mRNA_S-firma_F_contig1067.906.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig1067.906.1
Unique NamemRNA_S-firma_F_contig1067.906.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: D8LCZ8_ECTSI (3-methyl-2-oxobutanoate hydroxymethyltransferase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LCZ8_ECTSI)

HSP 1 Score: 124 bits (312), Expect = 4.060e-32
Identity = 57/64 (89.06%), Postives = 63/64 (98.44%), Query Frame = 1
Query:  181 DVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            DV+KIRR+G+RKVTMVTAYDYPSA+HVCRAGIDILLVGDS+GMVELGY+TTQPVTV DMLHHCK
Sbjct:    2 DVVKIRRRGERKVTMVTAYDYPSAVHVCRAGIDILLVGDSVGMVELGYDTTQPVTVGDMLHHCK 65          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A835Z145_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z145_9STRA)

HSP 1 Score: 109 bits (273), Expect = 1.420e-26
Identity = 48/63 (76.19%), Postives = 58/63 (92.06%), Query Frame = 1
Query:  184 VIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            V+K+ R+ KRK+TMVTAYDYPS++HVC AGIDI LVGDS+GMV LGYETTQPVTV++MLHHC+
Sbjct:    3 VLKLAREKKRKITMVTAYDYPSSVHVCEAGIDIALVGDSVGMVTLGYETTQPVTVEEMLHHCR 65          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A8J9X398_PHATR (Hypothetical protein (Fragment) n=3 Tax=Phaeodactylum tricornutum TaxID=2850 RepID=A0A8J9X398_PHATR)

HSP 1 Score: 99.0 bits (245), Expect = 2.820e-24
Identity = 47/68 (69.12%), Postives = 55/68 (80.88%), Query Frame = 1
Query:  166 KTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHC 369
            K S   +   RR GK K++MVTAYDYPSA+HV RAG+DILLVGDS+ MVELGYE TQP+T+ DMLHHC
Sbjct:    3 KVSALSLTSKRRHGK-KISMVTAYDYPSAVHVARAGMDILLVGDSVAMVELGYENTQPITLRDMLHHC 69          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A024GNC3_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Albugo candida TaxID=65357 RepID=A0A024GNC3_9STRA)

HSP 1 Score: 101 bits (252), Expect = 1.810e-23
Identity = 48/71 (67.61%), Postives = 59/71 (83.10%), Query Frame = 1
Query:  160 RKKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            RKK + TD+  ++R+GK  +TM+TAYDYPSA+HV  AG D+LLVGDSLGMVELG  TT PVT+DDM+HHCK
Sbjct:    3 RKKVTATDLRVLKRRGK-PITMITAYDYPSAVHVDLAGFDVLLVGDSLGMVELGMSTTLPVTLDDMIHHCK 72          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A7R9W7M1_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase (Fragment) n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W7M1_9STRA)

HSP 1 Score: 97.4 bits (241), Expect = 2.620e-23
Identity = 45/67 (67.16%), Postives = 58/67 (86.57%), Query Frame = 1
Query:  172 SVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            +V  ++  +R+GK K+TMVTAYDYPSA+HV RAGID+LLVGDS  MVELG+ETTQP+T+D M+HHC+
Sbjct:   36 TVLSLLHKKRKGK-KITMVTAYDYPSALHVDRAGIDVLLVGDSCAMVELGFETTQPMTLDQMVHHCQ 101          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A7R9UF57_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UF57_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 3.510e-23
Identity = 42/54 (77.78%), Postives = 50/54 (92.59%), Query Frame = 1
Query:  211 RKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            +K++M TAYD+PSA+HV RAG+D+LLVGDS GMVELGY TTQPVT+DDMLHHCK
Sbjct:    1 QKISMCTAYDFPSALHVDRAGMDVLLVGDSCGMVELGYATTQPVTMDDMLHHCK 54          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A7S2R7Y5_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase (Fragment) n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2R7Y5_9STRA)

HSP 1 Score: 97.1 bits (240), Expect = 8.720e-23
Identity = 46/70 (65.71%), Postives = 58/70 (82.86%), Query Frame = 1
Query:  163 KKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            KK +   +   +R+G RK++MVTAYDYPSA+HV RAGIDILLVGDS  MVELG+ETTQP+T+D M+HHC+
Sbjct:   14 KKVTTLSLTSQKRRG-RKISMVTAYDYPSALHVDRAGIDILLVGDSCAMVELGFETTQPMTLDQMVHHCQ 82          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: K0SSA9_THAOC (3-methyl-2-oxobutanoate hydroxymethyltransferase n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0SSA9_THAOC)

