mRNA_S-firma_F_contig1075.1012.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig1075.1012.1 vs. uniprot
Match: A0A6H5L4T0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L4T0_9PHAE) HSP 1 Score: 585 bits (1508), Expect = 1.640e-170 Identity = 708/1573 (45.01%), Postives = 797/1573 (50.67%), Query Frame = 1
Query: 1 MDGPWARVGYGGKEDGWVLTANKRGAMLTAADDQAAAGELWSDQERNASTAAGHDGPAADDGQPHPGDDRPIGGRRPTHHPXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDSDGXXXXXXXXXXXALPAGGLKPWQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPKAAPEGP-DAEAAVAAGGEGFDEVEGGATSGVPAAAPAKPWLKKRRPVGA---GAASASSVFGDGADVVVAAKPWQAAAAVKGAAGAAAVADASPGGEAAAPGERERDDVAGGDGGVAGLEACLGDRDWKKRVAAFEAATRACREGGKGAAGTVGPLLPRMLLDKNVQAVDAAVDTLTAYLSLRWSTMGAEEGAALASALAERALCCGRGPVEAKADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRAVSGCVRAMSAGMKERAGFAGAGGDSRKEVYAAAKSMLGSSKLPVRMAGVSLSAALYAAEGTVVKNDLGLEDLESRIKAQVERAFADADADAAGAPAADGPPVAASEEPLPAPPSPPIRPRAAPXXXXXXXXXXXXXTIDD--LLADND-TLDLLTPXXXXXPHPSAGRTLGAALAEPTASXXXXXXXXXXXXXXXXXXXXXVTEEDVADARAAPAADDLLSEDALESDGDYEDAAESAGIATAAXXXXXXXXXXXXXXAV------------------AAMPDLRVTTSPPFDDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTRRTLGERLAAARDRAGSGAAAAGGAPETPQSFARRRSDASAARPSTPGYHRASAKKTGVRSAVDRETQFLGTQMLVLPEGERSAWDDILADVLLKAPPANPTRWRRHRLSADGAATHAALRAGGAGGSLASPRRLLDGGGHRDREHG----RHDAMPXXXXXXXXXXXXXXXXXXXXXXXXXLLAPGTFGTAED----GGRSGRASSGFGVDSGSDERSVGWRRERAASDGSDNHGDRRRRRPSTEESAPL--PEASLASPLREGEQERGAAELGPESAPSWTQSQQA----LAMRSSADESVRERMAKFGARRQARQAQEQLAXXXXXXXXXXXXXXXXXNTDDEMAAAVGTANIVATSGRRHLLRGPGSWTSGXXXXXXXXXXXXXXXXXXXXXXXXXXXXX-----------SNLVVTQAALGNLTNNLAS-MKITSSQPTSGNRESRRQSISRRLSRGASMGAGRV--VVRDAPDLGAVEEAEAVALGASPAXXXXXXXXXXXXXXXXXRRRVAEQRLANRRSLNYQVAVEAQEEPVDLGTVLDDGVVDRRRGDDERGYSGRREPRRSSPRPGRPGRLPPADNALESEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRFFAQRGEDFHVHXXXXXRYSAAASPVSWDTDTPLDSPRSGSDSDAAYDSLRGVLSKVSLSKYFKGFRRREVRLEDLRHLTEADLTEMGMPVGARKRLLVEVHGVATPTSTAALPTP 4560
M G WARV Y G DGWVLT NKRG MLTAA+DQ A W++QE+NA G+D P DDRPIGG+R T H G +D+ A P+GGLKPWQR XXXXX XXXXXXXXX A P D+ A V GGE D A + +RP G GA SS G D V AKPW+AAA A + V +A+ G E AG + G+AGLEAC +RDWKKRVA FEAA+RAC +GA TVGPLLPRML DKNVQAVDAAV+TLTAYLSLR S MGAEEG++LASALAERALCCGR PVEAKADAA AP+AVSGCVRAMSAGM + GGDSR+EVY+AAK+MLGSSKLPV+MAG+SLS+ALYAAEG V ++DLG+E +E+RIK+Q+ERAFADA P SPPIRP A XXXXXXXXXXXXX LL DND L+LLTP P A R LAEP XXXXXXXXXXX E + D+L SED XXXXXXXXXXXXXX A +PDLR+T SPP D R L ERL++ R G AAAG A ETP+ F STPGY R SAKK GVR++V+RETQFLGTQMLVLPEGERSAWDDIL