mRNA_S-firma_F_contig108.1070.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig108.1070.1
Unique NamemRNA_S-firma_F_contig108.1070.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig108.1070.1 vs. uniprot
Match: D8LKY9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKY9_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 1.820e-30
Identity = 73/88 (82.95%), Postives = 75/88 (85.23%), Query Frame = 3 
Query:  108 MKDKLFFTPEAKRARALESMVSAAERSNLLQEGAAAAGAEHMRRLELADAERLGMEKEEHALRMAIGKSALALLDKMAGEPPLQLSPP 371
            M    F +PEAKRAR L+SMVSAAERSNLLQE    AGAEHMRRLELADAERL MEKEEHALRMAIGKSALALL KMAGEPP QLSPP
Sbjct:    1 MNKSYFNSPEAKRARVLDSMVSAAERSNLLQE----AGAEHMRRLELADAERLAMEKEEHALRMAIGKSALALLSKMAGEPPPQLSPP 84
[Close]
BLAST of mRNA_S-firma_F_contig108.1070.1 vs. uniprot
Match: A0A6H5L718_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L718_9PHAE)

HSP 1 Score: 108 bits (270), Expect = 7.850e-22
Identity = 68/83 (81.93%), Postives = 71/83 (85.54%), Query Frame = 3 
Query:  123 FFTPEAKRARALESMVSAAERSNLLQEGAAAAGAEHMRRLELADAE-RLGMEKEEHALRMAIGKSALALLDKMAGEPPLQLSP 368
            F +PEAKRAR L+S+VSAAERS LLQE    AGAEHMRRL LADAE RL MEKEEHALRMAIGKSALALL KMAGEPP QLSP
Sbjct:  301 FNSPEAKRARVLDSIVSAAERSILLQE----AGAEHMRRLVLADAEQRLTMEKEEHALRMAIGKSALALLSKMAGEPPPQLSP 379
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig108.1070.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LKY9_ECTSI1.820e-3082.95Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5L718_9PHAE7.850e-2281.93Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig108contigS-firma_F_contig108:11257..13701 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-11_006070.1
Exons2
Model size1770
Cds size360
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig108.1070.1prot_S-firma_F_contig108.1070.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig108 12599..13633 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.353136-UTR-S-firma_F_contig108:11256..125981622815622.353136-UTR-S-firma_F_contig108:11256..12598Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 11257..12598 -
1696949460.2629025-UTR-S-firma_F_contig108:11256..125981696949460.2629025-UTR-S-firma_F_contig108:11256..12598Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 11257..12598 -
1622815622.385858-UTR-S-firma_F_contig108:13633..137011622815622.385858-UTR-S-firma_F_contig108:13633..13701Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 13634..13701 -
