mRNA_S-firma_F_contig10920.1227.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10920.1227.1
Unique NamemRNA_S-firma_F_contig10920.1227.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10920.1227.1 vs. uniprot
Match: A0A6H5K7D8_9PHAE (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7D8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 1.050e-9
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 2 
Query:  134 VRVCLSLGGCRWADDISLGNRRQASA--RDAGVWVTAAAGATVRQLATEAEKQILDRHGLSVATGLVL 331
            VRV LS  GC+WADD+ L +R QAS    DAG+ V   A  TVR+LAT+AE+ +L++ GL++AT LVL
Sbjct:   23 VRVSLSRRGCKWADDVVLKDRDQASGLGSDAGLGVYFKASWTVRELATKAEELLLEKQGLALATALVL 90
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10920.1227.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7D8_9PHAE1.050e-954.41CobW C-terminal domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10920contigS-firma_F_contig10920:2899..4659 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7G996
PFAMsCobW_C,cobW
Max annot lvl2759|Eukaryota
Evalue1.01e-12
EggNOG OGsCOG0523@1|root,KOG2743@2759|Eukaryota
DescriptionATP binding
COG categoryF
Hectar predicted targeting categoryother localisation
Exons2
Model size332
Cds size267
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10920.1227.1prot_S-firma_F_contig10920.1227.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10920 2963..4659 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6797626-UTR-S-firma_F_contig10920:2898..29621622815636.6797626-UTR-S-firma_F_contig10920:2898..2962Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10920 2899..2962 +
1696949470.1259093-UTR-S-firma_F_contig10920:2898..29621696949470.1259093-UTR-S-firma_F_contig10920:2898..2962Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10920 2899..2962 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815636.6955326-CDS-S-firma_F_contig10920:2962..31271622815636.6955326-CDS-S-firma_F_contig10920:2962..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 2963..3127 +
1696949470.1457508-CDS-S-firma_F_contig10920:2962..31271696949470.1457508-CDS-S-firma_F_contig10920:2962..3127Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 2963..3127 +
1622815636.707103-CDS-S-firma_F_contig10920:4557..46591622815636.707103-CDS-S-firma_F_contig10920:4557..4659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 4558..4659 +
1696949470.156024-CDS-S-firma_F_contig10920:4557..46591696949470.156024-CDS-S-firma_F_contig10920:4557..4659Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10920 4558..4659 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10920.1227.1

>prot_S-firma_F_contig10920.1227.1 ID=prot_S-firma_F_contig10920.1227.1|Name=mRNA_S-firma_F_contig10920.1227.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp
MQLNQGDGVDSGGGEAGPAGEASVRVCLSLGGCRWADDISLGNRRQASAR
DAGVWVTAAAGATVRQLATEAEKQILDRHGLSVATGLVL