D+LLKAPPA+P RW +HRLSADG +P + GGG HG DA+ XXXXXXXXXXXXXXXXXXXXX LL P + + D G SGR S GF V S SD+R E+APL PE+ AS GE++ G ES PSW + QQ LA+RSSADESVRERMA+ ARR RQ+++ A + D E AA AN+VAT+GRRHLLRGPGSWTSG XXXXXXXX SNLVVTQ ALGNL NNLAS M + TS NRESR+QSISRRLSRGAS+G R V +A +LGA EEAEAVALGASP XXXXXXXXXXX R R E R A+RRS ++ L D+ VVD RG R S + PAD LESE XXXXXXXXXXXXXXXXXXXXX FF Q+G D + RYS ++P + RSGSDSDAAYDSLRGVL KVSLSKYFK FRRREVRLEDL+HLTE DLTEMGMPVG RKRLLVEVHG+ TP T TP
Sbjct: 1690 MKGLWARVAYRGNTDGWVLTENKRGKMLTAAEDQEEAEAAWAEQEQNAWQDDGNDNVP-----PASRDDRPIGGKRSTQHDGFDPGADSGRLETTGAASSPSGNGGGGVLDTWSQAAVGTDGGPAAPPSGGLKPWQRRRKVASSRKPAEVQGGAEHAEXXXXXPPAKPWQRRGAAKSDPLADGSEGAVTXXXXXXXXXXXKAGALPKDSTAEV--GGEAGDS----AAAADXXXXXXXXXXXXKRPGGGVRVGAVDGSSSGKPGGDDAVVAKPWEAAAR----AASETVEEAAVVPVGVERGAGEGVGGAGREDGLAGLEACFEERDWKKRVAVFEAASRACHSRVEGATATVGPLLPRMLQDKNVQAVDAAVETLTAYLSLR-SNMGAEEGSSLASALAERALCCGRAPVEAKADAAAATLLAGAGGTGGLARRGAWLTLAARAGGLENEFFPPAGEEGGLGRSKVAAA--------APKAVSGCVRAMSAGMGKGRTIVAGGGDSREEVYSAAKAMLGSSKLPVKMAGISLSSALYAAEGDVARDDLGVEGMEARIKSQLERAFADAXXXXXXXX------XXXXXXXXXXPASPPIRPPATXXXXXXXXXXXXXXXXXAIYLLGDNDGNLELLTPP------PPAPRVPEQRLAEPRGXXXXXXXXXXXXEGVAPLGGSEPAEAAKSGIPEPTVDDELWSEDXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLLDGLSADLPDLRITISPPEGDGSLAAPPRGAGEVGRAK------------ARLGLAERLSSER-----GLAAAGAAAETPRGF------------STPGY-RGSAKKRGVRTSVERETQFLGTQMLVLPEGERSAWDDILDDMLLKAPPADPLRWSQHRLSADG-----------------TPGIVGPGGG--SAPHGARPDEEDALKLMXXXXXXXXXXXXXXXXXXXXXA-LLRPDSLRSVGDDDGVGSGSGRGSMGFEVGSDSDDRXXXXXXXXXXXXXXXXXX--------XXEAAPLSLPESFSAS-FGRGEED-GPVGTTAESRPSWNEQQQQRQDMLAVRSSADESVRERMARLSARR--RQSRQATAPRTGEEPLQKAPADSAMD-DGEGGAA---ANVVATAGRRHLLRGPGSWTSGIGSGSGPGGVRSPRLSRAGHGXXXXXXXXXXXXXGSPSSSSNLVVTQEALGNLNNNLASLMSVKRQASTSENRESRKQSISRRLSRGASLGTFRATAVATEAAELGAAEEAEAVALGASPXXXXXXXXXXXXETIAA-RHRALEMRRASRRSRGGDAPGGSEGA---LREFQDESVVDLSPA--ARGXXXXXXXRLGS--------ILPADTVLESEEESYATPRGGRCSSESVXXXXXXXXXXXXXXXXXXXXXGQETSRGHGGSG---------FFGQQGSDPYRRKG---RYSTISTPNATXXXXXXXXXRSGSDSDAAYDSLRGVLGKVSLSKYFKEFRRREVRLEDLQHLTEGDLTEMGMPVGPRKRLLVEVHGITTPVRTPVAATP 3134
BLAST of mRNA_S-firma_F_contig1075.1012.1 vs. uniprot
Match: D7G7L6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7L6_ECTSI) HSP 1 Score: 258 bits (659), Expect = 2.020e-65 Identity = 280/557 (50.27%), Postives = 312/557 (56.01%), Query Frame = 1
