mRNA_S-firma_F_contig10655.887.1 (mRNA) Sphaerotrichia firma ET2_F female

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-firma_F_contig10655.887.1
Unique NamemRNA_S-firma_F_contig10655.887.1
TypemRNA
OrganismSphaerotrichia firma ET2_F female (Sphaerotrichia firma ET2_F female)
Homology
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: A0A6H5KRM3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KRM3_9PHAE)

HSP 1 Score: 102 bits (254), Expect = 1.950e-25
Identity = 51/89 (57.30%), Postives = 66/89 (74.16%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPST 272
            EDA+ RV+SG+E+ GADMQ+ T+AS+EA+ +FM KEE  RRKTA+  DGYIDFRD M  V D   G+ WVR +N+QKW DL   AA ++
Sbjct:   25 EDALLRVISGEEDIGADMQQDTRASFEAVKKFMDKEELSRRKTARGDDGYIDFRDEMTRVTDGKGGMEWVRNKNIQKWLDLHSIAAQTS 113
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: A0A6H5L1D3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L1D3_9PHAE)

HSP 1 Score: 101 bits (252), Expect = 2.880e-23
Identity = 49/88 (55.68%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            ++A+ R +SGD++ GA++QR T+ASYEA+ +FM KE+  R K A+DGDGYIDFRD M+ V D   G+VWVR +NVQKW D    AAP+
Sbjct:  208 DEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 295
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: A0A6H5L846_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L846_9PHAE)

HSP 1 Score: 103 bits (258), Expect = 5.130e-23
Identity = 52/87 (59.77%), Postives = 67/87 (77.01%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAP 266
            E+A+ RV+SG+E AGAD+QR T+ SYEA+ +FM KE   RRK AK+GDGYIDFR++M+   D   G+VWVR ENVQKW+D L  A+P
Sbjct:  842 EEALSRVVSGEEVAGADLQRDTRVSYEALKKFMDKE-LNRRKNAKEGDGYIDFREKMQRESDGKGGIVWVRIENVQKWRDSLSTASP 927
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: D7FUD0_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUD0_ECTSI)

HSP 1 Score: 103 bits (258), Expect = 5.260e-23
Identity = 53/88 (60.23%), Postives = 67/88 (76.14%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            ED +RRV+SG+E+ G DMQ++T+ASYEA+TE M K E  RRK A+DGDGY+DFR+ M+ + D   G VWVR ENVQKW D   +AAPS
Sbjct: 1150 EDELRRVVSGEEDVGTDMQKQTRASYEALTELMGKLE--RRKDARDGDGYVDFRENMQRLSDGRGGEVWVRNENVQKWLDSHSSAAPS 1235
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: D8LCS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS7_ECTSI)

HSP 1 Score: 103 bits (256), Expect = 9.920e-23
Identity = 49/89 (55.06%), Postives = 68/89 (76.40%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPST 272
            EDA+ R++SG+E+ GADM++ T+ASYEA+ +FM KE+  R K A+DGDGY+DFRD+M+ V D   G+VW+R ENVQ+W D    AA S+
Sbjct: 1439 EDALLRIVSGEEDVGADMRKDTRASYEALKKFMDKEQMDRLKNARDGDGYVDFRDKMKRVADGRGGMVWIRNENVQQWTDSRSNAALSS 1527
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: A0A6H5K516_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K516_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.280e-22
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            E+A+ R +SGD++ GA++QR T+ASYEA+ +FM KE+  R K A+DGDGYIDFRD M+ V D   G+VWVR +NVQKW D    AAP+
Sbjct:  709 EEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 796
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: A0A6H5K1K4_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1K4_9PHAE)

HSP 1 Score: 102 bits (255), Expect = 1.300e-22
Identity = 50/88 (56.82%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            E+A+ R +SGD++ GA++QR T+ASYEA+ +FM KE+  R K A+DGDGYIDFRD M+ V D   G+VWVR +NVQKW D    AAP+
Sbjct:  877 EEALLRAVSGDDDIGAELQRDTRASYEALKKFMDKEQVDRVKNARDGDGYIDFRDEMKRVTDGRGGMVWVRNDNVQKWLDSHSIAAPT 964
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: D7G431_ECTSI (LRR-GTPase of the ROCO family, incomplete sequence n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G431_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.340e-22
Identity = 54/88 (61.36%), Postives = 66/88 (75.00%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            E A+RRV++G+E  GADMQR T+ASYEA+ +FM KEE KR K AKDGDGY+ FRD M+ V D   G+VWVR +NVQKW  L   AAP+
Sbjct: 1005 EHALRRVVTGEEAIGADMQRGTRASYEALKKFMDKEEIKRCKDAKDGDGYVHFRDEMKRVADGKGGMVWVRNKNVQKW--LESRAAPT 1090
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: D7FUC3_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUC3_ECTSI)

HSP 1 Score: 101 bits (252), Expect = 3.380e-22
Identity = 51/88 (57.95%), Postives = 64/88 (72.73%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            EDA+ RV+SG+E+  ADMQ  T+ASYEA+ + M KE+  R K A+DGDGYIDFRD+M+ V D   G+VWVR ENVQ+W D     APS
Sbjct: 1157 EDALLRVVSGEEDVDADMQNDTRASYEALKKLMDKEQVGRLKNARDGDGYIDFRDKMKRVPDGRGGMVWVRNENVQRWLDSHSNTAPS 1244
[Close]
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Match: D8LJS7_ECTSI (LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LJS7_ECTSI)

HSP 1 Score: 100 bits (249), Expect = 8.590e-22
Identity = 49/88 (55.68%), Postives = 64/88 (72.73%), Query Frame = 3 
Query:    6 EDAIRRVLSGDEEAGADMQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGLVWVRTENVQKWKDLLPAAAPS 269
            ++A+ R + GD+  GAD+QR T+ASYEA+ +FM KE+ +R K  +DGDGYIDFRD M+ V D   G+VWVR ENVQKW D    AAP+
Sbjct: 1224 DEALLRAVLGDDNIGADLQRDTRASYEALKKFMDKEQIERVKNTRDGDGYIDFRDEMKRVPDGRGGMVWVRNENVQKWLDSRSIAAPT 1311
The following BLAST results are available for this feature:
BLAST of mRNA_S-firma_F_contig10655.887.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef90)
Total hits: 20
Match NameE-valueIdentityDescription
A0A6H5KRM3_9PHAE1.950e-2557.30Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L1D3_9PHAE2.880e-2355.68Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5L846_9PHAE5.130e-2359.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FUD0_ECTSI5.260e-2360.23LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LCS7_ECTSI9.920e-2355.06LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
A0A6H5K516_9PHAE1.280e-2256.82Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5K1K4_9PHAE1.300e-2256.82Uncharacterized protein n=2 Tax=Ectocarpus sp. CCA... [more]
D7G431_ECTSI3.340e-2261.36LRR-GTPase of the ROCO family, incomplete sequence... [more]
D7FUC3_ECTSI3.380e-2257.95LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]
D8LJS7_ECTSI8.590e-2255.68LRR-GTPase of the ROCO family n=1 Tax=Ectocarpus s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-firma_F_contig10655contigS-firma_F_contig10655:3661..4105 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 of Sphaerotrichia firma female vs UniRef902022-09-19
OGS1.0 of Sphaerotrichia firma ET2_F female2021-02-24
Properties
Property NameValue
Seed ortholog2880.D8LF46
PFAMsLRRNT_2,LRR_1,LRR_6,LRR_8,Roc
Max annot lvl2759|Eukaryota
KEGG rclassRC00049,RC00059,RC00171,RC00262,RC00397,RC00451,RC00714,RC00746,RC01248
KEGG koko:K01188
KEGG ReactionR00026,R02558,R02887,R02985,R03527,R04949,R04998,R10035,R10039,R10040
KEGG Pathwayko00460,ko00500,ko00940,ko01100,ko01110,map00460,map00500,map00940,map01100,map01110
GOsGO:0000003,GO:0003002,GO:0003006,GO:0003674,GO:0004857,GO:0007275,GO:0007389,GO:0008150,GO:0009791,GO:0009908,GO:0022414,GO:0030234,GO:0032501,GO:0032502,GO:0043086,GO:0044092,GO:0048367,GO:0048608,GO:0048731,GO:0048832,GO:0048833,GO:0048856,GO:0050789,GO:0050790,GO:0050793,GO:0061458,GO:0065007,GO:0065009,GO:0090567,GO:0098772
Evalue1.49e-18
EggNOG OGs2CYK8@1|root,2S4YE@2759|Eukaryota
EC3.2.1.21
CAZyGH1
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size445
Cds size219
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-firma_F_contig10655.887.1prot_S-firma_F_contig10655.887.1Sphaerotrichia firma ET2_F femalepolypeptideS-firma_F_contig10655 3717..3935 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.5552168-UTR-S-firma_F_contig10655:3660..37161622815604.5552168-UTR-S-firma_F_contig10655:3660..3716Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 3661..3716 +
1696949448.2557194-UTR-S-firma_F_contig10655:3660..37161696949448.2557194-UTR-S-firma_F_contig10655:3660..3716Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 3661..3716 +
1622815604.581293-UTR-S-firma_F_contig10655:3935..41051622815604.581293-UTR-S-firma_F_contig10655:3935..4105Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 3936..4105 +
1696949448.2822883-UTR-S-firma_F_contig10655:3935..41051696949448.2822883-UTR-S-firma_F_contig10655:3935..4105Sphaerotrichia firma ET2_F femaleUTRS-firma_F_contig10655 3936..4105 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815604.570982-CDS-S-firma_F_contig10655:3716..39351622815604.570982-CDS-S-firma_F_contig10655:3716..3935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 3717..3935 +
1696949448.270964-CDS-S-firma_F_contig10655:3716..39351696949448.270964-CDS-S-firma_F_contig10655:3716..3935Sphaerotrichia firma ET2_F femaleCDSS-firma_F_contig10655 3717..3935 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-firma_F_contig10655.887.1

>prot_S-firma_F_contig10655.887.1 ID=prot_S-firma_F_contig10655.887.1|Name=mRNA_S-firma_F_contig10655.887.1|organism=Sphaerotrichia firma ET2_F female|type=polypeptide|length=73bp
MQRKTKASYEAITEFMTKEEAKRRKTAKDGDGYIDFRDRMEPVQDKNVGL
VWVRTENVQKWKDLLPAAAPST*
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mRNA from alignment at S-firma_F_contig10655:3661..4105+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-firma_F_contig10655.887.1 ID=mRNA_S-firma_F_contig10655.887.1|Name=mRNA_S-firma_F_contig10655.887.1|organism=Sphaerotrichia firma ET2_F female|type=mRNA|length=445bp|location=Sequence derived from alignment at S-firma_F_contig10655:3661..4105+ (Sphaerotrichia firma ET2_F female)
TGGGCGAGGACGCGATACGCCGTGTTTTGTCTGGGGACGAAGAAGCCGGG
GCCGACATGCAAAGAAAGACGAAGGCCTCGTATGAAGCAATCACAGAGTT
CATGACAAAGGAGGAAGCCAAGAGACGCAAGACGGCCAAGGATGGCGATG
GCTACATAGACTTCCGGGACAGGATGGAGCCAGTGCAAGACAAGAATGTA
GGATTGGTTTGGGTTCGGACGGAAAACGTTCAAAAGTGGAAGGACTTGCT
TCCGGCGGCTGCGCCATCGACGTAGATGCCGGGATTCTTGTGAGGAAGCC
ACCGAACGTTGTCATAACTCTTATGGGAGAGAAAGGCTGCGAGAACAGCG
CAACTTCTGATCCGAAACATTTGTCAAAAAACTTTTTGTGCAAGCTTGTT
GTGGGGCGGAGAAAGTTTTGTTCACGGGACTGGTCGAATGCGGAG
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Coding sequence (CDS) from alignment at S-firma_F_contig10655:3661..4105+

>mRNA_S-firma_F_contig10655.887.1 ID=mRNA_S-firma_F_contig10655.887.1|Name=mRNA_S-firma_F_contig10655.887.1|organism=Sphaerotrichia firma ET2_F female|type=CDS|length=438bp|location=Sequence derived from alignment at S-firma_F_contig10655:3661..4105+ (Sphaerotrichia firma ET2_F female)
ATGCAAAGAAAGACGAAGGCCTCGTATGAAGCAATCACAGAGTTCATGAC
AAAGGAGGAAGCCAAGAGACGCAAGACGGCCAAGGATGGCGATGGCTACA
TAGACTTCCGGGACAGGATGGAGCCAGTGCAAGACAAGAATGTAGGATTG
GTTTGGGTTCGGACGGAAAACGTTCAAAAGTGGAAGGACTTGCTTCCGGC
GGCTGCGCCATCGACGTAGATGCAAAGAAAGACGAAGGCCTCGTATGAAG
CAATCACAGAGTTCATGACAAAGGAGGAAGCCAAGAGACGCAAGACGGCC
AAGGATGGCGATGGCTACATAGACTTCCGGGACAGGATGGAGCCAGTGCA
AGACAAGAATGTAGGATTGGTTTGGGTTCGGACGGAAAACGTTCAAAAGT
GGAAGGACTTGCTTCCGGCGGCTGCGCCATCGACGTAG
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