mRNA_S-firma_F_contig10796.1063.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10796.1063.1
Unique NamemRNA_S-firma_F_contig10796.1063.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10796.1063.1 vs. uniprot
Match: D7FKS0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKS0_ECTSI)

HSP 1 Score: 284 bits (726), Expect = 7.770e-90
Identity = 153/230 (66.52%), Postives = 178/230 (77.39%), Query Frame = 2 
Query:  386 VCTFTSIQVISAPISQYDVENGRSACTCICLEAAMQILRGYADGV-WAGTSESVTNYVTVGVSNYEAVAAAGTLSVEHTSVAEILANVARYRDALQPATAQGTHQGLLGSDNSIASILREIGGARQEKSKPVAVAITKPPETVVCFLAPE----GSSSAVGAPSS--WLLFDSHPRPQLGLTGASVRSFGGEDALFEALNDTFPSFDLRAEDNVMTSMYNMFDCIPMSLK 1054
            V   T IQV+SA ISQYDV+NGRS+CTCICLEA++ +L    DG  WAG+ + V N V  GV+ YEAVAA GTL+VEHTSVAEILA VARY DALQPAT + THQGLLGSD SIA +L EI G R+++S+PVAV ITKPPETVVCFL  E    G ++  GAPS+  WLLFDSHPRPQ GL GASVR F  E+AL EALND FP+ DL   D+VM+SMYNMFDC+P+SLK
Sbjct:    7 VTPHTLIQVVSASISQYDVQNGRSSCTCICLEASLTVLERLGDGTAWAGSPDDVANCVNTGVAMYEAVAATGTLAVEHTSVAEILATVARYHDALQPATDKVTHQGLLGSDTSIARVLGEIRGERRDQSRPVAVVITKPPETVVCFLPAESQAEGGAATTGAPSTRQWLLFDSHPRPQHGLVGASVRCFAAEEALVEALNDIFPAVDLGT-DSVMSSMYNMFDCVPLSLK 235
[Close]
BLAST of mRNA_S-firma_F_contig10796.1063.1 vs. uniprot
Match: K0R0Z2_THAOC (UBA domain-containing protein n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0R0Z2_THAOC)

HSP 1 Score: 92.4 bits (228), Expect = 4.050e-17
Identity = 79/225 (35.11%), Postives = 112/225 (49.78%), Query Frame = 2 
Query:  398 TSIQVISAPISQYDVENGRSACTCICLEAAMQILRGYADGVWAGTSESVTNYVTVGVSNYEAVAAAGTLSVEHTSVAEILANV---ARYRDALQPATAQG--THQGLLGS--DNSIAS--ILREIGGARQEKSKPVAVAITKPPETVVCFLAPEGSSSAVGAPSSWLLFDSHPRPQLGLTGASVRSFGGEDALFEALNDTFPSFDLRAE-DNVMTSMYNMFDCIP 1042
            T+ +++ + +SQY   +G+SACT I L  A+  L G    V   T+E + + V  G+  Y  + AA   S EH+SV E+LA V   A + + L P T  G    QGLL +  DN +    +L +        +  VA  ITKPPET++  L P G S   G P  ++L DSHPRP L  +G+        D L E+    F   +L  +   +M  MYN FD  P
Sbjct:   74 TTARLVHSSLSQYSDPSGKSACTSIALNLAVNFLNGEQTAV---TAEYLGSSVLEGIQMYSELHAASGAS-EHSSVEELLAAVNLSAVHSEKLAPMTMLGGSPRQGLLSNARDNPMGLDVVLSQCQRDAAHVNSYVAAVITKPPETILVLLPPRGQS---GLP--YILVDSHPRPNLCASGSYALLNSDFDGLLESSRQVFSPTELGPDVPELMAMMYNSFDVYP 289
[Close]
BLAST of mRNA_S-firma_F_contig10796.1063.1 vs. uniprot
Match: A0A7S2UJ74_9STRA (Hypothetical protein n=1 Tax=Attheya septentrionalis TaxID=420275 RepID=A0A7S2UJ74_9STRA)