Query: 13 WARVGYGGKEDGWVLTANKRGAMLTAADDQAAAGELWSDQERNASTAAGHDGPAADDGQPHPGDDRPIGGRRPTHHPXXXXXXXXXXXXXXXXXXXXXXXXXXGGVDSDGXXXXXXXXXXXALPAGGLKPWQRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXPK----AAPEGPDAEAAVAAGGEGFDEVEGGATSGVPAAAPAKPWLKKRRPVGAGAASASSVFGDGADVVVAAKPWQAAAAVKGAAGAAAVADASPGGEAAAPGERERDDVAGGDGGVAGLEACLGDRDWKKRVAAFEAATRACREGGKGAAGTVGPLLPRMLLDKNVQAVDAAVDTLTAYLSLRWSTMGAEEGAALASALAERALCCGRGPVEAKADAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAPRAVSGCVRAMSAGMKERAGFAGAGGDSRKEVYAAAKSMLGSSKLPVRMAGVSLSAALYAAEGTVVKNDLGLEDLESRIKAQ 1671
WARVGY GK DGWVLT NKRG MLTAA+DQ A W++QE+NAS G+D P DDRPIGG+R T XXXXXXXXXX XXXXXXXXXXX LKPWQ XXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXX A P+ AE +AG V AKPW+A A A + V +A+ E G E AGG+ G+AGLEACL +RDWKKRVA FEAA+ ACR +GAAG VGPLLPRML DKNVQAVDAAVDTLTAYLSLR STMGAEEG++LASALAERALCCGR PVEAKADAA AP+AV+GCVRAMSAGM + GGDSRKEVY+AAK+MLGSSKLPV+MAG+SLS ALYAAEG V ++DLG+E +E+RIK+Q
Sbjct: 2054 WARVGYRGKTDGWVLTENKRGKMLTAAEDQEEAEAAWAEQEQNASQDDGNDNVP-----PASRDDRPIGGKRSTQLDGFDPGADSGGLETTGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLKPWQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAKPWQRRGAAKSDPLADGTXXXXXXXXXXXXXXTKKAGALPKDSTAEVGGSAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAVVAKPWEADAR----AASETVEEAAVMPEGVGRGAGEGGVSAGGEDGLAGLEACLEERDWKKRVAVFEAASLACRSRVEGAAGKVGPLLPRMLQDKNVQAVDAAVDTLTAYLSLR-STMGAEEGSSLASALAERALCCGRAPVEAKADAAAATLLAGAGGSGGLARRGAWLALAARAGGLENEFFPPGGEEGGRGRSKVAAA--------APKAVTGCVRAMSAGMGKGRTVVAGGGDSRKEVYSAAKAMLGSSKLPVKMAGISLSGALYAAEGDVARDDLGVEGMEARIKSQ 2592 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1075.1012.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig1075.1012.1 >prot_S-firma_F_contig1075.1012.1 ID=prot_S-firma_F_contig1075.1012.1|Name=mRNA_S-firma_F_contig1075.1012.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=1679bp MDGPWARVGYGGKEDGWVLTANKRGAMLTAADDQAAAGELWSDQERNASTback to top mRNA from alignment at S-firma_F_contig1075:783..10303+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig1075.1012.1 ID=mRNA_S-firma_F_contig1075.1012.1|Name=mRNA_S-firma_F_contig1075.1012.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=9521bp|location=Sequence derived from alignment at S-firma_F_contig1075:783..10303+ (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig1075:783..10303+ >mRNA_S-firma_F_contig1075.1012.1 ID=mRNA_S-firma_F_contig1075.1012.1|Name=mRNA_S-firma_F_contig1075.1012.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=10074bp|location=Sequence derived from alignment at S-firma_F_contig1075:783..10303+ (Sphaerotrichia firma ET2_F female)back to top |