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mRNA from alignment at S-firma_F_contig10920:2899..4659+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10920.1227.1 ID=mRNA_S-firma_F_contig10920.1227.1|Name=mRNA_S-firma_F_contig10920.1227.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1761bp|location=Sequence derived from alignment at S-firma_F_contig10920:2899..4659+ (Sphaerotrichia firma ET2_F female)
AAACACGCCATTGTTGCGTGGGCGCAGTTCTCGATAACAGGGTGGTCAGA
GAGGCAGACAGGGCATGCAGCTGAACCAAGGAGATGGCGTCGATAGTGGC
GGGGGCGAGGCTGGGCCCGCAGGGGAAGCGAGTGTCCGGGTGTGCCTGAG
CCTCGGCGGGTGCAGGTGGGCGGATGACATCAGCTTAGGCAACCGTCGGC
AAGCTTCGGCGAGGGACGCCGGGGTGTGGGTGAGCGAAACCTCTCTTGTC
GCCGGGCGCCTCTGCCCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT
TGTTCTCTCCCAGCAAGCGCGTCGTGGTAGGGCTGGTTCTGTGTGGAACC
ACATGCTTGTGCATAATTTGGTTGAGACGTCCATCTAGTCTAGGTATGAT
AGTCTAATCGAGATAGCCGCATCGGCGGCCCTTACCTTGCACTTTCAGTA
CTTGTAGCAGTAGCGGAGAGGGTCGCTGTGTTCCGGGCCCCTCCCCCGAA
GCAGCAGCGGCTAAAGAGCCACGTGCTGTTGTGCTGCTTTGGGGGTGCGC
TGCGCTGCTTGCGGCAGGCTCTCGCCGCCCGCCCGCCCGTGAGTTGTCAC
GTGTGCAGGTGGGGTTGATTTGCTGCGCGCGCACGCGCACATGCGGCGCA
GTTTTGGTCTCGAGCAAACGGCAGCGAACGCGCATATTTGTATGTATGAT
ATGTTTTGCCAATCACACCGTCGGCACACCCATCAGCGGTGCTGCAGCAC
AATCGATAATCACTAGAGCCTATTGTAAAGAAGGTTCGGTGGAGGGGTGG
ACATGTGTTTCCCGCCGCGTTGTCGACCACTACAGATAGACTATACTCCG
TACTAGATTTTTAGCGGTTTTCCGGCAGCATTACATGTAGGACAGCAGCA
GCAGCAGCGCTGCTGCTGTTCCGTGGTTTTTCCTCACGTGTGTCCTCGTG
GGGAATGCAAAATAGAGACAGCGCGAGCCGTCGACCTTCATGGGATACAG
CGGCTGATTCCAGCAGCGGGAGGGTAGCAGCAGCAGCAGGGCAGCAACAT
TTTATTTCACGGAGCATCGTCTGACGTCACCCGCACCCGATTCCAGGCCA
TGAGCCATCATCCTGCAGCGTTGTACTTTCTCCCGAAATGTTTGCCGAGT
CTAGTCGAGTCTAGAGTAACATACAGCCGTCGTAGTAGCGCTGATGCAAC
ATCTTGTTAGGCGAAGTACAACGGTCTTACAAGCACATGGCCCCGATCTG
TTGGTCTGGAGATGGCTTTTGTCGAGGGGGGTTCGGTTTTATCTTGGACA
GGCCGCAGTGTTCCCCGGTGTGGTGCTATTGCTGCAGTGGCGGGCAAGGA
GTGTGATGTTGCCTACTGCTGTGCATGCAGTGTGCGCGCAAGTGTCATGC
GTCGCCCGCACGTGAGAAGGCATGTCCGTCGCTACGGGCGCGTTGCTGCC
ATCGCGCGTTCGGCGAAAGGCAACGAAGCGAAAGAAAGTTGTTGCCCACA
CACGCACCCCTCTCTCCCTTGCCCATCGGCGAGGCAAGGTCACAAACTTG
GCAACGCACGGCGTTTGTTGTGCATCAGCCCCCCCCTGGCCTGCCTAACC
CCCGCCGAAACAAAAACACCCGAATGGTGCTCTGACGATTCACGGTGCCG
CTCGCTCAGGTCACCGCGGCGGCCGGCGCAACAGTCCGGCAGCTGGCCAC
GGAGGCGGAGAAGCAGATCCTCGACAGGCACGGGCTCAGTGTGGCGACGG
GGTTGGTGCTA
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Coding sequence (CDS) from alignment at S-firma_F_contig10920:2899..4659+

>mRNA_S-firma_F_contig10920.1227.1 ID=mRNA_S-firma_F_contig10920.1227.1|Name=mRNA_S-firma_F_contig10920.1227.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=534bp|location=Sequence derived from alignment at S-firma_F_contig10920:2899..4659+ (Sphaerotrichia firma ET2_F female)
ATGCAGCTGAACCAAGGAGATGGCGTCGATAGTGGCGGGGGCGAGGCTGG
GCCCGCAGGGGAAGCGAGTGTCCGGGTGTGCCTGAGCCTCGGCGGGTGCA
GGTGGGCGGATGACATCAGCTTAGGCAACCGTCGGCAAGCTTCGGCGAGG
GACGCCGGGGTGTGGATGCAGCTGAACCAAGGAGATGGCGTCGATAGTGG
CGGGGGCGAGGCTGGGCCCGCAGGGGAAGCGAGTGTCCGGGTGTGCCTGA
GCCTCGGCGGGTGCAGGTGGGCGGATGACATCAGCTTAGGCAACCGTCGG
CAAGCTTCGGCGAGGGACGCCGGGGTGTGGGTCACCGCGGCGGCCGGCGC
AACAGTCCGGCAGCTGGCCACGGAGGCGGAGAAGCAGATCCTCGACAGGC
ACGGGCTCAGTGTGGCGACGGGGTTGGTGCTAGTCACCGCGGCGGCCGGC
GCAACAGTCCGGCAGCTGGCCACGGAGGCGGAGAAGCAGATCCTCGACAG
GCACGGGCTCAGTGTGGCGACGGGGTTGGTGCTA
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