mRNA_S-firma_F_contig10762.1025.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10762.1025.1
Unique NamemRNA_S-firma_F_contig10762.1025.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10762.1025.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10762contigS-firma_F_contig10762:1359..2959 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Ec32 ortholog descriptionplectin isoform 1
Ec32 orthologEc-02_003950.2
Exons1
Model size1603
Cds size915
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.8709779-UTR-S-firma_F_contig10762:1358..20441622815617.8709779-UTR-S-firma_F_contig10762:1358..2044Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10762 1359..2044 +
1696949457.155933-UTR-S-firma_F_contig10762:1358..20441696949457.155933-UTR-S-firma_F_contig10762:1358..2044Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10762 1359..2044 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.8859332-CDS-S-firma_F_contig10762:2044..29591622815617.8859332-CDS-S-firma_F_contig10762:2044..2959Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 2045..2959 +
1696949457.1665506-CDS-S-firma_F_contig10762:2044..29591696949457.1665506-CDS-S-firma_F_contig10762:2044..2959Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10762 2045..2959 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10762.1025.1prot_S-firma_F_contig10762.1025.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10762 2045..2959 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10762.1025.1

>prot_S-firma_F_contig10762.1025.1 ID=prot_S-firma_F_contig10762.1025.1|Name=mRNA_S-firma_F_contig10762.1025.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=305bp
MKPSNFICPRPLISAWTRKADMKLSRSKHRRNIEGDTLSTSVVVVGRDTA
EKKIRTARAEQVLPRDTRYSMSKPNTHPGMRGKDGTQAHQDHQTTRRPIH
SFGAEVRAPEVLVDFMKEGAPAEDFAGLASDGAFAFPAVPVFETPLALSI
FTRFRWSGSVAAAAAGLLGPPEPVLASLLWPGSPAPEEGLTRPTLPGLLL
PLGPVVPLCAVSAGLELPPPAGVRTGTVAEERDMPVWPGFRCAVALPPAV
PLMGCFAKPTWICPADGLGFAAGFVAPALSLPLPPLALLLRLLPVPSVPR
GFRAT
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mRNA from alignment at S-firma_F_contig10762:1359..2959+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10762.1025.1 ID=mRNA_S-firma_F_contig10762.1025.1|Name=mRNA_S-firma_F_contig10762.1025.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1601bp|location=Sequence derived from alignment at S-firma_F_contig10762:1359..2959+ (Sphaerotrichia firma ET2_F female)
GGACTACCCTTGTCTAGATTCGACTCTGTTGGCATGCATGTTCCCACCAA
AGAAACCACGTTGTTTCCGCAAAGAATTACGTACCAGGTCGAACAGAACA
GCAGTTAATTAAGGCAACGCATGATAATTACGGCGATCTTCTGCAGCTCC
GAACACCAGATCATAAACCTAACCACATTAAACGGCACTGCGAGAAGAGT
GGCAACCCGCATGCCAAACAAACGCCTTCTAAAACCGTCAAAACAAAGCG
CAAAACAAACCAAAATTACGAAAATATGGAGCTCTGATGTAAATCGCGCG
CACATGTATTGGCCCACGAAAAAGCCGGCGCACCTATGTACGACAGTAGC
AAAACAACTCGGGCCGGTTCGATCCGTTCCACGGTTGCCGCTAGCAGCAG
CGAGCCAACAACTTCGCACCAATAAGGTCTCTCACACAACATTCACCACA
ACGTGGTTCGCTTGGAAACAATATCACTCATCCAACTCCAAGCAGGCAGC
ACACAGAGTGTAGCTCCAACTGAAAAATTAATAAAGCAGTCAAATGAGGT
GCCCCGCCGTCTTCCACAGACGTCGGAATAACACAATTGACAAGGGTGCC
AAAGTACGTGGTAGGGAGGAACACCAAGACGGAATAACAGCAACAATGCA
GGCCCGCAACAAACCAAACAAACCTGGTACAATAACATGAAACCTTCCAA
CTTTATCTGTCCCCGTCCGTTAATTTCGGCGTGGACACGTAAGGCCGACA