HSP 1 Score: 74.3 bits (181), Expect = 6.540e-11
Identity = 72/238 (30.25%), Postives = 95/238 (39.92%), Query Frame = 2 
Query:  410 VISAPISQYDVENGRSACTCICLEAAMQIL--------------------RGYADGVWAGTSESVTNYVTVGVSNYEAVAAAGTLSVEHTSVAEILANVARYRDALQPATAQGTHQGLLGSDN-SIASILREIGGARQEKSKPV-----AVAITKPPETVVCFLAPEGSSSAVGAPSSWLLFDSHPRPQLGLTGASVRSFGGEDALFEALNDTFPSFDLRAE-DNVMTSMYNMFDCIP 1042
            +I+   SQY ++NGRSACTCI L  A   L                    R  A GVW    + +    + G S           +VEH S  E+L  V         A  +   QG++  D        R++   R + +K V     AV ITK PETVV  L+              LL DSHPRP+L  TG+        D+L   L   FP   + ++    M  MYN FD  P
Sbjct:   89 MINCDASQYTIQNGRSACTCIALAGANAFLSEMSKPDPDPFEIITPAFLQRVLARGVWV-YHQLMQKEASTGNSEKS--------NVEHKSAEEVLLAVPDTTFGSMTAQGRTVVQGIIDDDMFHPMGFRRKLASLRDDMAKTVRSSWMAVVITKTPETVVVCLSDNDEC---------LLLDSHPRPELQATGSYAMMHADLDSLCLTLFKLFPPVHMTSDISETMAMMYNSFDLYP 308
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10796.1063.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FKS0_ECTSI7.770e-9066.52Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
K0R0Z2_THAOC4.050e-1735.11UBA domain-containing protein n=1 Tax=Thalassiosir... [more]
A0A7S2UJ74_9STRA6.540e-1130.25Hypothetical protein n=1 Tax=Attheya septentrional... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10796contigS-firma_F_contig10796:2..2404 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D7FKS0
Max annot lvl2759|Eukaryota
Evalue7.3e-76
EggNOG OGs2E3UP@1|root,2SAUQ@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-21_001890.1
Exons4
Model size1553
Cds size573
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10796.1063.1prot_S-firma_F_contig10796.1063.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10796 489..1911 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.6090133-UTR-S-firma_F_contig10796:1..4881622815621.6090133-UTR-S-firma_F_contig10796:1..488Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10796 2..488 +
1696949459.71851-UTR-S-firma_F_contig10796:1..4881696949459.71851-UTR-S-firma_F_contig10796:1..488Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10796 2..488 +
1622815621.6757443-UTR-S-firma_F_contig10796:1911..24041622815621.6757443-UTR-S-firma_F_contig10796:1911..2404Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10796 1912..2404 +
1696949459.7762232-UTR-S-firma_F_contig10796:1911..24041696949459.7762232-UTR-S-firma_F_contig10796:1911..2404Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10796 1912..2404 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815621.6252139-CDS-S-firma_F_contig10796:488..5481622815621.6252139-CDS-S-firma_F_contig10796:488..548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 489..548 +
1696949459.73308-CDS-S-firma_F_contig10796:488..5481696949459.73308-CDS-S-firma_F_contig10796:488..548Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 489..548 +
1622815621.6369605-CDS-S-firma_F_contig10796:738..8421622815621.6369605-CDS-S-firma_F_contig10796:738..842Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 739..842 +
1696949459.746081-CDS-S-firma_F_contig10796:738..8421696949459.746081-CDS-S-firma_F_contig10796:738..842Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 739..842 +
1622815621.648914-CDS-S-firma_F_contig10796:1003..11601622815621.648914-CDS-S-firma_F_contig10796:1003..1160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 1004..1160 +
1696949459.7582371-CDS-S-firma_F_contig10796:1003..11601696949459.7582371-CDS-S-firma_F_contig10796:1003..1160Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 1004..1160 +
1622815621.6615558-CDS-S-firma_F_contig10796:1659..19111622815621.6615558-CDS-S-firma_F_contig10796:1659..1911Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 1660..1911 +
1696949459.7672782-CDS-S-firma_F_contig10796:1659..19111696949459.7672782-CDS-S-firma_F_contig10796:1659..1911Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10796 1660..1911 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10796.1063.1

