mRNA_S-firma_F_contig10719.971.1 (mRNA) Sphaerotrichia firma ET2_F female
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Overview
Homology
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: D7FKS7_ECTSI (T-complex protein 1 subunit delta n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FKS7_ECTSI) HSP 1 Score: 133 bits (335), Expect = 3.200e-35 Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM 207
MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM
Sbjct: 462 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAVM 530
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: G3G4F3_ASCNO (T-complex protein 1 delta subunit (Fragment) n=18 Tax=Fucaceae TaxID=3010 RepID=G3G4F3_ASCNO) HSP 1 Score: 122 bits (306), Expect = 3.510e-35 Identity = 63/65 (96.92%), Postives = 65/65 (100.00%), Query Frame = 1
Query: 10 ISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
ISIVTELRSEHAKG+VGAGINVRKGTISDMYA+HVIQPVLVNSSALKLATECVGMILKIDDVVAV
Sbjct: 3 ISIVTELRSEHAKGRVGAGINVRKGTISDMYADHVIQPVLVNSSALKLATECVGMILKIDDVVAV 67
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A6S9KYX5_HETAK (T-complex protein 1 subunit delta n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A6S9KYX5_HETAK) HSP 1 Score: 102 bits (253), Expect = 1.010e-23 Identity = 50/68 (73.53%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
MNPI++VTELRS H++G+ GAGINVR+G +SDMY E V+QP+LV+SSAL LATECV MILKIDDVV+V
Sbjct: 464 MNPIALVTELRSRHSEGEGGAGINVRRGVVSDMYRERVVQPLLVSSSALGLATECVTMILKIDDVVSV 531
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A8K0I3Z2_COCNU (Putative T-complex protein 1 subunit delta n=1 Tax=Cocos nucifera TaxID=13894 RepID=A0A8K0I3Z2_COCNU) HSP 1 Score: 94.7 bits (234), Expect = 2.280e-23 Identity = 44/68 (64.71%), Postives = 60/68 (88.24%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
+NPI+IVTELR+ HA+G++ AGINVRKG I+D+ E+V+QP+LV++SA+ LATECV MILKIDD++ V
Sbjct: 69 LNPIAIVTELRNRHAQGEINAGINVRKGQITDILEENVVQPLLVSTSAITLATECVRMILKIDDIITV 136
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A699PHT6_TANCI (T-complex protein 1 subunit delta (Fragment) n=1 Tax=Tanacetum cinerariifolium TaxID=118510 RepID=A0A699PHT6_TANCI) HSP 1 Score: 94.0 bits (232), Expect = 4.110e-23 Identity = 43/68 (63.24%), Postives = 61/68 (89.71%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
+NPI+IVTELR+ HA+G++ AGINVRKG I++++ E+V+QP+LV++SA+ LATECV M+LKIDD+V V
Sbjct: 18 LNPITIVTELRNRHAQGEINAGINVRKGQITNIWEENVVQPLLVSTSAITLATECVRMVLKIDDIVTV 85
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: D5A9J5_PICSI (Uncharacterized protein n=1 Tax=Picea sitchensis TaxID=3332 RepID=D5A9J5_PICSI) HSP 1 Score: 91.7 bits (226), Expect = 6.400e-22 Identity = 43/68 (63.24%), Postives = 58/68 (85.29%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
+NPI+IVTELR+ HA G++ GINVRKG I+++ E+V+QP+LV++SA+ LATECV MILKIDD+V V
Sbjct: 90 LNPIAIVTELRNRHANGEINTGINVRKGQITNILEENVVQPLLVSTSAISLATECVRMILKIDDIVTV 157
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A0A9YB85_LYGHE (T-complex protein 1 subunit delta n=1 Tax=Lygus hesperus TaxID=30085 RepID=A0A0A9YB85_LYGHE) HSP 1 Score: 90.9 bits (224), Expect = 9.210e-22 Identity = 43/66 (65.15%), Postives = 56/66 (84.85%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVV 198
+ PISIVTELR+ HA V AG+NVRKG ++DM E+V+QP+LV++SA++LATECV MILKIDDV+
Sbjct: 76 LQPISIVTELRNAHASNNVNAGVNVRKGCVTDMVEENVVQPLLVSTSAVRLATECVMMILKIDDVI 141
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A835YW20_9STRA (T-complex protein 1 subunit delta n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YW20_9STRA) HSP 1 Score: 96.3 bits (238), Expect = 1.150e-21 Identity = 48/67 (71.64%), Postives = 56/67 (83.58%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVA 201
+NPI VTELR++H G GAGINVR G I+DMY V+QP+LV+SSA+KLATECVGMILKIDDVVA
Sbjct: 460 LNPIQKVTELRAKHGAGVSGAGINVRSGEITDMYESGVVQPMLVSSSAIKLATECVGMILKIDDVVA 526
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: UPI0009E4460C (T-complex protein 1 subunit delta-like n=1 Tax=Phalaenopsis equestris TaxID=78828 RepID=UPI0009E4460C) HSP 1 Score: 89.7 bits (221), Expect = 1.820e-21 Identity = 44/68 (64.71%), Postives = 57/68 (83.82%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
+NPI IVTELR+ HAKG+ AGINVRKG I+++ E+V+QP+LV++SA+ LA ECV MILKIDD+V V
Sbjct: 63 LNPIFIVTELRNRHAKGETNAGINVRKGQITNILEENVVQPLLVSTSAVTLAIECVRMILKIDDIVTV 130
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Match: A0A7S0TCK7_9CHLO (Hypothetical protein n=1 Tax=Ostreococcus mediterraneus TaxID=1486918 RepID=A0A7S0TCK7_9CHLO) HSP 1 Score: 91.3 bits (225), Expect = 3.400e-21 Identity = 46/68 (67.65%), Postives = 54/68 (79.41%), Query Frame = 1
Query: 1 MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKLATECVGMILKIDDVVAV 204
+NPI IVTELR+ H G GINVRKGTISDM E+V+QP+LV SSAL LATECV M+LKIDD++ V
Sbjct: 144 LNPIEIVTELRNVHTAGNAYHGINVRKGTISDMKDENVLQPMLVTSSALSLATECVRMVLKIDDIIPV 211 The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10719.971.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-firma_F_contig10719.971.1 >prot_S-firma_F_contig10719.971.1 ID=prot_S-firma_F_contig10719.971.1|Name=mRNA_S-firma_F_contig10719.971.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=70bp MNPISIVTELRSEHAKGKVGAGINVRKGTISDMYAEHVIQPVLVNSSALKback to top mRNA from alignment at S-firma_F_contig10719:3207..3740- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-firma_F_contig10719.971.1 ID=mRNA_S-firma_F_contig10719.971.1|Name=mRNA_S-firma_F_contig10719.971.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=534bp|location=Sequence derived from alignment at S-firma_F_contig10719:3207..3740- (Sphaerotrichia firma ET2_F female)back to top Coding sequence (CDS) from alignment at S-firma_F_contig10719:3207..3740- >mRNA_S-firma_F_contig10719.971.1 ID=mRNA_S-firma_F_contig10719.971.1|Name=mRNA_S-firma_F_contig10719.971.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=420bp|location=Sequence derived from alignment at S-firma_F_contig10719:3207..3740- (Sphaerotrichia firma ET2_F female)back to top |