_9ASCO4.330e-940.00HMG box domain-containing protein n=1 Tax=Babjevie... [more]
A0A1I8AHZ8_9BILA6.560e-938.16Uncharacterized protein n=1 Tax=Steinernema glaser... [more]
NHP6_YARLI1.620e-837.14Non-histone chromosomal protein 6 n=4 Tax=Yarrowia... [more]
A0A6G1G513_9PEZI1.700e-837.14Nucleosome binding protein n=1 Tax=Eremomyces bila... [more]
A0A1J1GM50_PLAGA8.260e-832.53HMG box domain-containing protein n=27 Tax=Plasmod... [more]
A0A1I8CM22_9BILA9.840e-834.94Uncharacterized protein n=1 Tax=Rhabditophanes sp.... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10062contigS-firma_F_contig10062:13..980 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FN78
PFAMsHMG_box
Max annot lvl2759|Eukaryota
Evalue5.84e-42
EggNOG OGs2EXFV@1|root,2SZ4V@2759|Eukaryota
Descriptionhigh mobility group
COG categoryB
Hectar predicted targeting categoryother localisation
Exons3
Model size348
Cds size348
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10062.130.1prot_S-firma_F_contig10062.130.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10062 13..980 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815531.157696-CDS-S-firma_F_contig10062:12..1101622815531.157696-CDS-S-firma_F_contig10062:12..110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 13..110 +
1696949393.3876796-CDS-S-firma_F_contig10062:12..1101696949393.3876796-CDS-S-firma_F_contig10062:12..110Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 13..110 +
1622815531.181324-CDS-S-firma_F_contig10062:521..6091622815531.181324-CDS-S-firma_F_contig10062:521..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 522..609 +
1696949393.4230087-CDS-S-firma_F_contig10062:521..6091696949393.4230087-CDS-S-firma_F_contig10062:521..609Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 522..609 +
1622815531.1947334-CDS-S-firma_F_contig10062:818..9801622815531.1947334-CDS-S-firma_F_contig10062:818..980Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 819..980 +
1696949393.4385054-CDS-S-firma_F_contig10062:818..9801696949393.4385054-CDS-S-firma_F_contig10062:818..980Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10062 819..980 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10062.130.1

>prot_S-firma_F_contig10062.130.1 ID=prot_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=116bp
AVKKTRSKERARKTEYKAGREIVSKMSKKDPARPKGPQSSYILFYTEKVA
SARAARPDMSITEIGTAVGEAWRGLSDEKRSPYTKRAEVDRRRYEGQLRT
IARKAAAAAAAAPAR*
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mRNA from alignment at S-firma_F_contig10062:13..980+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10062.130.1 ID=mRNA_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=968bp|location=Sequence derived from alignment at S-firma_F_contig10062:13..980+ (Sphaerotrichia firma ET2_F female)
GCCGTGAAGAAGACCCGGTCGAAGGAGCGCGCCCGCAAGACGGAGTACAA GGCCGGAAGGGAGATCGTGTCCAAGATGTCCAAGAAAGACCCGGCCAGGT AGGTGACGGGGCGGCCACAGCTAGTGCACGCAGCGCCGAACCCTTGGTGC ACACAGAATGTCGCGTACCGATGTCCTTGGCCACGATGGAGGCATAGATT TCTGCCACGACCTTGTTGTGTTGCTGTTGTTGTTGTTCGTGTGGCGAAGC CGGCTTATATTTAGCCAGGAGGTCGCCGAGCCTTGGTTAAAGTGGCAGGC CACCGTATGAGAGGGCCTTGAGGCAAATGTGAGTATTCCCCTTTTTTGGA CGTTCGTTTGTGGTGGTGGACATCATCATCATCGATACCAAGGCGGTTCG ACCCCATGAACGAGTATGTATTTCTGTCTTCCATCACCATTTTCATACTG TATTCCCCACTGCCCGGTGCAATCTCGGGGCTCTGGACACCTCTTGTGCT GGCGTCTAGGCCGAAGGGCCCCCAGAGCTCGTACATCCTGTTCTACACGG AGAAGGTGGCCTCCGCCAGGGCAGCGAGACCCGACATGAGCATCACGGTA GGTCCTTGCGCCACTTCACCCCGCCGCCTTACATTGGCACGACTGAACCA ACGCTTCAATTGTGGCAGTGCATACCATCGAGAGGAATGCTGTTGTTGTT GTTAGCGGTGGTGGTGGTGGTGGTAGTGGTGGTGGTGGTGTGCTTGATGT AAGCCCTTGCTGATTTAAATGGCGACCTTTGTACGAAAACGTCTTGCTTG CGGCAGGAAATTGGGACGGCCGTGGGCGAGGCCTGGCGCGGTCTGTCCGA CGAGAAAAGAAGCCCCTACACCAAGCGGGCCGAGGTCGACCGCAGGCGCT ACGAGGGCCAACTGCGCACCATCGCGCGGAAGGCCGCCGCCGCCGCCGCC GCTGCCCCCGCCCGTTGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10062:13..980+

>mRNA_S-firma_F_contig10062.130.1 ID=mRNA_S-firma_F_contig10062.130.1|Name=mRNA_S-firma_F_contig10062.130.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=696bp|location=Sequence derived from alignment at S-firma_F_contig10062:13..980+ (Sphaerotrichia firma ET2_F female)
GCCGTGAAGAAGACCCGGTCGAAGGAGCGCGCCCGCAAGACGGAGTACAA
GGCCGGAAGGGAGATCGTGTCCAAGATGTCCAAGAAAGACCCGGCCAGGC
CGTGAAGAAGACCCGGTCGAAGGAGCGCGCCCGCAAGACGGAGTACAAGG
CCGGAAGGGAGATCGTGTCCAAGATGTCCAAGAAAGACCCGGCCAGGCCG
AAGGGCCCCCAGAGCTCGTACATCCTGTTCTACACGGAGAAGGTGGCCTC
CGCCAGGGCAGCGAGACCCGACATGAGCATCACGGCCGAAGGGCCCCCAG
AGCTCGTACATCCTGTTCTACACGGAGAAGGTGGCCTCCGCCAGGGCAGC
GAGACCCGACATGAGCATCACGGAAATTGGGACGGCCGTGGGCGAGGCCT
GGCGCGGTCTGTCCGACGAGAAAAGAAGCCCCTACACCAAGCGGGCCGAG
GTCGACCGCAGGCGCTACGAGGGCCAACTGCGCACCATCGCGCGGAAGGC
CGCCGCCGCCGCCGCCGCTGCCCCCGCCCGTTGAGAAATTGGGACGGCCG
TGGGCGAGGCCTGGCGCGGTCTGTCCGACGAGAAAAGAAGCCCCTACACC
AAGCGGGCCGAGGTCGACCGCAGGCGCTACGAGGGCCAACTGCGCACCAT
CGCGCGGAAGGCCGCCGCCGCCGCCGCCGCTGCCCCCGCCCGTTGA
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