mRNA_S-firma_F_contig10661.898.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10661.898.1
Unique NamemRNA_S-firma_F_contig10661.898.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: A0A7R9Y7H0_9VIRI (Hypothetical protein n=1 Tax=Prasinoderma coloniale TaxID=156133 RepID=A0A7R9Y7H0_9VIRI)

HSP 1 Score: 127 bits (318), Expect = 2.900e-30
Identity = 104/311 (33.44%), Postives = 151/311 (48.55%), Query Frame = 1 
Query:    1 PSFGVYPDECTSRGLDIVTASAKSVAATF------PTPVAVFADDVA-RDKHTAAALCKGLGL--GNVTVVDGKIFDPVYNGVCDGPTDAQVAAALTXXXXXXXXVPSQASLVAAIQAALGKGSAPPLASISSQVSSSAYGPAYTGLAYIASWIAETWLLEQGAGLDVAWGNVSAAELYDMLKLHVYDLQVAN-PVPVARPRASNVLAHI-------------------SAALAARNG-TTFLVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLRFDVSGDTVTATFA-TTXXXXXAGTLLVGPAVF 840
            P +G  P  CT RG++++      +A         P  + V  D  A RD  TAAAL +G GL    V   +  +FDP   G C  PT  Q   A+         +     L+A +QAALGKG APP+  I++ +    Y   + G  Y+AS  AE +LL+ G+G++V +G VS  ++YD ++LH Y   V + P  + +   S++LAH+                   S A  A +   +  VGHDT +  +  LL+L+W A +P+P ++TPPGSMLR       VTA F   T      G L   PA+F
Sbjct:   42 PDWGTPPSYCTPRGVELIKGEGAYLADELKQAMGKPGVIKVVEDASAHRDLTTAAALLEGAGLTTARVGTANAPLFDPAKAGFCPYPTSPQYVRAIEANLASTPKLDDADELLARMQAALGKGVAPPIPEINNTIVLEGY---WEGGMYMASEWAEAFLLQYGSGIEVGYGRVSVDDVYDYMRLHTYYRAVNDRPYLIEQRGQSDLLAHMLWDLHDNTSKLRRTADARSSDAPGASDALASVYVGHDTNIDGINVLLNLTWDA-APYPRDATPPGSMLRLRADDGGVTAAFLYATFEEGSVGALTEVPALF 348
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: R1CXN0_EMIHU (Uncharacterized protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=R1CXN0_EMIHU)

HSP 1 Score: 125 bits (315), Expect = 6.740e-30
Identity = 97/267 (36.33%), Postives = 134/267 (50.19%), Query Frame = 1 
Query:    1 PSFGVYPDECTSRGLDIVTASAKSVAATF-----PTP---VAVFADDVARDKHTAAALCKGLGLGNVTVV-DGKIFDPVYNGVCDGPTDAQVAAALTXXXXXXXXVPSQASLVAAIQAALGKGSAPPLASISSQVSSSAYGPAYTGLAYIASWIAETWLLEQGAGLDVAWGNVSAAELYDMLKLHVYDLQVANP-VPVARPRASNVLAHISAALAAR--------NGTTFLVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLR 747
            P +GV P  CT+RG  I+    +S+         P P      +     RD  TA  L  GLGL ++  V D  +FDP +   C   T A    A+                +AA+QA LG+G APPL SI   V+  A G  + G +++AS   E  LL+ GAGL +A+G V+  +LY+ML+LHVY   +A+  + + R   SN+LAH+   LA+          G +  VGHDT +  L  LL L W A  P+P N+T PG MLR
Sbjct:   53 PDWGVAPTLCTARGRRIIQGQGRSLRGEILGRMGPAPGRLKVTYDAGSTRDNTTAEDLLAGLGLPSIARVGDAAVFDPPW---CPQLTAAAKERAVRARLKAVPPPARYEGRLAALQALLGRGVAPPLQSIPDVVAGGAVG--WLGGSFVASSWIEAMLLQFGAGLPMAYGRVAPPQLYEMLELHVYYRAIADRGLSIERRGESNLLAHVLRDLASGAGGASPQGGGASLYVGHDTNLDGLSALLGLGWPAAPPYPANTTVPGGMLR 314
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: A0A7S3BKX5_9VIRI (Hypothetical protein (Fragment) n=1 Tax=Prasinoderma singulare TaxID=676789 RepID=A0A7S3BKX5_9VIRI)

