mRNA_S-firma_F_contig10676.913.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10676.913.1
Unique NamemRNA_S-firma_F_contig10676.913.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: F2U3E7_SALR5 (Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (strain ATCC 50818 / BSB-021) TaxID=946362 RepID=F2U3E7_SALR5)

HSP 1 Score: 380 bits (976), Expect = 3.760e-127
Identity = 186/335 (55.52%), Postives = 231/335 (68.96%), Query Frame = 1
Query:    1 SCDSGRSVVFNLVCDPSAPVSNPPNGTVEEFPRCTY--------NIEWYHPAACGVDKP---GAQCPTAAVPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQV-NVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDTEL 969
            +C +GR+VV   +C       N     V  FP   Y        ++  +   A GV +P      CPT +VP+PT  Q +Y  +EI+GLTHFNMATFV +GDPAC STNWN GVNCSNPAVFNPV L++ NW+ SY A+GAKHAVLTAKHGCGFL++ T T+LPNG  YGYGV R +VPSF R+V  EF   + AAGLG GFYYSTGNN+YL  + F   G LLPGQV NVT  EYN++VF H++ELW +YGN TEIW DHG+A  Q++ LQ++L   QP    FNG+G+ P+PVKWCGTESG P    WSTGC+   G+P ++++CPTGVDT L
Sbjct:    2 TCRAGRAVVHRFICARH----NKAEEAVAAFPLGAYGHLGPACVHMTVHRTNASGVCQPRHAATPCPTNSVPLPTLAQQRYQRHEIVGLTHFNMATFVHNGDPACSSTNWNQGVNCSNPAVFNPVKLDIDNWIASYKALGAKHAVLTAKHGCGFLLWSTNTSLPNGRPYGYGVQRPNVPSFPRDVVLEFSTKMQAAGLGHGFYYSTGNNFYLNRIDFKPAGALLPGQVVNVTDKEYNTLVFEHVRELWSRYGNLTEIWFDHGYAGDQKAALQQLLQQYQPHAAGFNGYGIMPSPVKWCGTESGTPPRGFWSTGCDASSGNPNATSYCPTGVDTTL 332          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A9UY68_MONBE (Alpha-L-fucosidase n=2 Tax=Monosiga brevicollis TaxID=81824 RepID=A9UY68_MONBE)

HSP 1 Score: 353 bits (905), Expect = 5.590e-115
Identity = 171/321 (53.27%), Postives = 215/321 (66.98%), Query Frame = 1
Query:    1 SCDSGRSVVFNLVCDPSAPVSNPPNGTVEEFPRCTYNIEWYHPAACGVDKPGAQCPTAAVPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDT 963
            +C  GR+ V   VCD +     P        P C         AAC  +     C T  VPVPT +Q  Y  +EIMGLTHFNMATFV DGDPAC+ TNWN GV+ S+ ++F+P  LN+SNWVE+Y AVGAKHAVLTAKHGCGFL+++T+TTLPNG EY + V R S PSF R+V  EF  TL AAGLG G+YYSTGNNY+L    F ++G  LPGQV++T ++YN++VF H++ELW ++G+  EIW DHG +  Q  +L  +L   QPQ   FNG G+  +P+KW GTESG  GYP W+TGC    GDPT+S +CP G DT
Sbjct:   82 TCPKGRATVTQYVCDRALTGVQPRGAEGWLDPWCVTVQRHETQAACRAEWSKMPCATNQVPVPTPEQAAYQRHEIMGLTHFNMATFVEDGDPACNPTNWNVGVHSSHASLFDPTRLNISNWVENYRAVGAKHAVLTAKHGCGFLLWNTSTTLPNGTEYPFAVARSSYPSFQRDVIAEFSSTLGAAGLGYGYYYSTGNNYFLNRDGFKRIGNPLPGQVDLTDEQYNTLVFEHVKELWTRFGSLFEIWFDHGVSADQDQQLAALLKQYQPQVVGFNGQGIMTSPIKWVGTESGLAGYPTWATGCSVAQGDPTASDYCPVGGDT 402          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A0A7S0P7P9_CAFRO (Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A7S0P7P9_CAFRO)

HSP 1 Score: 350 bits (897), Expect = 6.470e-113