HSP 1 Score: 100 bits (250), Expect = 1.140e-22
Identity = 47/71 (66.20%), Postives = 58/71 (81.69%), Query Frame = 1
Query:  160 RKKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            R K   T  I+ +++  +K+TMVTAYDYPSA+HV RAGIDILLVGDS  MVELGYETTQP+T++ MLHHC+
Sbjct:   98 RPKKVTTLTIRAKKRRNQKITMVTAYDYPSAVHVDRAGIDILLVGDSCAMVELGYETTQPMTLEQMLHHCR 168          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A7S2XAE6_9EUKA (3-methyl-2-oxobutanoate hydroxymethyltransferase (Fragment) n=2 Tax=Lotharella TaxID=74819 RepID=A0A7S2XAE6_9EUKA)

HSP 1 Score: 100 bits (248), Expect = 1.360e-22
Identity = 48/71 (67.61%), Postives = 60/71 (84.51%), Query Frame = 1
Query:  160 RKKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            R+K S  ++I  RR+G+R +TMVTAYDYPSA+H   AGID++LVGDS GMVELGY+TTQPVT+D+MLHH K
Sbjct:   49 RRKMSAMELIAKRRRGER-ITMVTAYDYPSALHCDLAGIDVVLVGDSCGMVELGYDTTQPVTIDEMLHHAK 118          
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Match: A0A6T8L3U3_9STRA (3-methyl-2-oxobutanoate hydroxymethyltransferase (Fragment) n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A6T8L3U3_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.450e-22
Identity = 46/71 (64.79%), Postives = 60/71 (84.51%), Query Frame = 1
Query:  160 RKKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDSLGMVELGYETTQPVTVDDMLHHCK 372
            +K TS+T +  ++R  K K++MVTAYDYPSA+HV RAGID++LVGDS  MVELGY TTQP+T+D+M+HHCK
Sbjct:   40 KKVTSLT-LASMKRHSK-KISMVTAYDYPSALHVDRAGIDVILVGDSCAMVELGYSTTQPITMDEMIHHCK 108          
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1067.906.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LCZ8_ECTSI4.060e-3289.063-methyl-2-oxobutanoate hydroxymethyltransferase n... [more]
A0A835Z145_9STRA1.420e-2676.193-methyl-2-oxobutanoate hydroxymethyltransferase n... [more]
A0A8J9X398_PHATR2.820e-2469.12Hypothetical protein (Fragment) n=3 Tax=Phaeodacty... [more]
A0A024GNC3_9STRA1.810e-2367.613-methyl-2-oxobutanoate hydroxymethyltransferase n... [more]
A0A7R9W7M1_9STRA2.620e-2367.163-methyl-2-oxobutanoate hydroxymethyltransferase (... [more]
A0A7R9UF57_9STRA3.510e-2377.783-methyl-2-oxobutanoate hydroxymethyltransferase (... [more]
A0A7S2R7Y5_9STRA8.720e-2365.713-methyl-2-oxobutanoate hydroxymethyltransferase (... [more]
K0SSA9_THAOC1.140e-2266.203-methyl-2-oxobutanoate hydroxymethyltransferase n... [more]
A0A7S2XAE6_9EUKA1.360e-2267.613-methyl-2-oxobutanoate hydroxymethyltransferase (... [more]
A0A6T8L3U3_9STRA1.450e-2264.793-methyl-2-oxobutanoate hydroxymethyltransferase (... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1067contigS-firma_F_contig1067:128..499 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LCZ8
Preferred namePANB
PFAMsPantoate_transf
Max annot lvl2759|Eukaryota
KEGG rclassRC00022,RC00200
KEGG koko:K00606
KEGG ReactionR01226
KEGG Pathwayko00770,ko01100,ko01110,map00770,map01100,map01110
KEGG ModuleM00119
Evalue6.65e-33
EggNOG OGsCOG0413@1|root,KOG2949@2759|Eukaryota
Ec32 ortholog descriptionPyruvate/Phosphoenolpyruvate kinase-like domain
Ec32 orthologEc-01_001700.1
EC2.1.2.11
Description3-methyl-2-oxobutanoate hydroxymethyltransferase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categorymitochondrion
Exons1
Model size372
Cds size372
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815606.1756127-CDS-S-firma_F_contig1067:127..4991622815606.1756127-CDS-S-firma_F_contig1067:127..499Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1067 128..499 -
1696949449.326379-CDS-S-firma_F_contig1067:127..4991696949449.326379-CDS-S-firma_F_contig1067:127..499Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig1067 128..499 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1067.906.1prot_S-firma_F_contig1067.906.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig1067 128..499 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig1067.906.1