TGAAATTATCAAGGTCAAAACACCGTCGGAATATCGAGGGGGATACTCTC
AGCACCAGCGTTGTAGTCGTGGGTCGTGACACTGCCGAAAAAAAAATCAG
GACGGCTCGCGCCGAGCAGGTCTTGCCGCGCGATACGCGGTACAGTATGT
CGAAACCAAACACACATCCTGGGATGCGTGGGAAGGACGGCACACAAGCG
CATCAGGACCACCAGACGACACGACGGCCGATTCACTCCTTTGGGGCGGA
GGTGCGAGCTCCGGAAGTTTTGGTGGACTTCATGAAAGAAGGCGCCCCGG
CCGAAGACTTTGCGGGCCTCGCAAGCGACGGCGCTTTCGCCTTCCCAGCC
GTTCCCGTCTTCGAGACGCCGTTGGCGCTGTCCATTTTCACTCGCTTCCG
TTGGTCGGGATCTGTCGCTGCTGCGGCCGCCGGTCTTTTGGGACCACCAG
AACCAGTCCTTGCGTCCTTGCTTTGGCCAGGGTCGCCAGCGCCGGAAGAA
GGGCTGACGCGCCCGACTTTGCCAGGCCTGCTGCTGCCACTGGGGCCGGT
GGTTCCTTTGTGTGCAGTCAGCGCTGGCCTAGAGCTACCGCCCCCCGCCG
GCGTACGAACAGGTACCGTGGCCGAAGAGCGGGATATGCCGGTTTGGCCT
GGGTTCCGCTGCGCTGTGGCACTACCGCCGGCAGTACCGCTGATGGGCTG
TTTCGCCAAGCCCACGTGGATCTGCCCTGCAGACGGTCTGGGCTTCGCGG
CCGGCTTCGTAGCCCCCGCTCTATCGTTGCCGCTGCCGCCGTTGGCGCTG
CTGCTGCGGCTGTTGCCCGTACCCAGCGTGCCGAGAGGCTTCCGCGCCAC
C
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Coding sequence (CDS) from alignment at S-firma_F_contig10762:1359..2959+

>mRNA_S-firma_F_contig10762.1025.1 ID=mRNA_S-firma_F_contig10762.1025.1|Name=mRNA_S-firma_F_contig10762.1025.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1830bp|location=Sequence derived from alignment at S-firma_F_contig10762:1359..2959+ (Sphaerotrichia firma ET2_F female)
ATGAAACCTTCCAACTTTATCTGTCCCCGTCCGTTAATTTCGGCGTGGAC
ACGTAAGGCCGACATGAAATTATCAAGGTCAAAACACCGTCGGAATATCG
AGGGGGATACTCTCAGCACCAGCGTTGTAGTCGTGGGTCGTGACACTGCC
GAAAAAAAAATCAGGACGGCTCGCGCCGAGCAGGTCTTGCCGCGCGATAC
GCGGTACAGTATGTCGAAACCAAACACACATCCTGGGATGCGTGGGAAGG
ACGGCACACAAGCGCATCAGGACCACCAGACGACACGACGGCCGATTCAC
TCCTTTGGGGCGGAGGTGCGAGCTCCGGAAGTTTTGGTGGACTTCATGAA
AGAAGGCGCCCCGGCCGAAGACTTTGCGGGCCTCGCAAGCGACGGCGCTT
TCGCCTTCCCAGCCGTTCCCGTCTTCGAGACGCCGTTGGCGCTGTCCATT
TTCACTCGCTTCCGTTGGTCGGGATCTGTCGCTGCTGCGGCCGCCGGTCT
TTTGGGACCACCAGAACCAGTCCTTGCGTCCTTGCTTTGGCCAGGGTCGC
CAGCGCCGGAAGAAGGGCTGACGCGCCCGACTTTGCCAGGCCTGCTGCTG
CCACTGGGGCCGGTGGTTCCTTTGTGTGCAGTCAGCGCTGGCCTAGAGCT
ACCGCCCCCCGCCGGCGTACGAACAGGTACCGTGGCCGAAGAGCGGGATA
TGCCGGTTTGGCCTGGGTTCCGCTGCGCTGTGGCACTACCGCCGGCAGTA
CCGCTGATGGGCTGTTTCGCCAAGCCCACGTGGATCTGCCCTGCAGACGG
TCTGGGCTTCGCGGCCGGCTTCGTAGCCCCCGCTCTATCGTTGCCGCTGC
CGCCGTTGGCGCTGCTGCTGCGGCTGTTGCCCGTACCCAGCGTGCCGAGA
GGCTTCCGCGCCACCATGAAACCTTCCAACTTTATCTGTCCCCGTCCGTT
AATTTCGGCGTGGACACGTAAGGCCGACATGAAATTATCAAGGTCAAAAC
ACCGTCGGAATATCGAGGGGGATACTCTCAGCACCAGCGTTGTAGTCGTG
GGTCGTGACACTGCCGAAAAAAAAATCAGGACGGCTCGCGCCGAGCAGGT
CTTGCCGCGCGATACGCGGTACAGTATGTCGAAACCAAACACACATCCTG
GGATGCGTGGGAAGGACGGCACACAAGCGCATCAGGACCACCAGACGACA
CGACGGCCGATTCACTCCTTTGGGGCGGAGGTGCGAGCTCCGGAAGTTTT
GGTGGACTTCATGAAAGAAGGCGCCCCGGCCGAAGACTTTGCGGGCCTCG
CAAGCGACGGCGCTTTCGCCTTCCCAGCCGTTCCCGTCTTCGAGACGCCG
TTGGCGCTGTCCATTTTCACTCGCTTCCGTTGGTCGGGATCTGTCGCTGC
TGCGGCCGCCGGTCTTTTGGGACCACCAGAACCAGTCCTTGCGTCCTTGC
TTTGGCCAGGGTCGCCAGCGCCGGAAGAAGGGCTGACGCGCCCGACTTTG
CCAGGCCTGCTGCTGCCACTGGGGCCGGTGGTTCCTTTGTGTGCAGTCAG
CGCTGGCCTAGAGCTACCGCCCCCCGCCGGCGTACGAACAGGTACCGTGG
CCGAAGAGCGGGATATGCCGGTTTGGCCTGGGTTCCGCTGCGCTGTGGCA
CTACCGCCGGCAGTACCGCTGATGGGCTGTTTCGCCAAGCCCACGTGGAT
CTGCCCTGCAGACGGTCTGGGCTTCGCGGCCGGCTTCGTAGCCCCCGCTC
TATCGTTGCCGCTGCCGCCGTTGGCGCTGCTGCTGCGGCTGTTGCCCGTA
CCCAGCGTGCCGAGAGGCTTCCGCGCCACC
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