mRNA_S-firma_F_contig10725.982.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10725.982.1
Unique NamemRNA_S-firma_F_contig10725.982.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10725.982.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10725contigS-firma_F_contig10725:2323..3337 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size402
Cds size402
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.6077344-CDS-S-firma_F_contig10725:2322..25011622815613.6077344-CDS-S-firma_F_contig10725:2322..2501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 2323..2501 -
1696949454.3936481-CDS-S-firma_F_contig10725:2322..25011696949454.3936481-CDS-S-firma_F_contig10725:2322..2501Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 2323..2501 -
1622815613.621889-CDS-S-firma_F_contig10725:3114..33371622815613.621889-CDS-S-firma_F_contig10725:3114..3337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 3115..3337 -
1696949454.4074433-CDS-S-firma_F_contig10725:3114..33371696949454.4074433-CDS-S-firma_F_contig10725:3114..3337Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10725 3115..3337 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10725.982.1prot_S-firma_F_contig10725.982.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10725 2323..3337 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10725.982.1

>prot_S-firma_F_contig10725.982.1 ID=prot_S-firma_F_contig10725.982.1|Name=mRNA_S-firma_F_contig10725.982.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=134bp
AAAASPAAPAAAAAAPGVGISSPTPPAQNEDDYEAVEDEPKAEPGGEAET
VTAEAAEGEPEASYDEPSKAAAEQGVDIGELSARLQQLAAASSFNDDEDD
GAGDSDVPSPAAAAAAAPLAAAYDTRELEEDDEE
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mRNA from alignment at S-firma_F_contig10725:2323..3337-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10725.982.1 ID=mRNA_S-firma_F_contig10725.982.1|Name=mRNA_S-firma_F_contig10725.982.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1015bp|location=Sequence derived from alignment at S-firma_F_contig10725:2323..3337- (Sphaerotrichia firma ET2_F female)
GCCGCTGCCGCGTCTCCTGCGGCCCCTGCGGCGGCGGCAGCTGCTCCCGG
GGTGGGCATATCGTCGCCGACACCTCCGGCGCAGAACGAGGACGACTACG
AAGCGGTGGAGGACGAGCCCAAGGCAGAGCCAGGGGGCGAGGCGGAGACC
GTTACGGCGGAGGCAGCGGAAGGCGAACCGGAGGCCTCTTACGACGAGCC
GAGCAAAGCGGCGGCGGAACAAGGTTAGATGCGACACACGTTGTGGTGTC
TTTCGTGTCTGCGCAAAGCACGCGCTCGTCGCCGATTGTTTTTTCTTCTT
CTTTTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGACT
TCGTCTTCTTCTTCTTCTTCTTCGACTTCGTCTCTCTCTCCCCCCGTCTC
TGTCTCCTGCTGCCCCCCTGACCCTGTTTTCTCGCTTGTCCCCCTTTCCG
GCCGACGCCGCCCCCGCACCGCACTGCGCGCGCGCCCTCCAGTCGGTGAC
GATTTGTGAATGTTGTCCGAAACGGCATGTCATTATTAATTGTACCGCAG
TGCGGGTAGACGATTCTATGTGGCAACGCGAAACCAAGCAGCGCGGCTGC
TCTGGTGTCCTGACAAATCACGCGTCGCAGACAGCAAATCAATCCTCTAC
CTAAGTGTAAGCTAGACCAAGGCAAATACACCGATGCGAGAGCATCGAAT
CCGAGAGGTGTGCGGCGCCGTCTCCCTCACGTCGTCCACCGACCACGCAC
AACCCTGACGCGCGTTGGGAAACTCTCTCTGCTGCTCTTGCCCCGTTCTC
GCGCTCTCCTCCGTCCATTCTTCCTCCACACCCCAGGTGTCGACATCGGC
GAGCTTTCGGCCCGGCTCCAGCAGCTGGCGGCCGCCTCGTCCTTCAACGA
CGACGAGGACGACGGCGCCGGGGACAGCGACGTGCCCTCCCCCGCGGCCG
CTGCCGCTGCCGCCCCGCTCGCGGCTGCTTACGATACCCGGGAGCTCGAA
GAGGACGATGAGGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10725:2323..3337-

>mRNA_S-firma_F_contig10725.982.1 ID=mRNA_S-firma_F_contig10725.982.1|Name=mRNA_S-firma_F_contig10725.982.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=804bp|location=Sequence derived from alignment at S-firma_F_contig10725:2323..3337- (Sphaerotrichia firma ET2_F female)
GCCGCTGCCGCGTCTCCTGCGGCCCCTGCGGCGGCGGCAGCTGCTCCCGG
GGTGGGCATATCGTCGCCGACACCTCCGGCGCAGAACGAGGACGACTACG
AAGCGGTGGAGGACGAGCCCAAGGCAGAGCCAGGGGGCGAGGCGGAGACC
GTTACGGCGGAGGCAGCGGAAGGCGAACCGGAGGCCTCTTACGACGAGCC
GAGCAAAGCGGCGGCGGAACAAGGCCGCTGCCGCGTCTCCTGCGGCCCCT
GCGGCGGCGGCAGCTGCTCCCGGGGTGGGCATATCGTCGCCGACACCTCC
GGCGCAGAACGAGGACGACTACGAAGCGGTGGAGGACGAGCCCAAGGCAG
AGCCAGGGGGCGAGGCGGAGACCGTTACGGCGGAGGCAGCGGAAGGCGAA
CCGGAGGCCTCTTACGACGAGCCGAGCAAAGCGGCGGCGGAACAAGGTGT
CGACATCGGCGAGCTTTCGGCCCGGCTCCAGCAGCTGGCGGCCGCCTCGT
CCTTCAACGACGACGAGGACGACGGCGCCGGGGACAGCGACGTGCCCTCC
CCCGCGGCCGCTGCCGCTGCCGCCCCGCTCGCGGCTGCTTACGATACCCG
GGAGCTCGAAGAGGACGATGAGGAGGTGTCGACATCGGCGAGCTTTCGGC
CCGGCTCCAGCAGCTGGCGGCCGCCTCGTCCTTCAACGACGACGAGGACG
ACGGCGCCGGGGACAGCGACGTGCCCTCCCCCGCGGCCGCTGCCGCTGCC
GCCCCGCTCGCGGCTGCTTACGATACCCGGGAGCTCGAAGAGGACGATGA
GGAG
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