prot_S-firma_F_contig10741.1005.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10741.1005.1
Unique Nameprot_S-firma_F_contig10741.1005.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length494
Homology
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BLAST of mRNA_S-firma_F_contig10741.1005.1 vs. uniprot
Match: D8LSE7_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LSE7_ECTSI)

HSP 1 Score: 157 bits (396), Expect = 7.970e-38
Identity = 97/176 (55.11%), Postives = 112/176 (63.64%), Query Frame = 0 
Query:  201 RVGTRLNRP-TGGRG-----------GGSRSSPGGRGRVKKSGQAAEAAAADWRDDELDGKSRSFLFVKEVKGIPKWNGAKVMKVLEEAHRLS-----GADDDSGGSADAXXXXXXXXXXXRNGGRGGAKKLEMTSFMYNACISHMSMCGRWQEALQVLDLMRAVEFPPDEFCVTA 359
            R+GTRLNRP +GGRG             S +  GGR   K+    +    A WRD +LDGKSRSFLFVKE+K IPKWNG +VM VL+EA RLS      A  D GG+ADA           R G       LEMTSFMYNACISHMS CGRWQ+AL++L+LMRA +FPPDEFCVTA
Sbjct:   50 RLGTRLNRPRSGGRGRHGXXXXXXXXXXSNAPNGGR---KERAVKSTPEGASWRDSDLDGKSRSFLFVKEIKAIPKWNGERVMNVLKEAQRLSEAAAAAAPGDGGGAADA-----------RRG-------LEMTSFMYNACISHMSSCGRWQQALEILELMRAADFPPDEFCVTA 204
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10741.1005.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LSE7_ECTSI7.970e-3855.11Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 311..400
e-value: 3.7E-16
score: 60.9
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 401..491
e-value: 1.7E-24
score: 88.9
IPR002885Pentatricopeptide repeatPFAMPF01535PPRcoord: 320..346
e-value: 0.0044
score: 17.2
coord: 461..489
e-value: 4.9E-5
score: 23.3
coord: 357..384
e-value: 0.44
score: 10.9
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 391..434
e-value: 2.0E-8
score: 34.3
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 321..354
e-value: 5.7E-6
score: 24.2
coord: 393..423
e-value: 1.5E-6
score: 26.0
coord: 462..489
e-value: 2.3E-5
score: 22.3
coord: 425..456
e-value: 8.2E-6
score: 23.7
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 353..387
score: 7.684
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 318..352
score: 9.865
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 388..422
score: 10.413
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 423..457
score: 10.83
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 458..492
score: 9.295
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 315..489

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10741contigS-firma_F_contig10741:2736..4921 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10741.1005.1mRNA_S-firma_F_contig10741.1005.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10741 2736..4921 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10741.1005.1 ID=prot_S-firma_F_contig10741.1005.1|Name=mRNA_S-firma_F_contig10741.1005.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=494bp
AVQDLWRRKGTVKSVNILEGTNSRQHSLTSLERRNKRRAQSSRSDGVRLR
SRADVSSSSSSSSTATTTSYFQGGLTNVSRQQHRPQRRQRRRRVLLAFAP
PLAGSRDSPAASTARRPQAHAGGVVDTDFTSRSSNSNSSSSSSSRSHPHG
GARPPYSSNGGFRRPREAAALASRLEAHRSVSSSSSSSSTEARAASSWGG
RVGTRLNRPTGGRGGGSRSSPGGRGRVKKSGQAAEAAAADWRDDELDGKS
RSFLFVKEVKGIPKWNGAKVMKVLEEAHRLSGADDDSGGSADAGTGTGGG
GGNGRNGGRGGAKKLEMTSFMYNACISHMSMCGRWQEALQVLDLMRAVEF
PPDEFCVTAAITACGRAGQWQKSLDLLHALRADGGRTTVRLMNAVVDACR
KGHQWQKALEMLEDMRSQGITPDDFTYTAAIAACRQGGQCDKALELFREM
PSAGVEHTSIHYNVAIAICGEGGQSEKAFEVFREMQEAGNGTR*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf