mRNA_S-firma_F_contig10721.979.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10721.979.1
Unique NamemRNA_S-firma_F_contig10721.979.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000C1CE173 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Olea europaea var. sylvestris TaxID=158386 RepID=UPI000C1CE173)

HSP 1 Score: 114 bits (286), Expect = 4.610e-32
Identity = 46/69 (66.67%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
            MFH PED+RWFK IE+WTK G  G IK+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW   + PL
Sbjct:    1 MFHNPEDVRWFKPIEVWTKCGRRGRIKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRTYPKWPQYWFPL 69          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A813BGX2_9DINO (Tsr1 protein (Fragment) n=1 Tax=Symbiodinium sp. KB8 TaxID=230985 RepID=A0A813BGX2_9DINO)

HSP 1 Score: 120 bits (300), Expect = 1.940e-30
Identity = 48/69 (69.57%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
            MFH PEDIR+FK +ELWTK+G  G I++PVGTHG MKC FSG++  HDTVC+SL+KRVYP+WG SYR L
Sbjct:   87 MFHNPEDIRYFKPVELWTKHGLAGRIREPVGTHGSMKCHFSGSVYSHDTVCMSLFKRVYPRWGASYRHL 155          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9K8S9_ARUDO (DUF663 domain-containing protein n=2 Tax=Arundo donax TaxID=35708 RepID=A0A0A9K8S9_ARUDO)

HSP 1 Score: 112 bits (279), Expect = 4.040e-30
Identity = 44/62 (70.97%), Postives = 53/62 (85.48%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
            MFH P+DIRWFK +ELWTK+G  G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KRVYPKW
Sbjct:   77 MFHNPDDIRWFKPVELWTKHGRHGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRVYPKW 138          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A2P2M9D1_RHIMU (DUF663 domain-containing protein n=1 Tax=Rhizophora mucronata TaxID=61149 RepID=A0A2P2M9D1_RHIMU)

HSP 1 Score: 111 bits (278), Expect = 4.700e-30
Identity = 44/67 (65.67%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
            MFH PED+RWFK +E+WTK G  G +K+PVGTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct:   67 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPVGTHGAMKCIFNGVLQQHDTVCMSLYKRSYPKW-PEHR 132          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI0011D2A811 (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Syzygium oleosum TaxID=219896 RepID=UPI0011D2A811)

HSP 1 Score: 109 bits (273), Expect = 4.470e-29
Identity = 44/67 (65.67%), Postives = 54/67 (80.60%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
            MFH PED+RWFK +E+WTK G  G IK+PVGTHG MKC  +G ++QHDTVC+SL+KR YPKW P +R
Sbjct:   85 MFHNPEDVRWFKPVEVWTKCGCRGRIKEPVGTHGAMKCVLNGVLQQHDTVCMSLYKRAYPKW-PEHR 150          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: L8H0X3_ACACA (Bms1-type G domain-containing protein n=1 Tax=Acanthamoeba castellanii str. Neff TaxID=1257118 RepID=L8H0X3_ACACA)

HSP 1 Score: 117 bits (292), Expect = 6.270e-29
Identity = 46/77 (59.74%), Postives = 58/77 (75.32%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGP---------SYRP 204
            MF+ P+D+RWF  +ELWTKYG +GHIK+P+GTHG MKC F G I+ HDTVC++L+KR+YPKWG          SYRP
Sbjct:  758 MFYHPDDVRWFSPVELWTKYGRSGHIKEPLGTHGLMKCRFDGKIQNHDTVCMNLYKRIYPKWGTTTLLSEKPSSYRP 834          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A0A9D3H5_ARUDO (DUF663 domain-containing protein n=1 Tax=Arundo donax TaxID=35708 RepID=A0A0A9D3H5_ARUDO)

HSP 1 Score: 110 bits (275), Expect = 6.310e-29
Identity = 42/62 (67.74%), Postives = 52/62 (83.87%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
            MFH P+D+RWFK +ELWTK+G  G IK+ VGTHG MKC F+ +I+QHDTVC+SL+KR YPKW
Sbjct:  127 MFHNPDDVRWFKPVELWTKHGRRGRIKETVGTHGAMKCIFNSSIQQHDTVCMSLYKRAYPKW 188          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A835LN62_9MAGN (Bms1-type G domain-containing protein n=1 Tax=Coptis chinensis TaxID=261450 RepID=A0A835LN62_9MAGN)

HSP 1 Score: 116 bits (291), Expect = 8.450e-29
Identity = 46/69 (66.67%), Postives = 56/69 (81.16%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYRPL 207
            MFHTPED+RWFK IE+WTK G  G +K+PVGTHG MKC F+G ++QHDTVC+SL+KRVYPKW     P+
Sbjct:  686 MFHTPEDVRWFKPIEVWTKCGRRGRVKEPVGTHGAMKCIFNGIVQQHDTVCMSLFKRVYPKWPEQRYPM 754          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: A0A7J8NUV3_GOSRA (DUF663 domain-containing protein (Fragment) n=3 Tax=Gossypium TaxID=3633 RepID=A0A7J8NUV3_GOSRA)

HSP 1 Score: 112 bits (281), Expect = 1.020e-28
Identity = 43/67 (64.18%), Postives = 55/67 (82.09%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKWGPSYR 201
            MFH PED+RWFK +E+WTK G  G +K+P+GTHG MKC F+G ++QHDTVC+SL+KR YPKW P +R
Sbjct:  242 MFHNPEDVRWFKPVEVWTKCGRRGRVKEPIGTHGGMKCIFNGGLQQHDTVCMSLYKRAYPKW-PEHR 307          
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Match: UPI000539EC6C (pre-rRNA-processing protein TSR1 homolog n=1 Tax=Camelina sativa TaxID=90675 RepID=UPI000539EC6C)

HSP 1 Score: 105 bits (263), Expect = 1.620e-28
Identity = 38/62 (61.29%), Postives = 51/62 (82.26%), Query Frame = 1
Query:    1 MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTVCLSLWKRVYPKW 186
            MFH PED++WFK +E+W+K G  G +K+PVGTHG MKC F+G ++QHD VC++L+KR YPKW
Sbjct:    8 MFHNPEDVKWFKPVEVWSKCGRRGRVKEPVGTHGAMKCIFNGVVQQHDIVCMNLYKRAYPKW 69          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10721.979.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
UPI000C1CE1734.610e-3266.67pre-rRNA-processing protein TSR1 homolog n=1 Tax=O... [more]
A0A813BGX2_9DINO1.940e-3069.57Tsr1 protein (Fragment) n=1 Tax=Symbiodinium sp. K... [more]
A0A0A9K8S9_ARUDO4.040e-3070.97DUF663 domain-containing protein n=2 Tax=Arundo do... [more]
A0A2P2M9D1_RHIMU4.700e-3065.67DUF663 domain-containing protein n=1 Tax=Rhizophor... [more]
UPI0011D2A8114.470e-2965.67pre-rRNA-processing protein TSR1 homolog n=1 Tax=S... [more]
L8H0X3_ACACA6.270e-2959.74Bms1-type G domain-containing protein n=1 Tax=Acan... [more]
A0A0A9D3H5_ARUDO6.310e-2967.74DUF663 domain-containing protein n=1 Tax=Arundo do... [more]
A0A835LN62_9MAGN8.450e-2966.67Bms1-type G domain-containing protein n=1 Tax=Copt... [more]
A0A7J8NUV3_GOSRA1.020e-2864.18DUF663 domain-containing protein (Fragment) n=3 Ta... [more]
UPI000539EC6C1.620e-2861.29pre-rRNA-processing protein TSR1 homolog n=1 Tax=C... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10721contigS-firma_F_contig10721:2476..2744 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog4432.XP_010266135.1
PFAMsAARP2CN,RIBIOP_C
Max annot lvl35493|Streptophyta
KEGG koko:K14799
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005730,GO:0031974,GO:0031981,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0070013
Evalue1.23e-28
EggNOG OGsCOG5177@1|root,KOG1980@2759|Eukaryota,37PP3@33090|Viridiplantae,3GC9I@35493|Streptophyta
DescriptionPre-rRNA-processing protein TSR1 homolog
COG categoryS
BRITEko00000,ko03009
Hectar predicted targeting categoryother localisation
Exons2
Model size207
Cds size207
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815613.40167-CDS-S-firma_F_contig10721:2475..26551622815613.40167-CDS-S-firma_F_contig10721:2475..2655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2476..2655 -
1696949454.2833667-CDS-S-firma_F_contig10721:2475..26551696949454.2833667-CDS-S-firma_F_contig10721:2475..2655Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2476..2655 -
1622815613.418027-CDS-S-firma_F_contig10721:2717..27441622815613.418027-CDS-S-firma_F_contig10721:2717..2744Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2718..2744 -
1696949454.2952437-CDS-S-firma_F_contig10721:2717..27441696949454.2952437-CDS-S-firma_F_contig10721:2717..2744Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10721 2718..2744 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10721.979.1prot_S-firma_F_contig10721.979.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10721 2476..2744 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10721.979.1