Identity = 179/328 (54.57%), Postives = 217/328 (66.16%), Query Frame = 1
Query:    1 SCDSG-RSVVFNLVCDPSAPVSNPPNGTVEEFPRCTYNIEWYHPAACGVDKPGAQCPTAAVPVPTADQLKYITNEIMGLTHFNMATFVR-DGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLP---NGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDTEL 969
            +C +G R++V    CD +A     P+  V E P CT+ + W H A C      + C +AAVP PT DQL +   EI GLTHFNMATF   DGDPAC   NWN G N SNPA F P  LN+SNW+ESY A+GA + VLTAKHGCGFL+FDTA+ LP    G EY Y V R+ VPSFG++VA  +   +  AGLG G+YYST NN+Y G V   QLG LLPGQ+N+T  E++ +VF  ++ELW  YG  TE+WLDHG+  SQQ RLQ++LATLQP   AFNG GVS NP +W GTE G P YP+WSTG   Q GDPTS  + P   DT L
Sbjct:  148 ACPAGVRTLVVRGQCDATADARQGPDELVVENPTCTFTVSWRHKAFCSRPAESSSC-SAAVPTPTPDQLAWQRMEIGGLTHFNMATFSGVDGDPACSIFNWNVGPNTSNPATFAPTNLNISNWIESYKALGAGYGVLTAKHGCGFLLFDTASQLPARIGGGEYKYAVKRKGVPSFGQDVAALYAAAMREAGLGYGYYYSTTNNFYSGYVDSKQLGVLLPGQLNITYTEFDQLVFEQVKELWSNYGALTEVWLDHGYTGSQQKRLQDLLATLQPHAVAFNGLGVSNNPSRWVGTEDGTPPYPVWSTGTSGQ-GDPTSKVWNPAVADTTL 473          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A0A5A8ELI6_CAFRO (Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis TaxID=33653 RepID=A0A5A8ELI6_CAFRO)

HSP 1 Score: 350 bits (897), Expect = 5.110e-111
Identity = 179/328 (54.57%), Postives = 217/328 (66.16%), Query Frame = 1
Query:    1 SCDSG-RSVVFNLVCDPSAPVSNPPNGTVEEFPRCTYNIEWYHPAACGVDKPGAQCPTAAVPVPTADQLKYITNEIMGLTHFNMATFVR-DGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLP---NGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDTEL 969
            +C +G R++V    CD +A     P+  V E P CT+ + W H A C      + C +AAVP PT DQL +   EI GLTHFNMATF   DGDPAC   NWN G N SNPA F P  LN+SNW+ESY A+GA + VLTAKHGCGFL+FDTA+ LP    G EY Y V R+ VPSFG++VA  +   +  AGLG G+YYST NN+Y G V   QLG LLPGQ+N+T  E++ +VF  ++ELW  YG  TE+WLDHG+  SQQ RLQ++LATLQP   AFNG GVS NP +W GTE G P YP+WSTG   Q GDPTS  + P   DT L
Sbjct:  323 ACPAGVRTLVVRGQCDATADARQGPDELVVENPTCTFTVSWRHKAFCSRPAESSSC-SAAVPTPTPDQLAWQRMEIGGLTHFNMATFSGVDGDPACSIFNWNVGPNTSNPATFAPTNLNISNWIESYKALGAGYGVLTAKHGCGFLLFDTASQLPARIGGGEYKYAVKRKGVPSFGQDVAALYAAAMREAGLGYGYYYSTTNNFYSGYVDSKQLGVLLPGQLNITYTEFDQLVFEQVKELWSNYGALTEVWLDHGYTGSQQKRLQDLLATLQPHAVAFNGLGVSNNPSRWVGTEDGTPPYPVWSTGTSGQ-GDPTSKVWNPAVADTTL 648          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A9US81_MONBE (Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9US81_MONBE)

HSP 1 Score: 254 bits (648), Expect = 5.450e-81
Identity = 117/203 (57.64%), Postives = 152/203 (74.88%), Query Frame = 1
Query:  247 MATFVRDGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKW 855
            MATFV DGDPAC+ TNWN GV+ S+ ++F+P  LN+SNWVE+Y AVGAKHAVLTAKHGCGFL+++T+TTLPNG EY + V R S PSF R+V  EF  TL AAGLG G+YYSTGNNY+L    F ++G  LPGQV++T ++YN +VF H++ELW ++G+  EIW DHG +  Q  +L  +L   QPQ   FNG G+  +P+K+
Sbjct:    1 MATFVEDGDPACNPTNWNVGVHSSHASLFDPTRLNISNWVENYRAVGAKHAVLTAKHGCGFLLWNTSTTLPNGTEYPFAVARSSYPSFQRDVIAEFSSTLGAAGLGYGYYYSTGNNYFLNRDGFKRIGNPLPGQVDLTDEQYNILVFEHVKELWTRFGSLFEIWFDHGVSADQDQQLAALLKQYQPQVVGFNGQGIMTSPIKF 203          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A0A813FQ86_POLGL (Alpha-L-fucosidase n=1 Tax=Polarella glacialis TaxID=89957 RepID=A0A813FQ86_POLGL)

HSP 1 Score: 262 bits (669), Expect = 1.350e-80
Identity = 137/275 (49.82%), Postives = 176/275 (64.00%), Query Frame = 1
Query:  169 TAAVPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWN------TGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYL--GTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDTEL 969
            + +VPVPTA QL Y  +EI+ L HFNMAT+  DGDPAC+ +NWN      TG   S+PA FNP  LNVSNW ES  A+GAKHAVLTAKHGCG L++ T T LP+G EY Y V + +  +   +V +EF +T+  AG+G GFYYS  NN+YL  G         L+P Q NV+ +++ +I  + + ELW +YG  TE+W D G+  + Q ++  +L T QP   AF G+GVSPNP+ W GTESG P   +WSTG E   GDP S  FCP   DT L
Sbjct:   40 SVSVPVPTASQLMYQQHEIVALIHFNMATYANDGDPACNPSNWNVVAPNATGPT-SDPATFNPASLNVSNWAESMLALGAKHAVLTAKHGCGHLLWPTETPLPDGREYTYCVGKNA-SAIKIDVLQEFSETMKQAGIGHGFYYSLTNNFYLNVGGNTVQNSSFLIPRQENVSQEQFEAIALSQITELWSRYGPLTEVWFDGGYTSNMQGKIAALLRTYQPDAVAFGGYGVSPNPLGWVGTESGSPKGEVWSTGAEGV-GDPDSPIFCPKTCDTTL 311          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A9VEE7_MONBE (Alpha-L-fucosidase (Fragment) n=1 Tax=Monosiga brevicollis TaxID=81824 RepID=A9VEE7_MONBE)

HSP 1 Score: 223 bits (567), Expect = 1.720e-69
Identity = 103/165 (62.42%), Postives = 131/165 (79.39%), Query Frame = 1
Query:  247 MATFVRDGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWL 741
            MATFV DGDPAC+ TNWN GV+ S+ ++F+P  LN+SNWVE+Y AVGAKHAVLTAKHGCGFL+++T+TTLPNG EY + V R S PSF R+V  EF  TL AAGLG G+YYSTGNNY+L    F ++G  LPGQV++T ++YN +VF H++ELW ++G+  EIWL
Sbjct:    1 MATFVEDGDPACNPTNWNVGVHSSHASLFDPTRLNISNWVENYRAVGAKHAVLTAKHGCGFLLWNTSTTLPNGTEYPFAVARSSYPSFQRDVIAEFSSTLGAAGLGYGYYYSTGNNYFLNRDGFKRIGNPLPGQVDLTDEQYNILVFEHVKELWTRFGSLFEIWL 165          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A0A7S1W882_ALECA (Alpha-L-fucosidase (Fragment) n=1 Tax=Alexandrium catenella TaxID=2925 RepID=A0A7S1W882_ALECA)

HSP 1 Score: 209 bits (532), Expect = 3.940e-63
Identity = 108/223 (48.43%), Postives = 142/223 (63.68%), Query Frame = 1
Query:  178 VPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWN------TGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHFN-QLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNG 825
