prot_S-firma_F_contig1066.896.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig1066.896.1
Unique Nameprot_S-firma_F_contig1066.896.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length363
Homology
[Close]
BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A6H5KK71_9PHAE (BRCT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KK71_9PHAE)

HSP 1 Score: 264 bits (674), Expect = 3.490e-83
Identity = 140/188 (74.47%), Postives = 150/188 (79.79%), Query Frame = 0 
Query:   36 MEAFLLKGSSTTPRTDPVRGDKAAAATLLYNPQPRQRFVFPNHNDNKHGSERKKGPPLGGGGASGYKQYRSSKLLEQAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKLLSDVPFRVVRSQKLGMGNFFGSS 223
            M+AFLLK   +        G +      LYNP PRQ FVFP  N +  G   KKGPPLGGGGASGY Q+R+SKLLEQAP   S++F G+SFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMK SLKMKVVHPDW+NRCIAEGKLL D PFRVVRSQKLGM  FFGSS
Sbjct:    1 MDAFLLKKDPSAAARLGSGGKQQTKCQFLYNPNPRQ-FVFPAPNLSNDGRSDKKGPPLGGGGASGYWQFRTSKLLEQAPAGVSEIFAGLSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMK-SLKMKVVHPDWVNRCIAEGKLLPDAPFRVVRSQKLGMDKFFGSS 186
[Close]
BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A0G4IYX9_PLABS (BRCT domain-containing protein n=1 Tax=Plasmodiophora brassicae TaxID=37360 RepID=A0A0G4IYX9_PLABS)

HSP 1 Score: 75.5 bits (184), Expect = 1.510e-12
Identity = 41/103 (39.81%), Postives = 60/103 (58.25%), Query Frame = 0 
Query:  120 LFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKV--VHPDWLNRCIAEGKLLSDVPFRVVRSQKLGMGNFF 220
            +F G+  YFNGRSG+   + LK  V   GGR  P +S+K VTHV+ ENLSA+K+ K +    K +V  V P+W+   I   K + +  +R V S+   + +FF
Sbjct:   62 VFQGVCVYFNGRSGEFSALQLKSFVRLCGGRIAPMLSVKVVTHVVCENLSAIKSAKVVASGPKSRVHFVRPEWILDSIKGAKRVREHAYRAVSSRTTEITSFF 164
[Close]
BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Match: A0A485LLY2_9STRA (Aste57867_22876 protein n=1 Tax=Aphanomyces stellatus TaxID=120398 RepID=A0A485LLY2_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.030e-6
Identity = 43/131 (32.82%), Postives = 72/131 (54.96%), Query Frame = 0 
Query:   87 RKKGPPLGGGGASGYKQYRSSKLLE-----QAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGRTTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKLLSDVPFRVVRSQ 212
            RKK  PL    +  + QY SSK+ +      + + +SKLF G++ Y NG++   + + L+  V ++GG+   +++ + VTH+IA +LS  K  +   +   + VVHP W+  CIA+ K +S   F   R Q
Sbjct:  306 RKKATPLFKQESVSFGQYMSSKISKLRGRNDSIRGSSKLFDGVAIYVNGQTQPSRDV-LRRLVLQYGGKFEQYLTDQ-VTHMIATHLSDTKFRELQSRKKPLPVVHPSWIEECIAQQKRVSTHTFIYSRYQ 434
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig1066.896.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5KK71_9PHAE3.490e-8374.47BRCT domain-containing protein n=1 Tax=Ectocarpus ... [more]
A0A0G4IYX9_PLABS1.510e-1239.81BRCT domain-containing protein n=1 Tax=Plasmodioph... [more]
A0A485LLY2_9STRA1.030e-632.82Aste57867_22876 protein n=1 Tax=Aphanomyces stella... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001357BRCT domainSMARTSM00292BRCT_7coord: 118..198
e-value: 7.0E-13
score: 58.8
IPR001357BRCT domainPFAMPF16589BRCT_2coord: 118..203
e-value: 2.2E-11
score: 44.0
IPR001357BRCT domainPROSITEPS50172BRCTcoord: 116..208
score: 22.604
IPR036420BRCT domain superfamilyGENE3D3.40.50.10190coord: 109..210
e-value: 1.3E-19
score: 72.3
IPR036420BRCT domain superfamilySUPERFAMILY52113BRCT domaincoord: 112..208
NoneNo IPR availablePANTHERPTHR45990FAMILY NOT NAMEDcoord: 85..343
NoneNo IPR availableTMHMMTMhelixcoord: 13..35

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig1066contigS-firma_F_contig1066:16652..19221 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig1066.896.1mRNA_S-firma_F_contig1066.896.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig1066 16651..19221 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig1066.896.1 ID=prot_S-firma_F_contig1066.896.1|Name=mRNA_S-firma_F_contig1066.896.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=363bp
STVTSAITTGRALALLGTLSVIAHLPFCSVGLGSTMEAFLLKGSSTTPRT
DPVRGDKAAAATLLYNPQPRQRFVFPNHNDNKHGSERKKGPPLGGGGASG
YKQYRSSKLLEQAPKEASKLFTGMSFYFNGRSGDKQTMHLKGAVSKHGGR
TTPFMSMKGVTHVIAENLSAVKTDKAMKQSLKMKVVHPDWLNRCIAEGKL
LSDVPFRVVRSQKLGMGNFFGSSASSSTPASASNGQHNSNQKENKKEETP
RRRRSSLGSSSSSGLSISREARHEEDRRGSRSRGRGLEGVQGSGSYVAGP
ARAAAVKSSNGRGDSRSRGRDVGLSTSKDTSQSRETSKKRARTSSSRAGD
GIRSQCSTSMYER
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR036420BRCT_dom_sf
IPR001357BRCT_dom