mRNA_S-firma_F_contig10757.1020.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10757.1020.1
Unique NamemRNA_S-firma_F_contig10757.1020.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10757.1020.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10757contigS-firma_F_contig10757:3620..4250 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size633
Cds size399
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5273585-CDS-S-firma_F_contig10757:3619..40181622815617.5273585-CDS-S-firma_F_contig10757:3619..4018Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 3620..4018 +
1696949456.977312-CDS-S-firma_F_contig10757:3619..40181696949456.977312-CDS-S-firma_F_contig10757:3619..4018Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10757 3620..4018 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.541666-UTR-S-firma_F_contig10757:4018..42501622815617.541666-UTR-S-firma_F_contig10757:4018..4250Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10757 4019..4250 +
1696949456.9919722-UTR-S-firma_F_contig10757:4018..42501696949456.9919722-UTR-S-firma_F_contig10757:4018..4250Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10757 4019..4250 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10757.1020.1prot_S-firma_F_contig10757.1020.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10757 3620..4018 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10757.1020.1

>prot_S-firma_F_contig10757.1020.1 ID=prot_S-firma_F_contig10757.1020.1|Name=mRNA_S-firma_F_contig10757.1020.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=133bp
SGAGEERPSKRRKDGEFFFRVACVEAGGGGAERAPKYVVGPCSDNGRVRV
GVLQEKPDDDGRWVVSLAVLRPRQVRVVLRHFRNGGREVGPAFCFWLIFG
QASPVRQPCQVLFQFCQVVGFQGRLVSTDCCS*
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mRNA from alignment at S-firma_F_contig10757:3620..4250+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10757.1020.1 ID=mRNA_S-firma_F_contig10757.1020.1|Name=mRNA_S-firma_F_contig10757.1020.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=631bp|location=Sequence derived from alignment at S-firma_F_contig10757:3620..4250+ (Sphaerotrichia firma ET2_F female)
AGCGGCGCAGGGGAGGAGCGACCGTCCAAGCGGCGGAAAGATGGTGAGTT
TTTTTTTCGTGTGGCGTGTGTTGAAGCGGGCGGGGGCGGGGCGGAACGAG
CTCCAAAATATGTTGTAGGTCCTTGTTCTGACAATGGAAGGGTAAGGGTG
GGCGTGTTGCAAGAAAAGCCTGACGATGATGGTCGGTGGGTAGTCAGTCT
CGCGGTTTTGCGACCCCGCCAAGTGCGTGTCGTTTTGCGCCATTTCAGAA
ACGGCGGGCGCGAGGTTGGACCTGCATTTTGTTTCTGGTTGATTTTTGGC
CAAGCAAGCCCTGTCCGCCAACCGTGTCAGGTGCTTTTTCAATTTTGTCA
AGTAGTGGGTTTTCAGGGCCGACTTGTCAGCACTGACTGCTGTTCTTGAA
ATGTGCAGACACGGCAAAGCGGCGGGTATCGTGAATCGTAATTCAAATAC
CATCTCGGGCCACGAAAGCACCTTCATGTTGAGTCACACACACACACACA
CACACAACCCGCGTATGATGCCGCCCTCTTCATCCCCGCCAAACTAACTA
AGCGCAACCGCCGCGGCAACAAGGAGGAGGTGCACAGGAAAACGGAGGAC
CGGCAGGGCGAAGAGAAGGACACCAAGAAGA
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Coding sequence (CDS) from alignment at S-firma_F_contig10757:3620..4250+

>mRNA_S-firma_F_contig10757.1020.1 ID=mRNA_S-firma_F_contig10757.1020.1|Name=mRNA_S-firma_F_contig10757.1020.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=798bp|location=Sequence derived from alignment at S-firma_F_contig10757:3620..4250+ (Sphaerotrichia firma ET2_F female)
AGCGGCGCAGGGGAGGAGCGACCGTCCAAGCGGCGGAAAGATGGTGAGTT
TTTTTTTCGTGTGGCGTGTGTTGAAGCGGGCGGGGGCGGGGCGGAACGAG
CTCCAAAATATGTTGTAGGTCCTTGTTCTGACAATGGAAGGGTAAGGGTG
GGCGTGTTGCAAGAAAAGCCTGACGATGATGGTCGGTGGGTAGTCAGTCT
CGCGGTTTTGCGACCCCGCCAAGTGCGTGTCGTTTTGCGCCATTTCAGAA
ACGGCGGGCGCGAGGTTGGACCTGCATTTTGTTTCTGGTTGATTTTTGGC
CAAGCAAGCCCTGTCCGCCAACCGTGTCAGGTGCTTTTTCAATTTTGTCA
AGTAGTGGGTTTTCAGGGCCGACTTGTCAGCACTGACTGCTGTTCTTGAA
GCGGCGCAGGGGAGGAGCGACCGTCCAAGCGGCGGAAAGATGGTGAGTTT
TTTTTTCGTGTGGCGTGTGTTGAAGCGGGCGGGGGCGGGGCGGAACGAGC
TCCAAAATATGTTGTAGGTCCTTGTTCTGACAATGGAAGGGTAAGGGTGG
GCGTGTTGCAAGAAAAGCCTGACGATGATGGTCGGTGGGTAGTCAGTCTC
GCGGTTTTGCGACCCCGCCAAGTGCGTGTCGTTTTGCGCCATTTCAGAAA
CGGCGGGCGCGAGGTTGGACCTGCATTTTGTTTCTGGTTGATTTTTGGCC
AAGCAAGCCCTGTCCGCCAACCGTGTCAGGTGCTTTTTCAATTTTGTCAA
GTAGTGGGTTTTCAGGGCCGACTTGTCAGCACTGACTGCTGTTCTTGA
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