mRNA_S-firma_F_contig10783.1045.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: D7G5N8_ECTSI (Ferredoxin n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G5N8_ECTSI) HSP 1 Score: 201 bits (510), Expect = 1.750e-61 Identity = 130/163 (79.75%), Postives = 136/163 (83.44%), Query Frame = 1
Query: 10 STSAAQQRIDQWLQESGAGVAAAXXXXXXXXXXXXXXXXXXXXXXXXXVVAAAPEVVAPPAEAAPAGGSGYKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDLP 498
STSAAQQRIDQWL+ESG A+A XXXXXXXXXXXXXXXXXXXXXX GSGYKVKIEWEGAIHE+ CDAETTLLEAAMDAGLELPSSCMSGSCLTCPGK+VSGSVDQSEGVLEDEQ +AGFLLTC+SYPESDVHFAVVDEEDLP
Sbjct: 137 STSAAQQRIDQWLRESGGEAASAPVAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---XGSGYKVKIEWEGAIHEVNCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKIVSGSVDQSEGVLEDEQKDAGFLLTCISYPESDVHFAVVDEEDLP 296
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A835YL41_9STRA (Ferredoxin n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YL41_9STRA) HSP 1 Score: 139 bits (350), Expect = 3.520e-38 Identity = 62/95 (65.26%), Postives = 77/95 (81.05%), Query Frame = 1
Query: 211 GSGYKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
G GY V I+W+GA H + CD ETT+LEAAMDAGL+LP SCMSGSCLTCPG+L +G V+Q +GVLED+Q AG +LTCVSYP SD+ F V+ E++L
Sbjct: 137 GDGYVVTIDWDGATHVVRCDGETTVLEAAMDAGLDLPHSCMSGSCLTCPGRLSAGRVEQGDGVLEDDQIAAGLMLTCVSYPLSDLRFEVIGEDEL 231
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A2J6KNW1_LACSA (Ferredoxin n=3 Tax=Lactuca TaxID=4235 RepID=A0A2J6KNW1_LACSA) HSP 1 Score: 109 bits (272), Expect = 2.090e-27 Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE EG E+ D + T+LE A+D+G+ +P C G C+TCP KL+SGSVDQSEG+L D+ E G+ L CVSYP+SD H ++ EE+L
Sbjct: 49 YKVAIEHEGETTELEVDPDETILEKALDSGMSVPHDCKLGVCMTCPAKLLSGSVDQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 140
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A103Y2Z7_CYNCS (Ferredoxin n=1 Tax=Cynara cardunculus var. scolymus TaxID=59895 RepID=A0A103Y2Z7_CYNCS) HSP 1 Score: 108 bits (271), Expect = 2.790e-27 Identity = 49/92 (53.26%), Postives = 65/92 (70.65%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE EG E+ D + T+LE A+D GL++P C G C+TCP KL+SGSV+QSEG+L D+ E G+ L CVSYP+SD H ++ EE+L
Sbjct: 47 YKVSIEHEGQTTELEVDPDETILEKALDTGLDVPHDCKLGVCMTCPAKLLSGSVNQSEGMLSDDVIERGYSLLCVSYPKSDCHIKIIPEEEL 138
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: UPI0010A2FF49 (ferredoxin C 1, chloroplastic n=1 Tax=Prosopis alba TaxID=207710 RepID=UPI0010A2FF49) HSP 1 Score: 107 bits (266), Expect = 1.540e-26 Identity = 47/92 (51.09%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE +G + E+ D E T+L A+D+GLE+P C G C+TCP +L+SGSVDQSEG+L D+ E G+ L C SYP SD H + E++L
Sbjct: 46 YKVVIEHQGELRELEIDPEETILSKALDSGLEVPHDCKLGVCMTCPARLLSGSVDQSEGMLSDDVVERGYALLCASYPRSDCHIRTIPEDEL 137
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A7J7LHT5_9MAGN (Ferredoxin n=1 Tax=Kingdonia uniflora TaxID=39325 RepID=A0A7J7LHT5_9MAGN) HSP 1 Score: 106 bits (265), Expect = 1.790e-26 Identity = 48/92 (52.17%), Postives = 63/92 (68.48%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE EG+I E+ D + T+L A+D GL +P C G C+TCP KL+SGSVDQSEG+L D+ + G+ L CV+YP SD H + EE+L
Sbjct: 39 YKVVIEHEGSIKELEVDEDETILNKALDIGLSVPHDCKLGVCMTCPAKLMSGSVDQSEGMLSDDVVDNGYALLCVAYPRSDCHIRTIPEEEL 130