>prot_S-firma_F_contig10796.1063.1 ID=prot_S-firma_F_contig10796.1063.1|Name=mRNA_S-firma_F_contig10796.1063.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=191bp
MQILRGYADGVWAGTSESVTNYVTVGVSNYEAVAAAGTLSVEHTSVAEIL
ANVARYRDALQPATAQGTHQGLLGSDNSIASILREIGGARQEKSKPVAVA
ITKPPETVVCFLAPEGSSSAVGAPSSWLLFDSHPRPQLGLTGASVRSFGG
EDALFEALNDTFPSFDLRAEDNVMTSMYNMFDCIPMSLKN*
back to top

mRNA from alignment at S-firma_F_contig10796:2..2404+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10796.1063.1 ID=mRNA_S-firma_F_contig10796.1063.1|Name=mRNA_S-firma_F_contig10796.1063.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2403bp|location=Sequence derived from alignment at S-firma_F_contig10796:2..2404+ (Sphaerotrichia firma ET2_F female)
GCTGTCAGCGCTCGAGAGCTCGTTGCGTGCGATTTCTCCGCCCCTAGACC
TCGAATCGCCGCGAGGCTTGCGACTGCCGGTAGCCCTGCGTTGCGAGGGC
CTTGCCGGTGTGCGCTCGCGATCGGGGCGGGTGTGGCGTGGTTGTAGCGA
GGGCGCAAACTCGCGTCTACGACCGTTCTGTGACGTCACCCTTCGCGAGC
CTTCCGAAAATGTTGCTTCTACAAGTAGACCACTTTGACATCGCGTTCAG
CCTTCGGCGGAGCGGCGGAACGCCGCCGCGGAGCCCCTTGTAGCTACTGT
CGTTGCGACGTTCTACACTGCTGCGCTTGCGGTGCATCCCCTCGCGCACC
ACACCGGGAGCTTGTATCGATTCTCGAGACTGCACGTATGTACATTTACG
TCGATCCAGGTCATCTCTGCTCCCATCAGCCAGTATGACGTCGAGAACGG
TCGATCTGCGTGTACGTGCATTTGCTTGGAAGCTGCAATGCAAATCCTGA
GGGGATATGCCGATGGCGTTTGGGCTGGGACATCGGAAAGTGTGACGGTG
AGTCCTAAGCAAAAAGCGCACCTTCGCATAGCACAGAGAATCAACAGACA
CTTGGGTTGCGTCATAGCCGTTCTGTTCCCTCTTTTTTTTATTTTGCCCG
TGTGCTGCGGCTGTACAACAGCATCAGCATCGACGAGTACATGCCCGAAC
TACCCCTGCATTGTATCTTCGTTGTTGCTTCATTCAGAACTACGTCACCG
TTGGGGTGAGCAATTACGAAGCAGTGGCAGCGGCTGGGACGCTCTCGGTG
GAACACACTTCTGTCGCTGAAATACTCGCCAATGTTGCAAGGTAACGGCG
GCGTGAGAGGCATGCCGACAGCGGTTCCTCGCTCGTTTCGTGTGTGCTGC
TCGAGGTGATCGTTGCCGCAACGGCTTCCCTGTAGACATGCTGCAATACC
GGGGCATTGTTCTCTTGGCGTGCTCGCGTCCCGTCCTTGTTGCTTCCGTC
AGGTATCGTGATGCCTTACAGCCGGCAACTGCCCAGGGGACACATCAGGG
GTTGCTTGGCTCCGATAATTCCATCGCTAGCATTTTGCGAGAAATCGGTG
GCGCACGGCAAGAAAAAAGCAAGCCCGTGGCAGTGGCGATCACGAAGCCT
CCCGAAACAGTGAGTGCTGTGTGGAGTGAGATGCTAGCCCATGCGCGTTT
GGTTCTGCAAAAACCGTACAACTACCGCTCAAGCGGAATCGGCGGAAAGC
TAACGTACTTTGGGTTGCCTGCTGGCAGAAGCAAGACTGGCTGGTCGGCT
ACTTTAACCCCTCCCAGCGGTACGGCTACTTGTGCATGGTACAGTATTTA
CAGGAATCGCCAATCGCCCCTTGACAACCCATACCTCTGCTGCCTACCAG
GGTGGTGGATGAGCGAACCATGTACATGCTTCGAATAAAAGTATTACGTA
CTCCGGCGTTGTTTTCCGTATTGGCCGAAGCGTGCCCGACGTACATGTAC
AGTACCGCGTTTGCTGGTGCAATAGGTTGTGGGTGCCATGACAGATAGAG
TGCCGCGGATGGCGGTAGACTACAGCAGTAGACCGTGCACGATGAGATCA
ACTTTCACATTGCACTTCCGGTTGGCTGTTGGGTTGGCTGTTGGATTGAA
ACGATCAGGTGGTTTGCTTCCTGGCCCCAGAAGGCAGCTCTTCGGCCGTG
GGCGCACCATCATCCTGGCTCCTCTTTGATTCGCACCCCCGTCCTCAGCT
GGGTTTGACGGGAGCCAGCGTTCGATCATTTGGTGGAGAGGATGCGCTTT
TCGAAGCGTTGAACGACACTTTCCCTTCGTTTGATCTACGGGCAGAGGAC
AATGTCATGACAAGCATGTACAACATGTTCGATTGTATCCCTATGTCATT
GAAGAACTAGAAGAAAGTTGGGCAAGTATGCATGCCCCCAGTATTCGATC
TGGATCTCTGCTGCTTTTGTGTATTTTTGTGTCCCATTCAGCCGAGGGCC
GGGAGGGGGGGATTACTGCTGTAGGGCGTGTGACGACTGGCAGTCATCAC
ACACGCTGGTCCGTTGTAAATACGTATTGCAGAGTAGGTGGAAACAGCTG
GCGGTCTGTGGGAATAGAATATAAAATTACTCTTGTACTGAAGGCGGGAG
TGTTTGTGTTCTTAAAGACAAACAGACATCATGGGTTACGACGTGTGCAC
ACCTTTTGTCTGATTCGTGGATGTTGTGAGGCTCCTCAATATTTGCGTCT
GGTTTGCAGAGCTCATCATACACTGCGGCACACGTATTCGACGACGCGTT
TGGCTGCGCTTTCTGCATGGAGCAATAAAGGCAACCTACACAACAACTCG
TGTTCAAAGCCAACGGGGTATTTCGTACTAATGTACGAGCACTTTTGCAT
AAC
back to top