            +PVPT  QL+Y  +EI  L HFNMATF  +GDP C++ NWN      TG   S+P  FNPV LN+SNW ES  A+GAKHAVLTAKHGCG+L++ T T LP+G E+ Y V ++   +  R+V +EF DT+   G+G G+YYS G+N++        Q   LLPGQV +T +++ +I  A + ELW  YG  TEIW D G+  S + RL EML  +QP    F G
Sbjct:   23 LPVPTPPQLEYQRHEISALIHFNMATFAENGDPGCNAKNWNKLAPPATGPT-SDPVTFNPVKLNISNWAESMLALGAKHAVLTAKHGCGYLLWPTKTRLPDGSEFTYCVGKER-SAIKRDVIREFSDTMRQHGIGYGYYYSLGSNFHFDVKGMKVQNSSLLPGQVRLTQEQFEAISLAQVAELWSNYGPLTEIWFDGGYQSSLKGRLVEMLRRMQPNATGFGG 243          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: X6NXY5_RETFI (Alpha-L-fucosidase n=1 Tax=Reticulomyxa filosa TaxID=46433 RepID=X6NXY5_RETFI)

HSP 1 Score: 207 bits (528), Expect = 1.840e-62
Identity = 110/232 (47.41%), Postives = 137/232 (59.05%), Query Frame = 1
Query:  178 VPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWNTGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPN-GHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTV-HFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTE 867
            V +PT  Q+ Y TNEI+GLTHFNM T+  D DP+C+  NWN      NP  FNP  LN+SNW  SY  +GAK AVLTAKHGCGF ++ T  T+P+ GH Y Y V   S P    ++ + FVD +    LG GFYYS  NN+YL    H  Q   LLPGQV VT  ++  I    L EL+  YG  TE W D G +     R+Q+++   QP    FNG  VS NP++W GTE
Sbjct:   17 VVIPTQYQVSYQTNEIVGLTHFNMGTYYGDSDPSCNPENWNMS---GNPLSFNPYALNISNWAVSYKNLGAKSAVLTAKHGCGFCLWPTNVTIPSTGHMYNYSVAFSSYP---HDIVRLFVDEMKKNNLGYGFYYSLTNNFYLNVDNHMVQNTTLLPGQVQVTQQQFEDIAMEQLTELFTSYGELTEFWFDGGTS-DLTPRVQQLIQKYQPNMVVFNGQNVSDNPIRWVGTE 241          
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Match: A0A7S2TWL6_9EUKA (Alpha-L-fucosidase (Fragment) n=1 Tax=Lotharella oceanica TaxID=641309 RepID=A0A7S2TWL6_9EUKA)

HSP 1 Score: 206 bits (525), Expect = 3.440e-61
Identity = 100/220 (45.45%), Postives = 129/220 (58.64%), Query Frame = 1
Query:  316 SNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTATTLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYYLGTVHF--NQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHGFAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWSTGCEQQHGDPTSSTFCPTGVDTEL 969
            S+P+ FNPV LN + W E  +++GA+HA+LTAKHGCGF ++ T    P+G  YGY V       FGR+V  EF + +    +G GFYYS  NN+YL   H        LLPGQ  VT  E+  +    + ELW  YGN TE+W D G+    +S LQ++L   QP   AF G GVSP+P+ W GTE+G PG  LWS+G    HG+P    FCP   DT L
Sbjct:    1 SDPSSFNPVDLNTTQWAEVMHSLGAQHAILTAKHGCGFALWPTTYKFPDGSRYGYDV----ASGFGRDVLLEFSEAMAKHNIGHGFYYSLTNNFYLDVYHHLVQNTTNLLPGQKRVTQQEFEDLALFQVSELWQNYGNLTEVWFDGGYTGDMKSSLQDLLTRFQPNAAAFGGAGVSPSPLCWVGTETGIPGGELWSSGYSTPHGNPNDPHFCPRACDTTL 216          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10676.913.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
F2U3E7_SALR53.760e-12755.52Alpha-L-fucosidase n=1 Tax=Salpingoeca rosetta (st... [more]
A9UY68_MONBE5.590e-11553.27Alpha-L-fucosidase n=2 Tax=Monosiga brevicollis Ta... [more]
A0A7S0P7P9_CAFRO6.470e-11354.57Alpha-L-fucosidase n=1 Tax=Cafeteria roenbergensis... [more]
A0A5A8ELI6_CAFRO5.110e-11154.57Alpha-L-fucosidase n=4 Tax=Cafeteria roenbergensis... [more]
A9US81_MONBE5.450e-8157.64Alpha-L-fucosidase n=1 Tax=Monosiga brevicollis Ta... [more]
A0A813FQ86_POLGL1.350e-8049.82Alpha-L-fucosidase n=1 Tax=Polarella glacialis Tax... [more]
A9VEE7_MONBE1.720e-6962.42Alpha-L-fucosidase (Fragment) n=1 Tax=Monosiga bre... [more]
A0A7S1W882_ALECA3.940e-6348.43Alpha-L-fucosidase (Fragment) n=1 Tax=Alexandrium ... [more]
X6NXY5_RETFI1.840e-6247.41Alpha-L-fucosidase n=1 Tax=Reticulomyxa filosa Tax... [more]
A0A7S2TWL6_9EUKA3.440e-6145.45Alpha-L-fucosidase (Fragment) n=1 Tax=Lotharella o... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10676contigS-firma_F_contig10676:200..1402 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog946362.XP_004996324.1
PFAMsAlpha_L_fucos,F5_F8_type_C
Max annot lvl33154|Opisthokonta
Evalue6.17e-128
EggNOG OGsCOG3669@1|root,KOG3340@2759|Eukaryota,3A5J7@33154|Opisthokonta
DescriptionAlpha-L-fucosidase
COG categoryG
Hectar predicted targeting categoryother localisation
Exons5
Model size969
Cds size969
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10676.913.1prot_S-firma_F_contig10676.913.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10676 200..1402 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.9881086-CDS-S-firma_F_contig10676:199..2981622815606.9881086-CDS-S-firma_F_contig10676:199..298Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 200..298 -
1696949449.9042492-CDS-S-firma_F_contig10676:199..2981696949449.9042492-CDS-S-firma_F_contig10676:199..298Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 200..298 -
1622815607.0034635-CDS-S-firma_F_contig10676:356..5891622815607.0034635-CDS-S-firma_F_contig10676:356..589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 357..589 -
1696949449.9258022-CDS-S-firma_F_contig10676:356..5891696949449.9258022-CDS-S-firma_F_contig10676:356..589Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 357..589 -
1622815607.0270758-CDS-S-firma_F_contig10676:644..7051622815607.0270758-CDS-S-firma_F_contig10676:644..705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 645..705 -
1696949449.9361813-CDS-S-firma_F_contig10676:644..7051696949449.9361813-CDS-S-firma_F_contig10676:644..705Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 645..705 -