>prot_S-firma_F_contig1067.906.1 ID=prot_S-firma_F_contig1067.906.1|Name=mRNA_S-firma_F_contig1067.906.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=124bp
RPQLWSCNRRRPTSLACGCGRRTAAAATLSTSTTPQGPAPLAAKEPSPPP
APVRKKTSVTDVIKIRRQGKRKVTMVTAYDYPSAIHVCRAGIDILLVGDS
LGMVELGYETTQPVTVDDMLHHCK
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mRNA from alignment at S-firma_F_contig1067:128..499-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig1067.906.1 ID=mRNA_S-firma_F_contig1067.906.1|Name=mRNA_S-firma_F_contig1067.906.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=372bp|location=Sequence derived from alignment at S-firma_F_contig1067:128..499- (Sphaerotrichia firma ET2_F female)
AGGCCACAGCTGTGGTCTTGCAACCGTCGTCGTCCAACTAGCCTGGCCTG TGGCTGTGGGCGGAGGACTGCGGCGGCAGCAACGCTCTCAACGTCGACAA CACCACAAGGACCGGCGCCCTTGGCTGCGAAAGAACCATCGCCGCCACCG GCTCCCGTCCGCAAGAAGACGAGCGTCACGGACGTGATCAAGATCCGTCG TCAGGGCAAGCGAAAGGTCACCATGGTGACCGCCTATGACTACCCTTCCG CGATCCACGTCTGTCGCGCCGGCATCGATATCTTGCTGGTCGGCGACTCG TTAGGGATGGTCGAGCTAGGCTACGAAACCACACAGCCCGTCACGGTTGA TGACATGCTCCATCACTGCAAG
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Coding sequence (CDS) from alignment at S-firma_F_contig1067:128..499-

>mRNA_S-firma_F_contig1067.906.1 ID=mRNA_S-firma_F_contig1067.906.1|Name=mRNA_S-firma_F_contig1067.906.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=744bp|location=Sequence derived from alignment at S-firma_F_contig1067:128..499- (Sphaerotrichia firma ET2_F female)
AGGCCACAGCTGTGGTCTTGCAACCGTCGTCGTCCAACTAGCCTGGCCTG
TGGCTGTGGGCGGAGGACTGCGGCGGCAGCAACGCTCTCAACGTCGACAA
CACCACAAGGACCGGCGCCCTTGGCTGCGAAAGAACCATCGCCGCCACCG
GCTCCCGTCCGCAAGAAGACGAGCGTCACGGACGTGATCAAGATCCGTCG
TCAGGGCAAGCGAAAGGTCACCATGGTGACCGCCTATGACTACCCTTCCG
CGATCCACGTCTGTCGCGCCGGCATCGATATCTTGCTGGTCGGCGACTCG
TTAGGGATGGTCGAGCTAGGCTACGAAACCACACAGCCCGTCACGGTTGA
TGACATGCTCCATCACTGCAAGAGGCCACAGCTGTGGTCTTGCAACCGTC
GTCGTCCAACTAGCCTGGCCTGTGGCTGTGGGCGGAGGACTGCGGCGGCA
GCAACGCTCTCAACGTCGACAACACCACAAGGACCGGCGCCCTTGGCTGC
GAAAGAACCATCGCCGCCACCGGCTCCCGTCCGCAAGAAGACGAGCGTCA
CGGACGTGATCAAGATCCGTCGTCAGGGCAAGCGAAAGGTCACCATGGTG
ACCGCCTATGACTACCCTTCCGCGATCCACGTCTGTCGCGCCGGCATCGA
TATCTTGCTGGTCGGCGACTCGTTAGGGATGGTCGAGCTAGGCTACGAAA
CCACACAGCCCGTCACGGTTGATGACATGCTCCATCACTGCAAG
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