HSP 1 Score: 83.2 bits (204), Expect = 4.920e-16
Identity = 57/141 (40.43%), Postives = 79/141 (56.03%), Query Frame = 1 
Query:  124 RDKHTAAALCKGLGL-GNVTVV--DGKIFDPVYNGVCDGPTDAQVAAALTXXXXXXXXVPSQASLVAAIQAALGKGSAPPLASISSQVSSSAYGPAYTGLAYIASWIAETWLLEQGAGLDVAWGNVSAAE-LYDMLKLHVY 534
            RD  TAAAL +G G+  +VT +  D  +FDP   G+C  PT  Q   A+              +L+A +QAALGKG APP+  + + V    Y   + G  Y+AS  AE +LL+ GAGL+V +G VS  E +YD ++LH Y
Sbjct:    2 RDLDTAAALLEGAGIDASVTDMQPDAAVFDPQAAGICHYPTGQQYVDAINQNLRDTPRPEDANTLLAKMQAALGKGVAPPIPDVPNTVEEEGY---WEGGYYLASEWAEAFLLQYGAGLEVGYGQVSVPEDIYDYMRLHTY 139
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: A0A6A7MAG5_9PROT (Histidine-type phosphatase n=1 Tax=Rhodospirillales bacterium TaxID=2026786 RepID=A0A6A7MAG5_9PROT)

HSP 1 Score: 72.0 bits (175), Expect = 1.530e-10
Identity = 50/131 (38.17%), Postives = 71/131 (54.20%), Query Frame = 1 
Query:  421 IASWIAETWLLEQGAGL---DVAWGNVSA-AELYDMLKLHVYDLQVANP-VPVARPRASNVLAHISAALAARNGTTF--------------LVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLRFDV 756
            I S  AET+LLE    +    VAWG +S  AEL D+LK+H  +  +A   +P+AR R SN++A I A+L  +NG  F              LVGHDT + ++ +LL++ W  P  F  N   PG  L F++
Sbjct:  232 IGSSAAETFLLESAQAMPSSQVAWGRLSGDAELQDLLKIHRLEFDLAQKTLPIARQRGSNLMAQIVASL--QNGHKFPGLQALAEPLRLGLLVGHDTNLANVARLLNVGWQIPG-FQPNEASPGGALAFEL 359
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: A0A1H8RB33_9PROT (4-phytase / acid phosphatase n=1 Tax=Rhodospirillales bacterium URHD0017 TaxID=1380357 RepID=A0A1H8RB33_9PROT)

HSP 1 Score: 70.5 bits (171), Expect = 5.020e-10
Identity = 53/146 (36.30%), Postives = 77/146 (52.74%), Query Frame = 1 
Query:  394 GPAYTGLAYIASWIAETWLLEQGAGL---DVAWGNVSA-AELYDMLKLHVYDLQVANP-VPVARPRASNVLAHISAALAARNGTTF--------------LVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLRFDVSGDTVT 774
            G A +G   I S  AE +LLE   G+    VAWG +S  AEL ++LK+H  +  +A+  +P+AR   SN++A I  +L  ++G  F              LVGHDT + S+ +LL++ W  P  F  N   PG  L F++  DT T
Sbjct:  222 GVAISGPIGIGSTAAELFLLESAEGMPSSQVAWGRLSGDAELENLLKIHRLEFDLAHKTLPIARQHGSNLMAQIVMSL--QDGHKFPGLQSLAEPVRLGLLVGHDTNVASVSRLLNIGWRIPG-FQPNEASPGGALAFELLRDTRT 364
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BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Match: A0A512NQB9_9HYPH (Phosphoanhydride phosphorylase n=1 Tax=Reyranella soli TaxID=1230389 RepID=A0A512NQB9_9HYPH)

HSP 1 Score: 69.7 bits (169), Expect = 9.100e-10
Identity = 48/126 (38.10%), Postives = 69/126 (54.76%), Query Frame = 1 
Query:  436 AETWLLEQGAGL---DVAWGNVSA-AELYDMLKLHVYDLQVANP-VPVARPRASNVLAHISAALAARNGTTF--------------LVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLRFDV 756
            AET+L+E   GL    VAWG +S  AEL D+L++H  +  +A   +PVAR   SN++A I A+L  +NG  F              LVGHDT + ++ +LL++ W  P  F  N   PG  L F++
Sbjct:  237 AETFLMESAQGLPNAQVAWGRLSGDAELADLLEIHRLEFDLAQKTLPVARQHGSNLMAQIVASL--QNGHKFPGLQALAEPVRLGVLVGHDTNIANVSRLLNVGWRIPG-FQANEVVPGGALAFEL 359
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10661.898.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 6
Match NameE-valueIdentityDescription
A0A7R9Y7H0_9VIRI2.900e-3033.44Hypothetical protein n=1 Tax=Prasinoderma colonial... [more]
R1CXN0_EMIHU6.740e-3036.33Uncharacterized protein n=2 Tax=Emiliania huxleyi ... [more]
A0A7S3BKX5_9VIRI4.920e-1640.43Hypothetical protein (Fragment) n=1 Tax=Prasinoder... [more]
A0A6A7MAG5_9PROT1.530e-1038.17Histidine-type phosphatase n=1 Tax=Rhodospirillale... [more]
A0A1H8RB33_9PROT5.020e-1036.304-phytase / acid phosphatase n=1 Tax=Rhodospirilla... [more]
A0A512NQB9_9HYPH9.100e-1038.10Phosphoanhydride phosphorylase n=1 Tax=Reyranella ... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10661contigS-firma_F_contig10661:226..1104 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog44056.XP_009039050.1
Max annot lvl2759|Eukaryota
Evalue4.41e-31
EggNOG OGs2E8UJ@1|root,2SF9N@2759|Eukaryota
Hectar predicted targeting categoryother localisation
Exons1
Model size879
Cds size879
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815605.6177-CDS-S-firma_F_contig10661:225..11041622815605.6177-CDS-S-firma_F_contig10661:225..1104Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 226..1104 +
1696949449.003885-CDS-S-firma_F_contig10661:225..11041696949449.003885-CDS-S-firma_F_contig10661:225..1104Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10661 226..1104 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10661.898.1prot_S-firma_F_contig10661.898.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10661 226..1104 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10661.898.1

>prot_S-firma_F_contig10661.898.1 ID=prot_S-firma_F_contig10661.898.1|Name=mRNA_S-firma_F_contig10661.898.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=293bp
PSFGVYPDECTSRGLDIVTASAKSVAATFPTPVAVFADDVARDKHTAAAL
CKGLGLGNVTVVDGKIFDPVYNGVCDGPTDAQVAAALTAAAAAVPAVPSQ
ASLVAAIQAALGKGSAPPLASISSQVSSSAYGPAYTGLAYIASWIAETWL
LEQGAGLDVAWGNVSAAELYDMLKLHVYDLQVANPVPVARPRASNVLAHI
SAALAARNGTTFLVGHDTGMVSLGKLLDLSWGAPSPFPTNSTPPGSMLRF
DVSGDTVTATFATTTFTTTAGTLLVGPAVFASTATNTMSLSAF
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mRNA from alignment at S-firma_F_contig10661:226..1104+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10661.898.1 ID=mRNA_S-firma_F_contig10661.898.1|Name=mRNA_S-firma_F_contig10661.898.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=879bp|location=Sequence derived from alignment at S-firma_F_contig10661:226..1104+ (Sphaerotrichia firma ET2_F female)
CCGTCCTTTGGCGTGTACCCCGACGAGTGCACCAGCCGAGGCCTGGACAT
TGTGACGGCGTCGGCAAAGAGCGTTGCGGCCACGTTCCCGACGCCGGTGG
CGGTGTTTGCGGACGACGTTGCACGTGACAAGCACACGGCGGCGGCGCTG
TGCAAGGGGCTGGGGCTTGGCAACGTGACAGTGGTTGACGGCAAGATCTT
TGACCCTGTGTACAACGGCGTATGTGACGGCCCCACCGACGCGCAAGTCG
CCGCCGCTCTCACCGCTGCCGCTGCGGCTGTGCCCGCCGTGCCGTCTCAG
GCGTCCCTTGTTGCTGCCATACAGGCGGCGTTGGGGAAGGGGTCCGCGCC
ACCGCTGGCGTCCATCTCCAGCCAGGTCTCCAGCAGCGCGTACGGGCCGG
CGTACACCGGCCTGGCATATATCGCATCATGGATTGCGGAAACTTGGCTT
CTGGAGCAAGGCGCTGGGCTGGACGTCGCGTGGGGTAATGTGTCGGCGGC
GGAGCTGTACGACATGCTCAAGCTCCACGTTTACGACCTGCAGGTCGCCA
ACCCCGTCCCCGTTGCCCGCCCCCGTGCGTCAAACGTCCTGGCTCACATC
TCCGCCGCCCTCGCCGCCCGCAACGGGACGACGTTCCTCGTCGGCCATGA
CACGGGCATGGTGTCCCTTGGCAAACTCCTTGACCTGTCCTGGGGCGCCC
CCAGCCCGTTTCCCACCAACTCCACGCCCCCTGGCTCCATGCTTCGCTTT
GACGTGTCCGGGGACACCGTCACGGCGACGTTTGCGACCACCACGTTTAC
AACCACCGCCGGTACCCTCCTGGTCGGGCCAGCGGTGTTTGCCTCCACTG
CCACCAACACCATGTCACTGTCGGCGTTC
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Coding sequence (CDS) from alignment at S-firma_F_contig10661:226..1104+