>prot_S-firma_F_contig10721.979.1 ID=prot_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=69bp
MFHTPEDIRWFKSIELWTKYGHTGHIKDPVGTHGRMKCEFSGNIKQHDTV
CLSLWKRVYPKWGPSYRPL
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mRNA from alignment at S-firma_F_contig10721:2476..2744-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10721.979.1 ID=mRNA_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=269bp|location=Sequence derived from alignment at S-firma_F_contig10721:2476..2744- (Sphaerotrichia firma ET2_F female)
ATGTTCCACACCCCGGAGGACATTCGGGTGGGTTTTTGGGGTTGTGCTTT TTTGTTTGTGGAGTGTGTGACGCCCTGCTGTCCACGCAGTGGTTCAAATC CATCGAGCTGTGGACAAAGTACGGCCACACGGGGCACATCAAGGACCCGG TGGGCACCCACGGCCGCATGAAGTGCGAGTTCAGCGGCAACATCAAGCAG CACGATACCGTGTGCCTGTCCCTGTGGAAGCGGGTGTACCCCAAGTGGGG CCCGTCGTACCGCCCCCTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10721:2476..2744-

>mRNA_S-firma_F_contig10721.979.1 ID=mRNA_S-firma_F_contig10721.979.1|Name=mRNA_S-firma_F_contig10721.979.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=414bp|location=Sequence derived from alignment at S-firma_F_contig10721:2476..2744- (Sphaerotrichia firma ET2_F female)
ATGTTCCACACCCCGGAGGACATTCGGATGTTCCACACCCCGGAGGACAT
TCGGTGGTTCAAATCCATCGAGCTGTGGACAAAGTACGGCCACACGGGGC
ACATCAAGGACCCGGTGGGCACCCACGGCCGCATGAAGTGCGAGTTCAGC
GGCAACATCAAGCAGCACGATACCGTGTGCCTGTCCCTGTGGAAGCGGGT
GTACCCCAAGTGGGGCCCGTCGTACCGCCCCCTCTGGTTCAAATCCATCG
AGCTGTGGACAAAGTACGGCCACACGGGGCACATCAAGGACCCGGTGGGC
ACCCACGGCCGCATGAAGTGCGAGTTCAGCGGCAACATCAAGCAGCACGA
TACCGTGTGCCTGTCCCTGTGGAAGCGGGTGTACCCCAAGTGGGGCCCGT
CGTACCGCCCCCTC
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