prot_S-firma_F_contig10656.889.1 (polypeptide) Sphaerotrichia firma ET2_F female

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_S-firma_F_contig10656.889.1
Unique Nameprot_S-firma_F_contig10656.889.1
Typepolypeptide
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Sequence length172
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Match: A0A6H5KG81_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KG81_9PHAE)

HSP 1 Score: 289 bits (740), Expect = 1.420e-97
Identity = 140/169 (82.84%), Postives = 151/169 (89.35%), Query Frame = 0 
Query:    1 FSKAIQARPGDASLYWGRSHAWERAGNRRQAVVDAGVGVCLRPRVAAGFDRLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPLDWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEGFVRPPWPRGAMPPALLLAP 169
            FSKAI+ RP DASLYWGRS +WERAGN R+AVVDAGVGVCLRPRVAAGF RLSA +EAQGRHA+VVRACFLGMRCGD+SKN  LGRRMS AREAG+LPPLDWTP DRRERW WAFLSFRGFLLR+AAG+A RLR+GGAGLALGAC GG+G   PPWPRGAMPP LL AP
Sbjct:   40 FSKAIRLRPADASLYWGRSQSWERAGNPRKAVVDAGVGVCLRPRVAAGFARLSATFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALGACEGGQGLSSPPWPRGAMPPVLLEAP 208
[Close]
BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Match: D7G7K5_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G7K5_ECTSI)

HSP 1 Score: 250 bits (638), Expect = 5.960e-83
Identity = 122/145 (84.14%), Postives = 132/145 (91.03%), Query Frame = 0 
Query:   25 AGNRRQAVVDAGVGVCLRPRVAAGFDRLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPLDWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEGFVRPPWPRGAMPPALLLAP 169
            AGN R+AVVDAGVGVCLRPRVAAGF RLSA++EAQGRHA+VVRACFLGMRCGD+SKN  LGRRMS AREAG+LPPLDWTP DRRERW WAFLSFRGFLLR+AAG+A RLR+GGAGLAL ACAGG+GF  PPWPRGAMPP LL AP
Sbjct:    2 AGNPRKAVVDAGVGVCLRPRVAAGFARLSASFEAQGRHADVVRACFLGMRCGDSSKNGELGRRMSSAREAGQLPPLDWTPPDRRERWTWAFLSFRGFLLRLAAGIAGRLRVGGAGLALAACAGGQGFSSPPWPRGAMPPVLLEAP 146
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10656.889.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5KG81_9PHAE1.420e-9782.84Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G7K5_ECTSI5.960e-8384.14Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0 of Sphaerotrichia firma female
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..101
e-value: 6.9E-8
score: 34.6
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 1..80

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10656contigS-firma_F_contig10656:525..3270 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.0 of Sphaerotrichia firma female2022-09-29
Diamond blastp: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-16
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10656.889.1mRNA_S-firma_F_contig10656.889.1Sphaerotrichia firma ET2_F femalemRNAS-firma_F_contig10656 525..3270 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_S-firma_F_contig10656.889.1 ID=prot_S-firma_F_contig10656.889.1|Name=mRNA_S-firma_F_contig10656.889.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=172bp
FSKAIQARPGDASLYWGRSHAWERAGNRRQAVVDAGVGVCLRPRVAAGFD
RLSAAYEAQGRHAEVVRACFLGMRCGDTSKNSTLGRRMSRAREAGELPPL
DWTPIDRRERWVWAFLSFRGFLLRVAAGVAWRLRLGGAGLALGACAGGEG
FVRPPWPRGAMPPALLLAPQG*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf