prot_S-firma_F_contig10920.1227.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10920.1227.1
Unique Nameprot_S-firma_F_contig10920.1227.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length89
Homology
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BLAST of mRNA_S-firma_F_contig10920.1227.1 vs. uniprot
Match: A0A6H5K7D8_9PHAE (CobW C-terminal domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K7D8_9PHAE)

HSP 1 Score: 64.3 bits (155), Expect = 4.840e-10
Identity = 37/68 (54.41%), Postives = 49/68 (72.06%), Query Frame = 0 
Query:   24 VRVCLSLGGCRWADDISLGNRRQASA--RDAGVWVTAAAGATVRQLATEAEKQILDRHGLSVATGLVL 89
            VRV LS  GC+WADD+ L +R QAS    DAG+ V   A  TVR+LAT+AE+ +L++ GL++AT LVL
Sbjct:   23 VRVSLSRRGCKWADDVVLKDRDQASGLGSDAGLGVYFKASWTVRELATKAEELLLEKQGLALATALVL 90
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10920.1227.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5K7D8_9PHAE4.840e-1054.41CobW C-terminal domain-containing protein n=2 Tax=... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10920contigS-firma_F_contig10920:2963..4659 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10920.1227.1mRNA_S-firma_F_contig10920.1227.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10920 2899..4659 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10920.1227.1 ID=prot_S-firma_F_contig10920.1227.1|Name=mRNA_S-firma_F_contig10920.1227.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=89bp
MQLNQGDGVDSGGGEAGPAGEASVRVCLSLGGCRWADDISLGNRRQASAR
DAGVWVTAAAGATVRQLATEAEKQILDRHGLSVATGLVL
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