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A1Q3CXQ9_CEPFO (Fer2 domain-containing protein n=1 Tax=Cephalotus follicularis TaxID=3775 RepID=A0A1Q3CXQ9_CEPFO) HSP 1 Score: 106 bits (264), Expect = 4.510e-26 Identity = 49/92 (53.26%), Postives = 61/92 (66.30%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE EG E+ + T+L A+D+GL +P C G C+TCP KLVSG+VDQSEG+L D+ E G+ L C SYP SD HF + EEDL
Sbjct: 60 YKVVIEHEGQATELDVGPDETILAKALDSGLSVPHDCKLGVCMTCPAKLVSGTVDQSEGMLSDDVVERGYALLCASYPRSDCHFRTIPEEDL 151
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A6J1IWL8_CUCMA (Ferredoxin n=4 Tax=Cucurbitaceae TaxID=3650 RepID=A0A6J1IWL8_CUCMA) HSP 1 Score: 105 bits (263), Expect = 5.720e-26 Identity = 47/92 (51.09%), Postives = 64/92 (69.57%), Query Frame = 1
Query: 220 YKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
YKV IE EG E+ DA+ ++L +A+D GL++P C G C+TCP +LVSG+VDQSEG+L D+ E G+ L CV+YP SD H + EE+L
Sbjct: 56 YKVVIEHEGQTTELEVDADESILNSALDKGLDIPHDCKLGVCMTCPARLVSGAVDQSEGMLSDDVVEKGYSLLCVAYPRSDCHIQTIPEEEL 147
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A1S2YX51_CICAR (ferredoxin C 1, chloroplastic n=1 Tax=Cicer arietinum TaxID=3827 RepID=A0A1S2YX51_CICAR) HSP 1 Score: 105 bits (261), Expect = 9.190e-26 Identity = 46/94 (48.94%), Postives = 63/94 (67.02%), Query Frame = 1
Query: 214 SGYKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
S YKV IE EG ++ + + T+L A+D+GL +P C G C+TCP KL+SGSVDQS+G+L D+ E G+ L C SYP SD HF + E++L
Sbjct: 46 SSYKVVIEHEGQTTQLEVEPDETILSKALDSGLSVPHDCKLGVCMTCPAKLISGSVDQSDGMLSDDVVERGYALLCASYPRSDCHFRTIPEDEL 139
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Match: A0A6A4QV48_LUPAL (Ferredoxin n=1 Tax=Lupinus albus TaxID=3870 RepID=A0A6A4QV48_LUPAL) HSP 1 Score: 104 bits (260), Expect = 1.070e-25 Identity = 45/94 (47.87%), Postives = 65/94 (69.15%), Query Frame = 1
Query: 214 SGYKVKIEWEGAIHEITCDAETTLLEAAMDAGLELPSSCMSGSCLTCPGKLVSGSVDQSEGVLEDEQTEAGFLLTCVSYPESDVHFAVVDEEDL 495
S YKV +E EG E+ + + ++L A+D+GL +P C G C+TCP +L+SGSVDQS+G+L D+ E+G+ L CVSYP SD H ++ EE+L
Sbjct: 39 SSYKVVVEHEGKSTELEVEGDESILSKALDSGLNVPHDCKLGVCMTCPARLLSGSVDQSDGMLSDDVVESGYTLLCVSYPRSDCHIRIIPEEEL 132 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10783.1045.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10783.1045.1 >prot_S-firma_F_contig10783.1045.1 ID=prot_S-firma_F_contig10783.1045.1|Name=mRNA_S-firma_F_contig10783.1045.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=167bp PPHSTSAAQQRIDQWLQESGAGVAAAAPAAPAAPAAAAAAPPVAPVAPVAback to top mRNA from alignment at S-firma_F_contig10783:2419..4836- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10783.1045.1 ID=mRNA_S-firma_F_contig10783.1045.1|Name=mRNA_S-firma_F_contig10783.1045.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=2418bp|location=Sequence derived from alignment at S-firma_F_contig10783:2419..4836- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10783:2419..4836- >mRNA_S-firma_F_contig10783.1045.1 ID=mRNA_S-firma_F_contig10783.1045.1|Name=mRNA_S-firma_F_contig10783.1045.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1002bp|location=Sequence derived from alignment at S-firma_F_contig10783:2419..4836- (Sphaerotrichia firma ET2_F female)back to top |