1696949460.2945142-UTR-S-firma_F_contig108:13633..137011696949460.2945142-UTR-S-firma_F_contig108:13633..13701Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig108 13634..13701 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815622.3639576-CDS-S-firma_F_contig108:12598..127661622815622.3639576-CDS-S-firma_F_contig108:12598..12766Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 12599..12766 -
1696949460.2733266-CDS-S-firma_F_contig108:12598..127661696949460.2733266-CDS-S-firma_F_contig108:12598..12766Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 12599..12766 -
1622815622.3753982-CDS-S-firma_F_contig108:13441..136331622815622.3753982-CDS-S-firma_F_contig108:13441..13633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 13442..13633 -
1696949460.2833574-CDS-S-firma_F_contig108:13441..136331696949460.2833574-CDS-S-firma_F_contig108:13441..13633Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig108 13442..13633 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig108.1070.1

>prot_S-firma_F_contig108.1070.1 ID=prot_S-firma_F_contig108.1070.1|Name=mRNA_S-firma_F_contig108.1070.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=120bp
MVPRKKPGRKPGKMKDKLFFTPEAKRARALESMVSAAERSNLLQEGAAAA
GAEHMRRLELADAERLGMEKEEHALRMAIGKSALALLDKMAGEPPLQLSP
PEEPVPPPQAPHESAGSVV*
back to top

mRNA from alignment at S-firma_F_contig108:11257..13701-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig108.1070.1 ID=mRNA_S-firma_F_contig108.1070.1|Name=mRNA_S-firma_F_contig108.1070.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2445bp|location=Sequence derived from alignment at S-firma_F_contig108:11257..13701- (Sphaerotrichia firma ET2_F female)
CCTTGTACAATAACGGCGGCGGCGTCGTCGGTGGTGTCGGTGTCGGTGTC
GGCATCGGCGTCGGCGCAATGGTTCCCAGAAAGAAGCCCGGGCGCAAGCC
GGGGAAGATGAAGGACAAGCTGTTCTTCACCCCGGAGGCGAAGCGGGCGC
GGGCCCTGGAGTCGATGGTGTCGGCGGCGGAGCGGTCGAACTTGCTGCAG
GAGGGGGCTGCGGCGGCCGGCGCGGAGCACATGCGGAGGCTAGAGCTCGC
GGACGCTGAGGTGTGGTTCCGCAGACATAAAGATCGCAGTGTATTCCCAC
ACGCCCAAGCTTTGTTTCTTGTCCTGTTGGCCTGGGTGGGCATGTTGGTG
GGAATATTTGTTGGAATCGCCCCCCTCCATTCGTTCTCAGCCAAACGTCA
CGCCGTAGTGTCATTCTCCCCCCCGCGCCCCGCGTTGTCTCTCTGTCTCT
TCTGGGCGTATATCTGTTCTGCGCTCGTGCTGAAAGATTCCTTGGCAGTT
AACCTTCAAGCTCTTGTCTTGTGTGTTGTTGTCGGTTGCATTGGTTCGTG
TAGGGCAACCTTGCTCTGAAATGCTGCGGACTTGCGGACAGTGCATTTCC
TACTGAAAAGTCTCCCACAGACCACAGACAGCCGCCGTGCAACGCCTTTG
CGTGGCGTGCTAAGGCGCTTTCCCGAAGTGCTGGATAGTCTCTGGGTAGT
CTATTCGTCGTTCGCCTCATATTGACTTTGGTGAAACCCCTGACACCGCT
GCTGATTCCAAAGCGTACGGCCTGCAGCATGGCATACGACATGCTTGATG
TGACTCGGTTCGCCGAAGTAGACTACTTCGTTTAGGTGACTTCAGTGGTT
TCGCTTGTTACGAACATGGGGCCTCCCACCGTTACTGCCACCATCACTCT
AAACATGAAACCCATCGATCGCTTCGGTGGCGCAGCGGCTGGGAATGGAG
AAGGAGGAACACGCTTTGCGCATGGCGATAGGCAAGTCAGCTCTGGCGCT
ACTCGACAAGATGGCCGGAGAGCCACCGCTTCAACTCTCTCCGCCGGAAG
AACCAGTACCACCGCCACAAGCGCCGCACGAGTCGGCGGGGTCTGTGGTC
TGAATGCCGCTGCTACATAGCACGGCCGCTTCTGCCGAGTGTTCGCCCGT
ATCGTATGCGAGACGTCTCTTTGCTTTGGAGGGGCTAATTTCTGTAAGCT
CATTGTGTAATTGTATGTTTTGCCGCGAAGGGTTTTTGTGTCCCTTCTGT
TTTCAGGGTGTAGGCGCGCTAACTTGCTAAATATTTAACAGGGTTCGTTT
CTTGGCAGTGTGGCGTCGTCGTTGGAACTTCGTACGTGTTTCCACCAACG
AGCAGTGTTTTGGCGTGGCATTTTCCTCCCAGTTTTTAGTTGCTGTGTTT
TGGCGGGAGTACCTCGTTCTTCTGGAGGCGCTTTTGGCCCCTCCGCCCAC
AGCTGCTGCGCAACTTTCTTGTACATGATTTACGCGAATGAAGTCTGTGT
TGTTTTTTGGCGCGCTGTGGTCGAGTCAGCTGCCATGCCGGCTGTAGTCA
CGTGGACACGTGGTTTCCGGTGTGACCACTTTGGACGGAAATGCCTCCTT
CCCAGTACTGAAGAGATTTGGTAGATTGGCTCCGAGGTGGAGGAGACTTG
GTGAGGTGTTGCGAGATAGCCAAACGTTTCTATGCGAGCGAGGGCACTTT
CCGGGGTCAGTTTTTTTTCTGCGCTGGTCGCGCTGCATGTAGTGACACAA
AACGCTACAGCCGGCCACGCGTTGGCACTTGACTGTATGATACGTACGGC
AGGAGATGCTGCCATGGGTGTTCACTGGCTGTACCTTTCTTTCCTGAGGG
TTGGTGTGTTGGGTCTTACACGACATGTCCCAATCCGTTCTCTGCGTCGA
TTTGCCAAGTTCCGGCTGCGTTGTACACTGTTTCAATCCGAATTTCAGGA
GAGTTTTCAGGCGAAAGCGCAAGTAGTGCAAGGACCTCTGCTCTGTCTGA
GTAGAATTTTGTGTCCGACAACATCATCATGGGGTGGCTGTGCCTTGTGG
GTGGTCGCGGCAAGCCTGTCGCGCCCAGAGACCAATCTAAGAGTGGGGGT
GTGACCGCCAATGTATTGTGACGAGTTGCAAGAACAAGTAGAGAGGTTCA
CAAAACATACCTGTTGCGGGTATACTGCTGTTGGCGGGGACCCCACTTGT
GCTGATAATCTAGAAATGAAGTGGTGCTTTTTGGCAGTTGTTTCAGTTGT
CGAGACCCCAAGGAGGCGTGCGCGGGTAGTTACACTCTTTGTCGTGGGAG
AGAAGCCCAGACTATGTTGATTTGCATACGAGTATAATTTTAGGTTGGAG
AATGGGAAGCAAAGAAAGGTATATATTGGAAATCAGTCCCAGCACTGCAA
GTCATCCAAGTCAGCCGCGCAACAGCCCAAGGGAGACCAACCCAG
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig108:11257..13701-

>mRNA_S-firma_F_contig108.1070.1 ID=mRNA_S-firma_F_contig108.1070.1|Name=mRNA_S-firma_F_contig108.1070.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=720bp|location=Sequence derived from alignment at S-firma_F_contig108:11257..13701- (Sphaerotrichia firma ET2_F female)
ATGGTTCCCAGAAAGAAGCCCGGGCGCAAGCCGGGGAAGATGAAGGACAA
GCTGTTCTTCACCCCGGAGGCGAAGCGGGCGCGGGCCCTGGAGTCGATGG
TGTCGGCGGCGGAGCGGTCGAACTTGCTGCAGGAGGGGGCTGCGGCGGCC
GGCGCGGAGCACATGCGGAGGCTAGAGCTCGCGGACGCTGAGATGGTTCC
CAGAAAGAAGCCCGGGCGCAAGCCGGGGAAGATGAAGGACAAGCTGTTCT
TCACCCCGGAGGCGAAGCGGGCGCGGGCCCTGGAGTCGATGGTGTCGGCG
GCGGAGCGGTCGAACTTGCTGCAGGAGGGGGCTGCGGCGGCCGGCGCGGA
GCACATGCGGAGGCTAGAGCTCGCGGACGCTGAGCGGCTGGGAATGGAGA
AGGAGGAACACGCTTTGCGCATGGCGATAGGCAAGTCAGCTCTGGCGCTA
CTCGACAAGATGGCCGGAGAGCCACCGCTTCAACTCTCTCCGCCGGAAGA
ACCAGTACCACCGCCACAAGCGCCGCACGAGTCGGCGGGGTCTGTGGTCT
GACGGCTGGGAATGGAGAAGGAGGAACACGCTTTGCGCATGGCGATAGGC
AAGTCAGCTCTGGCGCTACTCGACAAGATGGCCGGAGAGCCACCGCTTCA
ACTCTCTCCGCCGGAAGAACCAGTACCACCGCCACAAGCGCCGCACGAGT
CGGCGGGGTCTGTGGTCTGA
back to top