Coding sequence (CDS) from alignment at S-firma_F_contig10796:2..2404+

>mRNA_S-firma_F_contig10796.1063.1 ID=mRNA_S-firma_F_contig10796.1063.1|Name=mRNA_S-firma_F_contig10796.1063.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1146bp|location=Sequence derived from alignment at S-firma_F_contig10796:2..2404+ (Sphaerotrichia firma ET2_F female)
ATGCAAATCCTGAGGGGATATGCCGATGGCGTTTGGGCTGGGACATCGGA
AAGTGTGACGATGCAAATCCTGAGGGGATATGCCGATGGCGTTTGGGCTG
GGACATCGGAAAGTGTGACGAACTACGTCACCGTTGGGGTGAGCAATTAC
GAAGCAGTGGCAGCGGCTGGGACGCTCTCGGTGGAACACACTTCTGTCGC
TGAAATACTCGCCAATGTTGCAAGAACTACGTCACCGTTGGGGTGAGCAA
TTACGAAGCAGTGGCAGCGGCTGGGACGCTCTCGGTGGAACACACTTCTG
TCGCTGAAATACTCGCCAATGTTGCAAGGTATCGTGATGCCTTACAGCCG
GCAACTGCCCAGGGGACACATCAGGGGTTGCTTGGCTCCGATAATTCCAT
CGCTAGCATTTTGCGAGAAATCGGTGGCGCACGGCAAGAAAAAAGCAAGC
CCGTGGCAGTGGCGATCACGAAGCCTCCCGAAACAGTATCGTGATGCCTT
ACAGCCGGCAACTGCCCAGGGGACACATCAGGGGTTGCTTGGCTCCGATA
ATTCCATCGCTAGCATTTTGCGAGAAATCGGTGGCGCACGGCAAGAAAAA
AGCAAGCCCGTGGCAGTGGCGATCACGAAGCCTCCCGAAACAGTGGTTTG
CTTCCTGGCCCCAGAAGGCAGCTCTTCGGCCGTGGGCGCACCATCATCCT
GGCTCCTCTTTGATTCGCACCCCCGTCCTCAGCTGGGTTTGACGGGAGCC
AGCGTTCGATCATTTGGTGGAGAGGATGCGCTTTTCGAAGCGTTGAACGA
CACTTTCCCTTCGTTTGATCTACGGGCAGAGGACAATGTCATGACAAGCA
TGTACAACATGTTCGATTGTATCCCTATGTCATTGAAGAACTAGGTGGTT
TGCTTCCTGGCCCCAGAAGGCAGCTCTTCGGCCGTGGGCGCACCATCATC
CTGGCTCCTCTTTGATTCGCACCCCCGTCCTCAGCTGGGTTTGACGGGAG
CCAGCGTTCGATCATTTGGTGGAGAGGATGCGCTTTTCGAAGCGTTGAAC
GACACTTTCCCTTCGTTTGATCTACGGGCAGAGGACAATGTCATGACAAG
CATGTACAACATGTTCGATTGTATCCCTATGTCATTGAAGAACTAG
back to top