>mRNA_S-firma_F_contig10661.898.1 ID=mRNA_S-firma_F_contig10661.898.1|Name=mRNA_S-firma_F_contig10661.898.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=1758bp|location=Sequence derived from alignment at S-firma_F_contig10661:226..1104+ (Sphaerotrichia firma ET2_F female)
CCGTCCTTTGGCGTGTACCCCGACGAGTGCACCAGCCGAGGCCTGGACAT
TGTGACGGCGTCGGCAAAGAGCGTTGCGGCCACGTTCCCGACGCCGGTGG
CGGTGTTTGCGGACGACGTTGCACGTGACAAGCACACGGCGGCGGCGCTG
TGCAAGGGGCTGGGGCTTGGCAACGTGACAGTGGTTGACGGCAAGATCTT
TGACCCTGTGTACAACGGCGTATGTGACGGCCCCACCGACGCGCAAGTCG
CCGCCGCTCTCACCGCTGCCGCTGCGGCTGTGCCCGCCGTGCCGTCTCAG
GCGTCCCTTGTTGCTGCCATACAGGCGGCGTTGGGGAAGGGGTCCGCGCC
ACCGCTGGCGTCCATCTCCAGCCAGGTCTCCAGCAGCGCGTACGGGCCGG
CGTACACCGGCCTGGCATATATCGCATCATGGATTGCGGAAACTTGGCTT
CTGGAGCAAGGCGCTGGGCTGGACGTCGCGTGGGGTAATGTGTCGGCGGC
GGAGCTGTACGACATGCTCAAGCTCCACGTTTACGACCTGCAGGTCGCCA
ACCCCGTCCCCGTTGCCCGCCCCCGTGCGTCAAACGTCCTGGCTCACATC
TCCGCCGCCCTCGCCGCCCGCAACGGGACGACGTTCCTCGTCGGCCATGA
CACGGGCATGGTGTCCCTTGGCAAACTCCTTGACCTGTCCTGGGGCGCCC
CCAGCCCGTTTCCCACCAACTCCACGCCCCCTGGCTCCATGCTTCGCTTT
GACGTGTCCGGGGACACCGTCACGGCGACGTTTGCGACCACCACGTTTAC
AACCACCGCCGGTACCCTCCTGGTCGGGCCAGCGGTGTTTGCCTCCACTG
CCACCAACACCATGTCACTGTCGGCGTTCCCGTCCTTTGGCGTGTACCCC
GACGAGTGCACCAGCCGAGGCCTGGACATTGTGACGGCGTCGGCAAAGAG
CGTTGCGGCCACGTTCCCGACGCCGGTGGCGGTGTTTGCGGACGACGTTG
CACGTGACAAGCACACGGCGGCGGCGCTGTGCAAGGGGCTGGGGCTTGGC
AACGTGACAGTGGTTGACGGCAAGATCTTTGACCCTGTGTACAACGGCGT
ATGTGACGGCCCCACCGACGCGCAAGTCGCCGCCGCTCTCACCGCTGCCG
CTGCGGCTGTGCCCGCCGTGCCGTCTCAGGCGTCCCTTGTTGCTGCCATA
CAGGCGGCGTTGGGGAAGGGGTCCGCGCCACCGCTGGCGTCCATCTCCAG
CCAGGTCTCCAGCAGCGCGTACGGGCCGGCGTACACCGGCCTGGCATATA
TCGCATCATGGATTGCGGAAACTTGGCTTCTGGAGCAAGGCGCTGGGCTG
GACGTCGCGTGGGGTAATGTGTCGGCGGCGGAGCTGTACGACATGCTCAA
GCTCCACGTTTACGACCTGCAGGTCGCCAACCCCGTCCCCGTTGCCCGCC
CCCGTGCGTCAAACGTCCTGGCTCACATCTCCGCCGCCCTCGCCGCCCGC
AACGGGACGACGTTCCTCGTCGGCCATGACACGGGCATGGTGTCCCTTGG
CAAACTCCTTGACCTGTCCTGGGGCGCCCCCAGCCCGTTTCCCACCAACT
CCACGCCCCCTGGCTCCATGCTTCGCTTTGACGTGTCCGGGGACACCGTC
ACGGCGACGTTTGCGACCACCACGTTTACAACCACCGCCGGTACCCTCCT
GGTCGGGCCAGCGGTGTTTGCCTCCACTGCCACCAACACCATGTCACTGT
CGGCGTTC
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