1622815607.037301-CDS-S-firma_F_contig10676:765..10771622815607.037301-CDS-S-firma_F_contig10676:765..1077Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 766..1077 -
1696949449.9458795-CDS-S-firma_F_contig10676:765..10771696949449.9458795-CDS-S-firma_F_contig10676:765..1077Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 766..1077 -
1622815607.0486572-CDS-S-firma_F_contig10676:1138..14021622815607.0486572-CDS-S-firma_F_contig10676:1138..1402Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 1139..1402 -
1696949449.9559748-CDS-S-firma_F_contig10676:1138..14021696949449.9559748-CDS-S-firma_F_contig10676:1138..1402Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10676 1139..1402 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10676.913.1

>prot_S-firma_F_contig10676.913.1 ID=prot_S-firma_F_contig10676.913.1|Name=mRNA_S-firma_F_contig10676.913.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=323bp
SCDSGRSVVFNLVCDPSAPVSNPPNGTVEEFPRCTYNIEWYHPAACGVDK
PGAQCPTAAVPVPTADQLKYITNEIMGLTHFNMATFVRDGDPACDSTNWN
TGVNCSNPAVFNPVGLNVSNWVESYNAVGAKHAVLTAKHGCGFLIFDTAT
TLPNGHEYGYGVMRQSVPSFGRNVAKEFVDTLTAAGLGTGFYYSTGNNYY
LGTVHFNQLGKLLPGQVNVTMDEYNSIVFAHLQELWGQYGNFTEIWLDHG
FAPSQQSRLQEMLATLQPQTNAFNGFGVSPNPVKWCGTESGKPGYPLWST
GCEQQHGDPTSSTFCPTGVDTEL
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mRNA from alignment at S-firma_F_contig10676:200..1402-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10676.913.1 ID=mRNA_S-firma_F_contig10676.913.1|Name=mRNA_S-firma_F_contig10676.913.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=1203bp|location=Sequence derived from alignment at S-firma_F_contig10676:200..1402- (Sphaerotrichia firma ET2_F female)
AGCTGCGACTCTGGGCGCAGCGTGGTGTTTAACCTTGTGTGCGACCCGTC GGCGCCGGTGTCCAACCCGCCAAACGGCACGGTGGAGGAGTTCCCGCGGT GCACGTACAACATTGAGTGGTACCACCCGGCGGCGTGCGGGGTGGACAAG CCCGGCGCGCAGTGCCCGACGGCGGCGGTGCCGGTGCCGACCGCGGACCA ATTGAAGTACATCACGAACGAGATTATGGGGCTGACGCATTTCAACATGG CGACGTTTGTGCGGGTGGGTTGGGTTGCCCCTGTTTTTCGTTTGACCTGT TTGTTGTTTTACGGTCACGCTTCAGGACGGCGACCCGGCGTGCGACTCCA CAAACTGGAACACGGGCGTCAACTGCTCCAACCCGGCGGTGTTCAACCCC GTCGGCCTCAACGTCTCCAACTGGGTGGAAAGCTACAACGCTGTCGGCGC CAAACACGCCGTCCTCACCGCCAAGCACGGGTGTGGGTTCCTCATTTTTG ACACGGCCACCACCCTCCCCAACGGCCACGAGTACGGGTACGGCGTCATG CGGCAGTCGGTGCCGTCCTTCGGGCGGAACGTGGCCAAGGAGTTTGTGGA CACCTTGACAGCTGCTGGGCTTGGGACCGGGTTTTACGTGCGTGTGTGGT GGGTGTGGTGGGTTGTGGGGGTGTTTCATGTGTTCTCTCGCTGGCAGTAC TCCACCGGTAACAACTACTACTTGGGCACGGTTCACTTCAACCAACTTGG CAAACTCTGTGCGTGAGGGTGTCCCCCGCACCCTGGTCCACCTGACCCCC TCCTTGTTGCCAGTGCCGGGGCAAGTCAACGTCACGATGGACGAGTACAA CTCCATCGTGTTTGCGCACCTGCAGGAGCTTTGGGGGCAGTACGGCAACT TCACCGAGATTTGGCTGGACCACGGGTTTGCGCCCAGCCAGCAGAGCCGC CTGCAGGAGATGCTGGCCACCCTTCAACCCCAAACCAATGCCTTCAACGG CTTCGGCGTGTCACCCAACCCCGTCAAGTGGTGCGGCACGGAGAGCGTGC GTGTGCCCTGTGTGCGTCTGTGTTACATCCTTGTTGCCTCATGTGTGGCC GCAGGGCAAGCCGGGGTACCCCCTTTGGTCCACCGGCTGCGAGCAGCAGC ACGGCGACCCGACGTCTTCCACCTTTTGCCCCACTGGTGTGGACACTGAA CTG
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Coding sequence (CDS) from alignment at S-firma_F_contig10676:200..1402-

>mRNA_S-firma_F_contig10676.913.1 ID=mRNA_S-firma_F_contig10676.913.1|Name=mRNA_S-firma_F_contig10676.913.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1938bp|location=Sequence derived from alignment at S-firma_F_contig10676:200..1402- (Sphaerotrichia firma ET2_F female)
AGCTGCGACTCTGGGCGCAGCGTGGTGTTTAACCTTGTGTGCGACCCGTC
GGCGCCGGTGTCCAACCCGCCAAACGGCACGGTGGAGGAGTTCCCGCGGT
GCACGTACAACATTGAGTGGTACCACCCGGCGGCGTGCGGGGTGGACAAG
CCCGGCGCGCAGTGCCCGACGGCGGCGGTGCCGGTGCCGACCGCGGACCA
ATTGAAGTACATCACGAACGAGATTATGGGGCTGACGCATTTCAACATGG
CGACGTTTGTGCGGAGCTGCGACTCTGGGCGCAGCGTGGTGTTTAACCTT
GTGTGCGACCCGTCGGCGCCGGTGTCCAACCCGCCAAACGGCACGGTGGA
GGAGTTCCCGCGGTGCACGTACAACATTGAGTGGTACCACCCGGCGGCGT
GCGGGGTGGACAAGCCCGGCGCGCAGTGCCCGACGGCGGCGGTGCCGGTG
CCGACCGCGGACCAATTGAAGTACATCACGAACGAGATTATGGGGCTGAC
GCATTTCAACATGGCGACGTTTGTGCGGGACGGCGACCCGGCGTGCGACT
CCACAAACTGGAACACGGGCGTCAACTGCTCCAACCCGGCGGTGTTCAAC
CCCGTCGGCCTCAACGTCTCCAACTGGGTGGAAAGCTACAACGCTGTCGG
CGCCAAACACGCCGTCCTCACCGCCAAGCACGGGTGTGGGTTCCTCATTT
TTGACACGGCCACCACCCTCCCCAACGGCCACGAGTACGGGTACGGCGTC
ATGCGGCAGTCGGTGCCGTCCTTCGGGCGGAACGTGGCCAAGGAGTTTGT
GGACACCTTGACAGCTGCTGGGCTTGGGACCGGGTTTTACGACGGCGACC
CGGCGTGCGACTCCACAAACTGGAACACGGGCGTCAACTGCTCCAACCCG
GCGGTGTTCAACCCCGTCGGCCTCAACGTCTCCAACTGGGTGGAAAGCTA
CAACGCTGTCGGCGCCAAACACGCCGTCCTCACCGCCAAGCACGGGTGTG
GGTTCCTCATTTTTGACACGGCCACCACCCTCCCCAACGGCCACGAGTAC
GGGTACGGCGTCATGCGGCAGTCGGTGCCGTCCTTCGGGCGGAACGTGGC
CAAGGAGTTTGTGGACACCTTGACAGCTGCTGGGCTTGGGACCGGGTTTT
ACTACTCCACCGGTAACAACTACTACTTGGGCACGGTTCACTTCAACCAA
CTTGGCAAACTCTTACTCCACCGGTAACAACTACTACTTGGGCACGGTTC
ACTTCAACCAACTTGGCAAACTCTTGCCGGGGCAAGTCAACGTCACGATG
GACGAGTACAACTCCATCGTGTTTGCGCACCTGCAGGAGCTTTGGGGGCA
GTACGGCAACTTCACCGAGATTTGGCTGGACCACGGGTTTGCGCCCAGCC
AGCAGAGCCGCCTGCAGGAGATGCTGGCCACCCTTCAACCCCAAACCAAT
GCCTTCAACGGCTTCGGCGTGTCACCCAACCCCGTCAAGTGGTGCGGCAC
GGAGAGCTGCCGGGGCAAGTCAACGTCACGATGGACGAGTACAACTCCAT
CGTGTTTGCGCACCTGCAGGAGCTTTGGGGGCAGTACGGCAACTTCACCG
AGATTTGGCTGGACCACGGGTTTGCGCCCAGCCAGCAGAGCCGCCTGCAG
GAGATGCTGGCCACCCTTCAACCCCAAACCAATGCCTTCAACGGCTTCGG
CGTGTCACCCAACCCCGTCAAGTGGTGCGGCACGGAGAGCGGCAAGCCGG
GGTACCCCCTTTGGTCCACCGGCTGCGAGCAGCAGCACGGCGACCCGACG
TCTTCCACCTTTTGCCCCACTGGTGTGGACACTGAACTGGGCAAGCCGGG
GTACCCCCTTTGGTCCACCGGCTGCGAGCAGCAGCACGGCGACCCGACGT
CTTCCACCTTTTGCCCCACTGGTGTGGACACTGAACTG
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